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Search of human proteins with 229577180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
(451 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 927 0.0
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 826 0.0
gi|148227842 Myb-like, SWIRM and MPN domains 1 [Homo sapiens] 62 1e-09
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 56 6e-08
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 56 6e-08
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 56 6e-08
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 55 1e-07
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 51 2e-06
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 50 3e-06
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 50 3e-06
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 50 5e-06
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 50 5e-06
gi|109452587 family with sequence similarity 98, member B isofor... 50 5e-06
gi|238859557 regulatory factor X1 [Homo sapiens] 49 7e-06
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 49 9e-06
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 49 9e-06
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 49 9e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 49 9e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 49 9e-06
gi|84570137 homeobox B3 [Homo sapiens] 48 2e-05
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 48 2e-05
gi|5032007 purine-rich element binding protein A [Homo sapiens] 47 4e-05
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 47 4e-05
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 47 4e-05
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 47 5e-05
gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo sa... 47 5e-05
gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo sap... 47 5e-05
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 46 6e-05
gi|4502565 calpain, small subunit 1 [Homo sapiens] 46 6e-05
gi|51599151 calpain, small subunit 1 [Homo sapiens] 46 6e-05
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 927 bits (2395), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA 60
MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA
Sbjct: 1 MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA 60
Query: 61 GGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQT 120
GGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQT
Sbjct: 61 GGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQT 120
Query: 121 FNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPA 180
FNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPA
Sbjct: 121 FNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPA 180
Query: 181 SEGEEEELLMEEEEEDVLAGVSAEDKSRRPLGKSPSEPAHPEATTPGKRVDSKIRVPVRY 240
SEGEEEELLMEEEEEDVLAGVSAEDKSRRPLGKSPSEPAHPEATTPGKRVDSKIRVPVRY
Sbjct: 181 SEGEEEELLMEEEEEDVLAGVSAEDKSRRPLGKSPSEPAHPEATTPGKRVDSKIRVPVRY 240
Query: 241 CMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLIYQSLFLRGLSLVGWYHS 300
CMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLIYQSLFLRGLSLVGWYHS
Sbjct: 241 CMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLIYQSLFLRGLSLVGWYHS 300
Query: 301 HPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPP 360
HPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPP
Sbjct: 301 HPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPP 360
Query: 361 PEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPDLVRLQEPWSQEHTYLD 420
PEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPDLVRLQEPWSQEHTYLD
Sbjct: 361 PEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPDLVRLQEPWSQEHTYLD 420
Query: 421 KLKISLASRTPKDQSLCHVLEQVCGVLKQGS 451
KLKISLASRTPKDQSLCHVLEQVCGVLKQGS
Sbjct: 421 KLKISLASRTPKDQSLCHVLEQVCGVLKQGS 451
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 826 bits (2134), Expect = 0.0
Identities = 421/501 (84%), Positives = 421/501 (84%), Gaps = 80/501 (15%)
Query: 1 MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA 60
MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA
Sbjct: 1 MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA 60
Query: 61 GGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQT 120
GGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQT
Sbjct: 61 GGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQT 120
Query: 121 FNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPA 180
FNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPA
Sbjct: 121 FNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPA 180
Query: 181 SEGEEEELLMEEEEEDVLAGVSAEDKSRRPLGKSPSEPAHPEATTPGKRVDSKIRVPVRY 240
SEGEEEELLMEEEEEDVLAGVSAEDKSRRPLGKSPSEPAHPEATTPGKRVDSKIRVPVRY
Sbjct: 181 SEGEEEELLMEEEEEDVLAGVSAEDKSRRPLGKSPSEPAHPEATTPGKRVDSKIRVPVRY 240
Query: 241 CMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLL------------------ 282
CMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLL
Sbjct: 241 CMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLDFHSHLTRSEVVGYLGGR 300
Query: 283 --------------------------------IYQSLFLRGLSLVGWYHSHPHSPALPSL 310
IYQSLFLRGLSLVGWYHSHPHSPALPSL
Sbjct: 301 WDVNSQMLTVLRAFPCRSRLGDAETAAAIEEEIYQSLFLRGLSLVGWYHSHPHSPALPSL 360
Query: 311 QDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPEQRPSDYGI 370
QDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPE
Sbjct: 361 QDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPE-------- 412
Query: 371 PMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPDLVRLQEPWSQEHTYLDKLKISLASRT 430
MLLVEFYKGSPDLVRLQEPWSQEHTYLDKLKISLASRT
Sbjct: 413 ----------------------MLLVEFYKGSPDLVRLQEPWSQEHTYLDKLKISLASRT 450
Query: 431 PKDQSLCHVLEQVCGVLKQGS 451
PKDQSLCHVLEQVCGVLKQGS
Sbjct: 451 PKDQSLCHVLEQVCGVLKQGS 471
>gi|148227842 Myb-like, SWIRM and MPN domains 1 [Homo sapiens]
Length = 828
Score = 61.6 bits (148), Expect = 1e-09
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 285 QSLFLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSG 344
++L +RG S++GWYHSHP PSL+DID Q YQ S G + ++ SPY
Sbjct: 642 ETLAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYF---SRGGAKFIGMIVSPYNRN 698
Query: 345 NPGPESKISPFWVMPPPEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPD 404
NP P S+I+ V+ Y +P E+ + + + + ++E Y+ S
Sbjct: 699 NPLPYSQITCL-VISEEISPDGSYRLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHS 757
Query: 405 LVRLQEPWSQEH--TYLDKLKISLASRTPKDQSLCHVLEQ 442
V + + + ++ T L KL + +T + C + E+
Sbjct: 758 SVPMDKIFRRDSDLTCLQKL-LECMRKTLSKVTNCFMAEE 796
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 56.2 bits (134), Expect = 6e-08
Identities = 24/33 (72%), Positives = 24/33 (72%)
Query: 32 RPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
RP AG GGG GGGG GGGGGGGAGAGG G
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 49.7 bits (117), Expect = 5e-06
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 10 AGGAGEEAPEEDEDEAEAED-----PERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
AG G P ++ E P GAGGG GGGG GGGGGG GAG G
Sbjct: 216 AGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGG 275
Query: 65 GPGGALTRRA 74
GA+ A
Sbjct: 276 AGAGAVAAAA 285
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 56.2 bits (134), Expect = 6e-08
Identities = 24/33 (72%), Positives = 24/33 (72%)
Query: 32 RPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
RP AG GGG GGGG GGGGGGGAGAGG G
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 49.7 bits (117), Expect = 5e-06
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 10 AGGAGEEAPEEDEDEAEAED-----PERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
AG G P ++ E P GAGGG GGGG GGGGGG GAG G
Sbjct: 216 AGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGG 275
Query: 65 GPGGALTRRA 74
GA+ A
Sbjct: 276 AGAGAVAAAA 285
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 56.2 bits (134), Expect = 6e-08
Identities = 24/33 (72%), Positives = 24/33 (72%)
Query: 32 RPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
RP AG GGG GGGG GGGGGGGAGAGG G
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 49.7 bits (117), Expect = 5e-06
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 10 AGGAGEEAPEEDEDEAEAED-----PERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
AG G P ++ E P GAGGG GGGG GGGGGG GAG G
Sbjct: 216 AGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGG 275
Query: 65 GPGGALTRRA 74
GA+ A
Sbjct: 276 AGAGAVAAAA 285
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 55.1 bits (131), Expect = 1e-07
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 5 EPLSPAGGAGEEAPEEDEDEAEAEDPE-------RPNAGAGGGRSG--------GGGSSV 49
E S EE +ED+DE + + + P G GG R G GGGS++
Sbjct: 15 EECSEEDSGAEEEEDEDDDEPDDDTLDLGEVELVEPGLGVGGERDGLLCGETGGGGGSAL 74
Query: 50 SGGGGGGGAGAGGCGGPG 67
GGGGGG G GG GGPG
Sbjct: 75 GPGGGGGGGGGGGGGGPG 92
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/64 (46%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 7 LSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
++ AGGAG A A D G GGG GGGG GGGGGG GG GGP
Sbjct: 128 MAGAGGAGAAA-----GGGGAHD----GPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGP 178
Query: 67 GGAL 70
GG L
Sbjct: 179 GGGL 182
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 9 PAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
P GA E + + P AG GGG GGGG GGGGGGG G GG GG G
Sbjct: 33 PLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGG----GGGGGGGVGGGGAGGGAG 88
Query: 69 ALTRRAVTLRVLLKDALLEPGA 90
L + + EPG+
Sbjct: 89 GGRSPVRELDMGAAERSREPGS 110
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 1 MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGA 60
+A P AGG G +A E + P G GGG GG S SGGGGG G+G+
Sbjct: 164 VADPRASPGAGGGGAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSGSSGGGGGSGSGS 223
Query: 61 GGCGGPGGALTRRAVTLRVL 80
GG + ++++ + L
Sbjct: 224 GGSSSSSSSSSKKSKEQKAL 243
Score = 37.7 bits (86), Expect = 0.021
Identities = 19/37 (51%), Positives = 20/37 (54%)
Query: 26 EAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGG 62
E DPE GGGGS+ SGGGGGGG G G
Sbjct: 66 EPADPEGAGLLLPPPGGGGGGSAGSGGGGGGGVGVPG 102
Score = 37.4 bits (85), Expect = 0.028
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 14 GEEAPEEDED-------EAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
GE++P++D D A DP GGG G S + GG GG GG
Sbjct: 144 GEQSPDDDSDGRCELVLRAGVADPRASPGAGGGGAKAAEGCSNAHLHGGASVPPGGLGGG 203
Query: 67 GG 68
GG
Sbjct: 204 GG 205
Score = 32.3 bits (72), Expect = 0.90
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 51 GGGGGGGAGAGGCGGPG 67
GGGGGG AG+GG GG G
Sbjct: 81 GGGGGGSAGSGGGGGGG 97
Score = 29.3 bits (64), Expect = 7.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 44 GGGSSVSGGGGGGGAGAGGCGGPGGAL 70
G G + GGGGG AG GG GG +
Sbjct: 72 GAGLLLPPPGGGGGGSAGSGGGGGGGV 98
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGAL 70
GAGG GG S+ GGGGGGG G GG G GGAL
Sbjct: 212 GAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/35 (60%), Positives = 21/35 (60%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
A AGG GGG S GGGGGG G GG GG GA
Sbjct: 208 ASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGA 242
Score = 42.4 bits (98), Expect = 9e-04
Identities = 21/34 (61%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 36 GAGGG---RSGGGGSSVSGGGGGGGAGAGGCGGP 66
GAGGG +GGGG GGGGGG AGAGG P
Sbjct: 215 GAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHP 248
Score = 37.7 bits (86), Expect = 0.021
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 33 PNAGA----GGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
P AGA G + GG+ +GGGG AG GG GG GG
Sbjct: 195 PTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGG 234
Score = 35.4 bits (80), Expect = 0.11
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
AG+ +GG G + GG G G GG GG GG
Sbjct: 203 AGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG 236
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGAL 70
GAGG GG S+ GGGGGGG G GG G GGAL
Sbjct: 212 GAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/35 (60%), Positives = 21/35 (60%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
A AGG GGG S GGGGGG G GG GG GA
Sbjct: 208 ASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGA 242
Score = 42.4 bits (98), Expect = 9e-04
Identities = 21/34 (61%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 36 GAGGG---RSGGGGSSVSGGGGGGGAGAGGCGGP 66
GAGGG +GGGG GGGGGG AGAGG P
Sbjct: 215 GAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHP 248
Score = 37.7 bits (86), Expect = 0.021
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 33 PNAGA----GGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
P AGA G + GG+ +GGGG AG GG GG GG
Sbjct: 195 PTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGG 234
Score = 35.4 bits (80), Expect = 0.11
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
AG+ +GG G + GG G G GG GG GG
Sbjct: 203 AGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG 236
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/33 (66%), Positives = 22/33 (66%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G GGGR GGGG GG GGGG G GG GG GG
Sbjct: 342 GGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGG 374
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/40 (60%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 32 RPNAGAGGGRSG---GGGSSVSGGGGGGGAGAGGCGGPGG 68
R G GGGR G GGG GGGGGGG G GG GG GG
Sbjct: 347 RGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGG 386
Score = 47.4 bits (111), Expect = 3e-05
Identities = 25/52 (48%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 23 DEAEAEDPERP------NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
+E E PE P G G G GGGG GGGGGG G GG GG GG
Sbjct: 313 NEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGG 364
Score = 42.7 bits (99), Expect = 7e-04
Identities = 19/33 (57%), Positives = 19/33 (57%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G GGG G GG GG GG G G GG GG GG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGG 371
Score = 42.0 bits (97), Expect = 0.001
Identities = 19/32 (59%), Positives = 19/32 (59%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
G GGG GGGG G GGGGG G GG G G
Sbjct: 360 GGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRG 391
Score = 38.5 bits (88), Expect = 0.013
Identities = 18/33 (54%), Positives = 18/33 (54%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G G G GGGG GGGGGG G G G GG
Sbjct: 363 GGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGG 395
Score = 38.5 bits (88), Expect = 0.013
Identities = 19/33 (57%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 36 GAGGGRSGGGGSSVS---GGGGGGGAGAGGCGG 65
G GGR G GG GGGGGGG G GG GG
Sbjct: 397 GGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGG 429
Score = 38.1 bits (87), Expect = 0.016
Identities = 20/34 (58%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 36 GAGGGRSGGGGSSVSGGGG-GGGAGAGGCGGPGG 68
G GGG GGGG GGGG GG G G GG GG
Sbjct: 365 GWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGG 398
Score = 37.4 bits (85), Expect = 0.028
Identities = 21/42 (50%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 36 GAGGGRSGGGGSSVSGGGG-----GGGAGAGGCGGPGGALTR 72
G GGR G GG GG G GGG G GG GG GG R
Sbjct: 391 GDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRR 432
Score = 35.4 bits (80), Expect = 0.11
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 36 GAGGGRSGGGGSSVSG-------GGGGGGAGAGGCGGPG 67
G GGG GGGG G GG GG G GG GG G
Sbjct: 371 GGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRG 409
Score = 33.5 bits (75), Expect = 0.40
Identities = 17/33 (51%), Positives = 17/33 (51%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G GGG GG G G GG G GG GG GG
Sbjct: 375 GWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGG 407
Score = 32.3 bits (72), Expect = 0.90
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G GG GGGG G G G GG GG GG
Sbjct: 372 GGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGG 404
Score = 32.3 bits (72), Expect = 0.90
Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 16/54 (29%)
Query: 36 GAGGGRSG-------GGGSSVSGGGGGG---------GAGAGGCGGPGGALTRR 73
G GGGR G GG G GG G G G GG GG GG RR
Sbjct: 379 GGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRR 432
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 49.3 bits (116), Expect = 7e-06
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
+ GAG S GGG S GGGGGGG G GG G GG
Sbjct: 371 STGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGG 405
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/34 (58%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
N+ GGG GGGG GGGGGGG G+G GG G
Sbjct: 378 NSSGGGGSGGGGG----GGGGGGGGGSGSTGGGG 407
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 37 AGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
A +G G S+ SGGGG GG G GG GG GG
Sbjct: 367 ASSTSTGAGASNSSGGGGSGGGGGGGGGGGGG 398
Score = 40.8 bits (94), Expect = 0.003
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
+ G G G GGGG GGGGGGG+G+ G GG G
Sbjct: 380 SGGGGSGGGGGGG----GGGGGGGSGSTGGGGSG 409
Score = 40.4 bits (93), Expect = 0.003
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAG 61
+G GGG GGGG SG GGGG+GAG
Sbjct: 385 SGGGGGGGGGGGGGGSGSTGGGGSGAG 411
Score = 35.4 bits (80), Expect = 0.11
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 25 AEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
A A + GGG GGGG GGGG G G GG G
Sbjct: 374 AGASNSSGGGGSGGGGGGGGGG----GGGGSGSTGGGGSG 409
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 48.9 bits (115), Expect = 9e-06
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 4 PEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGC 63
PEP++ A A A G GGG GGGGSS +GGGGGGG G C
Sbjct: 57 PEPIASAAAAA------------ATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGSNC 104
Query: 64 -----------GGPGGALT 71
GG GG ++
Sbjct: 105 NPNLAAASNGSGGGGGGIS 123
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 34 NAGAGGGRSGGGGSS--------VSGGGGGGGAGAGGCGGPGGALTRRAVT 76
++G GGG GGGG S S G GGGG G GG + A T
Sbjct: 88 SSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINAST 138
Score = 33.9 bits (76), Expect = 0.31
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 32 RPNAGAGGGRSGGGGSSVSGGGGGGGAGAG----GCGGPGG 68
RP A + +S GGGGGGG+G G G GG GG
Sbjct: 56 RPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGG 96
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 33 PNAGAGGGRSGGGGSSVSGGGG 54
PN A SGGGG +S GGG
Sbjct: 106 PNLAAASNGSGGGGGGISAGGG 127
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 48.9 bits (115), Expect = 9e-06
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 4 PEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGC 63
PEP++ A A A G GGG GGGGSS +GGGGGGG G C
Sbjct: 57 PEPIASAAAAA------------ATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGSNC 104
Query: 64 -----------GGPGGALT 71
GG GG ++
Sbjct: 105 NPNLAAASNGSGGGGGGIS 123
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 34 NAGAGGGRSGGGGSS--------VSGGGGGGGAGAGGCGGPGGALTRRAVT 76
++G GGG GGGG S S G GGGG G GG + A T
Sbjct: 88 SSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINAST 138
Score = 33.9 bits (76), Expect = 0.31
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 32 RPNAGAGGGRSGGGGSSVSGGGGGGGAGAG----GCGGPGG 68
RP A + +S GGGGGGG+G G G GG GG
Sbjct: 56 RPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGG 96
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 33 PNAGAGGGRSGGGGSSVSGGGG 54
PN A SGGGG +S GGG
Sbjct: 106 PNLAAASNGSGGGGGGISAGGG 127
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 48.9 bits (115), Expect = 9e-06
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 4 PEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGC 63
PEP++ A A A G GGG GGGGSS +GGGGGGG G C
Sbjct: 57 PEPIASAAAAA------------ATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGSNC 104
Query: 64 -----------GGPGGALT 71
GG GG ++
Sbjct: 105 NPNLAAASNGSGGGGGGIS 123
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 34 NAGAGGGRSGGGGSS--------VSGGGGGGGAGAGGCGGPGGALTRRAVT 76
++G GGG GGGG S S G GGGG G GG + A T
Sbjct: 88 SSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINAST 138
Score = 33.9 bits (76), Expect = 0.31
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 32 RPNAGAGGGRSGGGGSSVSGGGGGGGAGAG----GCGGPGG 68
RP A + +S GGGGGGG+G G G GG GG
Sbjct: 56 RPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGG 96
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 33 PNAGAGGGRSGGGGSSVSGGGG 54
PN A SGGGG +S GGG
Sbjct: 106 PNLAAASNGSGGGGGGISAGGG 127
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.9 bits (115), Expect = 9e-06
Identities = 22/40 (55%), Positives = 24/40 (60%)
Query: 28 EDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
+ P+ AG GGG GGGG GGGGGGG GG G PG
Sbjct: 60 DKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPG 99
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 35 AGAGGGRSG-GGGSSVSGGGGGGGAGAGGCGGPGG 68
AGAGGG G GGG GGGGGGG G+ G GGP G
Sbjct: 65 AGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPG 99
Score = 38.9 bits (89), Expect = 0.010
Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 38 GGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
G G GGGG G GGGGG G GG GG GG+
Sbjct: 64 GAGAGGGGG----GFGGGGGFGGGGGGGGGGS 91
Score = 32.7 bits (73), Expect = 0.69
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
G GGG GGGG S GGG G G G P
Sbjct: 79 GFGGGGGGGGGGSFGGGGPPGLGGLFQAGMP 109
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.9 bits (115), Expect = 9e-06
Identities = 22/40 (55%), Positives = 24/40 (60%)
Query: 28 EDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
+ P+ AG GGG GGGG GGGGGGG GG G PG
Sbjct: 60 DKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPG 99
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 35 AGAGGGRSG-GGGSSVSGGGGGGGAGAGGCGGPGG 68
AGAGGG G GGG GGGGGGG G+ G GGP G
Sbjct: 65 AGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPG 99
Score = 38.9 bits (89), Expect = 0.010
Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 38 GGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
G G GGGG G GGGGG G GG GG GG+
Sbjct: 64 GAGAGGGGG----GFGGGGGFGGGGGGGGGGS 91
Score = 32.7 bits (73), Expect = 0.69
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
G GGG GGGG S GGG G G G P
Sbjct: 79 GFGGGGGGGGGGSFGGGGPPGLGGLFQAGMP 109
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 38 GGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRAVT 76
GGG GGGG S GGGGGG G G PG A ++RA T
Sbjct: 155 GGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRART 193
Score = 35.4 bits (80), Expect = 0.11
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 RSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
++ G++ GGGGGG G GG GG GG
Sbjct: 143 KNNSPGTAEGCGGGGGGGGGGGSGGSGG 170
Score = 33.5 bits (75), Expect = 0.40
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 42 SGGGGSSVSGGGGG-GGAGAGGCGGPGG 68
S G GGGGG GG G+GG GG GG
Sbjct: 146 SPGTAEGCGGGGGGGGGGGSGGSGGGGG 173
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRAVTLRVLLKDALLEPGAGVLSI 95
GAGGG GGGS GG G GG GAGG GG GG +R + + L ++
Sbjct: 37 GAGGGGGAGGGSG--GGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQLPTLNFSPEQVAS 94
Query: 96 YYLGKKFLGDLQPDGRIMW 114
+ GD++ GR +W
Sbjct: 95 VCETLEETGDIERLGRFLW 113
Score = 47.0 bits (110), Expect = 4e-05
Identities = 21/35 (60%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGG-GAGAGGCGGPGG 68
A +GGG GGG GG GGG GAG GG GG GG
Sbjct: 30 ASSGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGG 64
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
N GGG +GGG +G GGGG GAGG GG G
Sbjct: 36 NGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGG 69
Score = 37.7 bits (86), Expect = 0.021
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 42 SGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
SGGG + GGG GGG+G G G GGA
Sbjct: 32 SGGGNGAGGGGGAGGGSGGGNGAGGGGA 59
Score = 30.0 bits (66), Expect = 4.5
Identities = 17/35 (48%), Positives = 17/35 (48%)
Query: 33 PNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPG 67
PN RS SS G G GGG GAGG G G
Sbjct: 17 PNFADSHHRSILLASSGGGNGAGGGGGAGGGSGGG 51
Score = 28.9 bits (63), Expect = 10.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 35 AGAGGGRSGGG-GSSVSGGGGGGGAGA 60
+G G G GGG G + GGGGGGG+ A
Sbjct: 48 SGGGNGAGGGGAGGA--GGGGGGGSRA 72
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 47.0 bits (110), Expect = 4e-05
Identities = 21/33 (63%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G+G G GGGG GGGGGGG+G GG G PGG
Sbjct: 25 GSGSGSGGGGG----GGGGGGGSGGGGGGAPGG 53
Score = 45.1 bits (105), Expect = 1e-04
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
G+GG G S SGGGGGGG G GG GG GG
Sbjct: 16 GSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGG 48
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/42 (52%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 31 ERPNAGAGGGRS---GGGGSSVSGGGGGGGAGAGGCGGPGGA 69
E+ A G G S G GS GGGGGGG G G GG GGA
Sbjct: 9 EQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGA 50
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 ERPNAGAGGGRSGGGGSSVS--GGGGGGGAGAGGCGGPGGA 69
+R + GG + G G S+ G G G G G GG GG GG+
Sbjct: 3 DRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGS 43
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 47.0 bits (110), Expect = 4e-05
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 29 DPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
+P+ G GGG GGGG SGGGG GG G GG P
Sbjct: 218 NPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRP 255
Score = 43.5 bits (101), Expect = 4e-04
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 23 DEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRR 73
++ AE P+ G+ G G GGGGGGG+G GG GG GG + R
Sbjct: 209 EQIAAEQKANPD-----GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSR 254
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 22 EDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRA 74
E +A + ++ + G GG GGGGS G GGGGG G+ P T A
Sbjct: 214 EQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEA 266
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 47.0 bits (110), Expect = 4e-05
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 29 DPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
+P+ G GGG GGGG SGGGG GG G GG P
Sbjct: 202 NPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRP 239
Score = 43.5 bits (101), Expect = 4e-04
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 23 DEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRR 73
++ AE P+ G+ G G GGGGGGG+G GG GG GG + R
Sbjct: 193 EQIAAEQKANPD-----GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSR 238
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 22 EDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRA 74
E +A + ++ + G GG GGGGS G GGGGG G+ P T A
Sbjct: 198 EQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEA 250
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 46.6 bits (109), Expect = 5e-05
Identities = 22/37 (59%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 30 PERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGP 66
P AG GGG GGGG GGG GGG G GG GGP
Sbjct: 732 PAVSGAGDGGGEEGGGGDGGGGGGDGGGGGGGG-GGP 767
Score = 38.5 bits (88), Expect = 0.013
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 15 EEAPEEDEDEAEAEDPERPNAGA-------GGGRSGGGGSSVSG--------GGGGGGAG 59
E+ ++ E++ +RP+ GA G G GG +VSG GGGG G G
Sbjct: 693 EKNRKKSENKENETLEKRPSEGAFQFKGVSGSSTCGFGGPAVSGAGDGGGEEGGGGDGGG 752
Query: 60 AGGCGGPGG 68
GG GG GG
Sbjct: 753 GGGDGGGGG 761
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 27 AEDPERPNAGAGGGRSGGGGSSVSGGGGGGG 57
A D G G G GGGG GGGGGGG
Sbjct: 737 AGDGGGEEGGGGDG-GGGGGDGGGGGGGGGG 766
>gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo
sapiens]
Length = 1137
Score = 46.6 bits (109), Expect = 5e-05
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGG 65
+ G GGG GGG GGG GGGAG+GG GG
Sbjct: 438 SVGGGGGAPGGGNGGGGGGGSGGGAGSGGAGG 469
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 39 GGRSGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
G GGGG+ G GGGGG G+GG G GGA
Sbjct: 437 GSVGGGGGAPGGGNGGGGGGGSGGGAGSGGA 467
Score = 40.4 bits (93), Expect = 0.003
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
N GGG GG + GGGGG G GAG GG GG
Sbjct: 436 NGSVGGGGGAPGGGNGGGGGGGSGGGAGS-GGAGG 469
Score = 33.9 bits (76), Expect = 0.31
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 30 PERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
P N G GGG SGGG +G GG GG +G G
Sbjct: 446 PGGGNGGGGGGGSGGG----AGSGGAGGTSSGDDG 476
>gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo
sapiens]
Length = 1121
Score = 46.6 bits (109), Expect = 5e-05
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGG 65
+ G GGG GGG GGG GGGAG+GG GG
Sbjct: 438 SVGGGGGAPGGGNGGGGGGGSGGGAGSGGAGG 469
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 39 GGRSGGGGSSVSGGGGGGGAGAGGCGGPGGA 69
G GGGG+ G GGGGG G+GG G GGA
Sbjct: 437 GSVGGGGGAPGGGNGGGGGGGSGGGAGSGGA 467
Score = 40.4 bits (93), Expect = 0.003
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 NAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGG 68
N GGG GG + GGGGG G GAG GG GG
Sbjct: 436 NGSVGGGGGAPGGGNGGGGGGGSGGGAGS-GGAGG 469
Score = 33.9 bits (76), Expect = 0.31
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 30 PERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCG 64
P N G GGG SGGG +G GG GG +G G
Sbjct: 446 PGGGNGGGGGGGSGGG----AGSGGAGGTSSGDDG 476
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 46.2 bits (108), Expect = 6e-05
Identities = 26/61 (42%), Positives = 29/61 (47%)
Query: 2 AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAG 61
AA P+GG+ + A A A G R GGGG GGGGGGGAGAG
Sbjct: 373 AAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
Query: 62 G 62
G
Sbjct: 433 G 433
Score = 33.9 bits (76), Expect = 0.31
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 7 LSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGG-GGAGAGGCGG 65
L GG G +E+ + AE AG SG G S+ GG GG GG+ A G G
Sbjct: 125 LRSPGGLGAAQLKENNGKGYAESGSA--AGTTTSASGSGLGSLHGGSGGSGGSAALGGSG 182
Query: 66 PGGALTRR 73
G RR
Sbjct: 183 SGADQVRR 190
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 36 GAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRAVTLRVLLKDALLEP 88
G GGG GGGG + +GGG G A G L A VL K A+ P
Sbjct: 417 GGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAA---VLSKTAVSPP 466
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/51 (47%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 36 GAGGGRSGGGG-------------SSVSGGGGGGGAGAGGCGGPGGALTRR 73
G GGG GGGG S GGGGGGG G GG GG GG R
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR 60
Score = 42.4 bits (98), Expect = 9e-04
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRA 74
+GAGGG GGGG GGGGGGG GG A++ A
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGGTAMRILGGVISAISEAA 73
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 47 SSVSGGGGGGGAGAGGCGGPGGAL 70
S + GGGGGGG G G GG G L
Sbjct: 6 SFLKGGGGGGGGGGGLGGGLGNVL 29
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/51 (47%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 36 GAGGGRSGGGG-------------SSVSGGGGGGGAGAGGCGGPGGALTRR 73
G GGG GGGG S GGGGGGG G GG GG GG R
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMR 60
Score = 42.4 bits (98), Expect = 9e-04
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGALTRRA 74
+GAGGG GGGG GGGGGGG GG A++ A
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGGTAMRILGGVISAISEAA 73
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 47 SSVSGGGGGGGAGAGGCGGPGGAL 70
S + GGGGGGG G G GG G L
Sbjct: 6 SFLKGGGGGGGGGGGLGGGLGNVL 29
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,571,945
Number of Sequences: 37866
Number of extensions: 1340340
Number of successful extensions: 28942
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 12302
Number of HSP's gapped (non-prelim): 8617
length of query: 451
length of database: 18,247,518
effective HSP length: 106
effective length of query: 345
effective length of database: 14,233,722
effective search space: 4910634090
effective search space used: 4910634090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.