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Search of human proteins with 229331971
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|229331971 RIO kinase 2 isoform 2 [Homo sapiens]
(474 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|229331971 RIO kinase 2 isoform 2 [Homo sapiens] 960 0.0
gi|229331967 RIO kinase 2 isoform 1 [Homo sapiens] 945 0.0
gi|23510356 RIO kinase 1 isoform 1 [Homo sapiens] 61 2e-09
gi|22325377 sudD suppressor of bimD6 homolog [Homo sapiens] 50 6e-06
gi|23510358 RIO kinase 1 isoform 2 [Homo sapiens] 48 2e-05
gi|118600963 Nik related kinase [Homo sapiens] 41 0.003
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 40 0.005
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 40 0.005
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 40 0.006
gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens] 39 0.010
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens] 39 0.013
gi|162287219 prune homolog 2 [Homo sapiens] 36 0.087
gi|15451902 mitogen-activated protein kinase kinase kinase kinas... 35 0.11
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 34 0.25
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 34 0.25
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.25
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.25
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.25
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.25
gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.25
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.25
gi|4504487 histidine rich calcium binding protein precursor [Hom... 34 0.33
gi|47157322 protein kinase C, beta isoform 1 [Homo sapiens] 33 0.43
gi|20127450 protein kinase C, beta isoform 2 [Homo sapiens] 33 0.43
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 33 0.56
gi|4506067 protein kinase C, alpha [Homo sapiens] 33 0.74
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 33 0.74
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 33 0.74
gi|23308722 TTK protein kinase [Homo sapiens] 33 0.74
gi|21361639 DIPB protein [Homo sapiens] 33 0.74
>gi|229331971 RIO kinase 2 isoform 2 [Homo sapiens]
Length = 474
Score = 960 bits (2481), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK 60
MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK
Sbjct: 1 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK 60
Query: 61 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF 120
LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF
Sbjct: 61 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF 120
Query: 121 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID 180
ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID
Sbjct: 121 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID 180
Query: 181 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD 240
YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD
Sbjct: 181 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD 240
Query: 241 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV 300
HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV
Sbjct: 241 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV 300
Query: 301 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 360
SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE
Sbjct: 301 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 360
Query: 361 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK 420
ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
Sbjct: 361 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK 420
Query: 421 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRYRLLSIAF 474
NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRYRLLSIAF
Sbjct: 421 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRYRLLSIAF 474
>gi|229331967 RIO kinase 2 isoform 1 [Homo sapiens]
Length = 552
Score = 945 bits (2443), Expect = 0.0
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK 60
MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK
Sbjct: 1 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK 60
Query: 61 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF 120
LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF
Sbjct: 61 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF 120
Query: 121 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID 180
ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID
Sbjct: 121 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID 180
Query: 181 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD 240
YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD
Sbjct: 181 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD 240
Query: 241 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV 300
HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV
Sbjct: 241 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV 300
Query: 301 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 360
SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE
Sbjct: 301 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 360
Query: 361 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK 420
ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
Sbjct: 361 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK 420
Query: 421 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFR 466
NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFR
Sbjct: 421 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFR 466
>gi|23510356 RIO kinase 1 isoform 1 [Homo sapiens]
Length = 568
Score = 61.2 bits (147), Expect = 2e-09
Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 83 LALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFALKLHRLGRTSFRNLKNKRDY- 141
+ L + +R ++ + + GKE+++Y + G+ A+K+++ TS K++ Y
Sbjct: 168 MILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAIKIYK---TSILVFKDRDKYV 224
Query: 142 ---HKHRHNV---SWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELI--NG 193
+ RH + + + A KE + L + P P+PI H +VM I +
Sbjct: 225 SGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDD 284
Query: 194 YPLCQIHHVEDPASVYDEAMELIVKLANH--------GLIHGDFNEFNLILDESDHITMI 245
P + +V+ S +A EL +++ + L+H D +EFN++ + +I
Sbjct: 285 MPAPLLKNVQLSES---KARELYLQVIQYMRRMYQDARLVHADLSEFNMLY-HGGGVYII 340
Query: 246 DFPQMVSTSHPNAEWYFDRDVKCIKDFFMK 275
D Q V HP+A + +D + DFFM+
Sbjct: 341 DVSQSVEHDHPHALEFLRKDCANVNDFFMR 370
>gi|22325377 sudD suppressor of bimD6 homolog [Homo sapiens]
Length = 519
Score = 49.7 bits (117), Expect = 6e-06
Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 33/286 (11%)
Query: 73 YRLTNAGYDYLALKTLSSRQ---VVESVGNQMGVGKESDIYIVANEEGQQFALKLHRLGR 129
Y++ N+G +S+ + V + G M KE D ++ E A+K+ +
Sbjct: 242 YKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKE-DSKVIPTE----CAIKVFKTTL 296
Query: 130 TSFRNL-KNKRDYHKHRHNVSWLY---LSRLSAMKEFAYMKALYERKFPVPKPIDYNRHA 185
F+N K +D + + S L + R+ A KE + + P P + +H
Sbjct: 297 NEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHI 356
Query: 186 VVMELI--NGYPLCQIHHV----EDPASVYDEAMELIVKLANH-GLIHGDFNEFNLILDE 238
+VM I + P ++ V E+ Y + + L+ +L + L+H D +E+N++
Sbjct: 357 LVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLW-H 415
Query: 239 SDHITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDV 298
+ + +ID Q V +HP+ + RD + + FF K K+ E L
Sbjct: 416 AGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK---------GGVKEALSERELFN 466
Query: 299 EVSASGYTKEMQAD----DELLHPLGPDDKNIETKEGSEFSFSDGE 340
VS T + +AD E L + D ++ + F DG+
Sbjct: 467 AVSGLNITADNEADFLAEIEALEKMNEDHVQKNGRKAASFLKDDGD 512
>gi|23510358 RIO kinase 1 isoform 2 [Homo sapiens]
Length = 327
Score = 48.1 bits (113), Expect = 2e-05
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 158 AMKEFAYMKALYERKFPVPKPIDYNRHAVVMELI--NGYPLCQIHHVEDPASVYDEAMEL 215
A KE + L + P P+PI H +VM I + P + +V+ S +A EL
Sbjct: 6 AEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSES---KAREL 62
Query: 216 IVKLANH--------GLIHGDFNEFNLILDESDHITMIDFPQMVSTSHPNAEWYFDRDVK 267
+++ + L+H D +EFN++ + +ID Q V HP+A + +D
Sbjct: 63 YLQVIQYMRRMYQDARLVHADLSEFNMLY-HGGGVYIIDVSQSVEHDHPHALEFLRKDCA 121
Query: 268 CIKDFFMK 275
+ DFFM+
Sbjct: 122 NVNDFFMR 129
>gi|118600963 Nik related kinase [Homo sapiens]
Length = 1582
Score = 40.8 bits (94), Expect = 0.003
Identities = 41/217 (18%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 96 SVGNQMGVGKESDIYIVANEEGQQF-ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYL- 153
S+ +G+G IY+ +E+ F A+K+ +T + + +K++ +V W Y
Sbjct: 26 SLDKTIGLGTYGRIYLGLHEKTGAFTAVKVMNARKTPLPEIGRRVRVNKYQKSVGWRYSD 85
Query: 154 ------SRLSAMKEFAYMK---ALYERKFPVPKPIDYNRHAVVMELINGYPLCQIHHVED 204
+ L+ ++++++ K + Y F + P ++ +VMEL + + +
Sbjct: 86 EEEDLRTELNLLRKYSFHKNIVSFYGAFFKLSPPGQRHQLWMVMELCAAGSVTDVVRMTS 145
Query: 205 PASVYD--------EAMELIVKLANHGLIHGDFNEFNLILDESDHITMIDFPQMVSTSHP 256
S+ + E ++ + L H +IH D N++L + + ++DF S
Sbjct: 146 NQSLKEDWIAYICREILQGLAHLHAHRVIHRDIKGQNVLLTHNAEVKLVDFGVSAQVSRT 205
Query: 257 NAE---------WYFDRDVKCIKDFFMKRFSYESELF 284
N W + C +D + + Y S+++
Sbjct: 206 NGRRNSFIGTPYWMAPEVIDCDED-PRRSYDYRSDVW 241
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 40.0 bits (92), Expect = 0.005
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 293 EDTLDVEVSAS-GYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSE 351
ED L+ E G TKE + DD D ++++GSE F + + + + GSE
Sbjct: 522 EDDLNKESEEEVGPTKESEEDDSEKES-DEDCSEKQSEDGSEREFEENGLEKDLDEEGSE 580
Query: 352 NESERNCLE------ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKG 405
E N L+ +SE G E++ ++ SE D S E E E++
Sbjct: 581 KELHENVLDKELEENDSENSEFEDDGS-EKVLDEEGSEREFDEDSDEKEEEEDTYEKVFD 639
Query: 406 QVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEYEDE 448
+ E+++EK + + + SD+ EDE
Sbjct: 640 DESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDE 682
Score = 32.7 bits (73), Expect = 0.74
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 322 DDKNIE-TKEGSEFSFSDGEVAEKAEVYGSENESERNC--LEESEGCYCRSSGDPEQIKE 378
D+K E T++G EF +G A+ E E+E C E EGC P++ E
Sbjct: 427 DEKKFEKTEDGGEFE--EGASENNAKESSPEKEAEEGCPEKESEEGC-------PKRGFE 477
Query: 379 DSLSE-ESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGG 437
S S+ ES + +E + +E K + ++N+ E K ++ N++ + V
Sbjct: 478 GSCSQKESEEGNPVRGSEEDSPKKESKKKTLKND-CEENGLAKESEDDLNKESEEEVGPT 536
Query: 438 VPAGSDEYEDE 448
+ D+ E E
Sbjct: 537 KESEEDDSEKE 547
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 40.0 bits (92), Expect = 0.005
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 293 EDTLDVEVSAS-GYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSE 351
ED L+ E G TKE + DD D ++++GSE F + + + + GSE
Sbjct: 522 EDDLNKESEEEVGPTKESEEDDSEKES-DEDCSEKQSEDGSEREFEENGLEKDLDEEGSE 580
Query: 352 NESERNCLE------ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKG 405
E N L+ +SE G E++ ++ SE D S E E E++
Sbjct: 581 KELHENVLDKELEENDSENSEFEDDGS-EKVLDEEGSEREFDEDSDEKEEEEDTYEKVFD 639
Query: 406 QVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEYEDE 448
+ E+++EK + + + SD+ EDE
Sbjct: 640 DESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDE 682
Score = 32.7 bits (73), Expect = 0.74
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 322 DDKNIE-TKEGSEFSFSDGEVAEKAEVYGSENESERNC--LEESEGCYCRSSGDPEQIKE 378
D+K E T++G EF +G A+ E E+E C E EGC P++ E
Sbjct: 427 DEKKFEKTEDGGEFE--EGASENNAKESSPEKEAEEGCPEKESEEGC-------PKRGFE 477
Query: 379 DSLSE-ESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGG 437
S S+ ES + +E + +E K + ++N+ E K ++ N++ + V
Sbjct: 478 GSCSQKESEEGNPVRGSEEDSPKKESKKKTLKND-CEENGLAKESEDDLNKESEEEVGPT 536
Query: 438 VPAGSDEYEDE 448
+ D+ E E
Sbjct: 537 KESEEDDSEKE 547
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 39.7 bits (91), Expect = 0.006
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 323 DKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKEDSLS 382
++N E +EG E +GE E E +R EE EG + G+ E+++ +
Sbjct: 722 ERNQEMEEGGEEEHGEGE----------EEEGDREEEEEKEG-EGKEEGEGEEVEGEREK 770
Query: 383 EESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGG-VPAG 441
EE E + +A +E KG+ E E EE+ +++G V+GG V G
Sbjct: 771 EEG------ERKKEERAGKEEKGE--EEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEG 822
Query: 442 SDEYEDE 448
E E+E
Sbjct: 823 KGEREEE 829
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 327 ETKEGSEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKEDSLSEESA 386
E +EG E +GE E+ E G E E E E EG G+ E+ +E+ E
Sbjct: 991 EEEEGEEEGEEEGEGEEEGEGEG-EEEEEGEVEGEVEGEEGEGEGEEEEGEEEG-EEREK 1048
Query: 387 DARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAG 441
+ E + EE +G+ E EE R + + +++G V G
Sbjct: 1049 EGEGEENRRNREEEEEEEGKYQETG-----EEENERQDGEEYKKVSKIKGSVKYG 1098
Score = 30.8 bits (68), Expect = 2.8
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 22/156 (14%)
Query: 322 DDKNIETKEGSEFSFSDGEVAEKAEV-----------YGSENESERNCLE---ESEGCYC 367
+++ E EG E +GE E+ EV G E E E E E EG
Sbjct: 996 EEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEEN 1055
Query: 368 RSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYN 427
R + + E+ +E E + + E + + +IKG V T + T+
Sbjct: 1056 RRNREEEEEEEGKYQETGEEENERQDGEEYKKVSKIKGSVKYGKHKTYQKKSVTNTQGNG 1115
Query: 428 RQ-------DGQRVQGGVPAGSDEY-EDECPHLIAL 455
++ +R+ P+GS ++ + PH + L
Sbjct: 1116 KEQRSKMPVQSKRLLKNGPSGSKKFWNNVLPHYLEL 1151
Score = 30.4 bits (67), Expect = 3.7
Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 7/158 (4%)
Query: 291 RREDTLDVEVSASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGS 350
++E+ E + + ++E G + + EG E GE E+ E
Sbjct: 776 KKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEG 835
Query: 351 ENESERNCLEESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVEN 410
E E EE EG G E+ E+ EE + E E EE +G+ E
Sbjct: 836 EEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEE-----EEGEGE-GEE 889
Query: 411 NSVTEFSEEKNRTENYNRQDGQ-RVQGGVPAGSDEYED 447
E EE+ E +G+ + G G +E E+
Sbjct: 890 EGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEE 927
>gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]
Length = 712
Score = 38.9 bits (89), Expect = 0.010
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 25/163 (15%)
Query: 99 NQMGVGKESDIYIVANEEGQQF-ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLS 157
+ +G G +Y V GQ A+K L +F K+K+D N+ +S L+
Sbjct: 523 DHLGSGAFGCVYKVRKHSGQNLLAMKEVNLHNPAFG--KDKKDRDSSVRNI----VSELT 576
Query: 158 AMKEFAYMKAL--YERKFPVPKPIDYNRHAVVMELINGYPLCQI-------HHVEDPASV 208
+KE Y + Y + F ++ +R +VMELI G PL + HH +
Sbjct: 577 IIKEQLYHPNIVRYYKTF-----LENDRLYIVMELIEGAPLGEHFSSLKEKHHHFTEERL 631
Query: 209 YDEAMELIVKLA----NHGLIHGDFNEFNLILDESDHITMIDF 247
+ ++L + L ++H D N++L + D +T+ DF
Sbjct: 632 WKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDF 674
>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
Length = 1282
Score = 38.5 bits (88), Expect = 0.013
Identities = 40/184 (21%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 279 YESELFPTFKDIRR----EDTLDVEVSASGYTKEMQADDELLHPLGPDDKNIE----TKE 330
++ E+ PT + ++ T+D ++++S T + +D + PLG +D + + KE
Sbjct: 362 FQDEVGPTHELVQSLISTHSTIDAKMASSRVT--LFSDSK---PLGSEDIDNQGLMMPKE 416
Query: 331 GSEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKEDSLSEESADARS 390
+ + G + KA ++G E+ES + EE + + + ++ S EE+ + +
Sbjct: 417 EKQMDLNTGRMRRKA-IFGDEDESGDSDDEEDD-----EMSEDDGLENGSSDEEAEEEEN 470
Query: 391 FEMTEFNQALEEIKGQVVENNSVTE-----FSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
EMT+ A++ IK + +E +E F++ + E + ++G+ + A
Sbjct: 471 AEMTDQYMAVKGIKRRKLELEEDSEMDLPAFADSDDDLERSSAEEGEAEE----ADESSE 526
Query: 446 EDEC 449
E++C
Sbjct: 527 EEDC 530
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 35.8 bits (81), Expect = 0.087
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 301 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 360
+ASG +++ Q+D EL ++ E E G+++ A + + E LE
Sbjct: 1351 NASGISEKGQSDQEL--------SSLVASEHQEICIKSGKISSLAVTFSPQTEEPEEVLE 1402
Query: 361 ESEGCYCRSSGDPEQ-IKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEE 419
EG Y S D + + D+L + + + E + V+ ++
Sbjct: 1403 YEEGSYNLDSRDVQTGMSADNLQPKDTHEKHLMSQRNSGETTETSDGMNFTKYVSVPEKD 1462
Query: 420 KNRTENYNRQDGQRVQGGVP 439
+TE N + + V GG P
Sbjct: 1463 LEKTEECNFLEPENVGGGPP 1482
>gi|15451902 mitogen-activated protein kinase kinase kinase kinase 3
[Homo sapiens]
Length = 894
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 186 VVMELINGYPLCQIHHVEDPAS------VYDEAMELIVKLANHGLIHGDFNEFNLILDES 239
+ ME G L I+HV P S V E ++ + L + G +H D N++L ++
Sbjct: 88 ICMEFCGGGSLQDIYHVTGPLSELQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDN 147
Query: 240 DHITMIDF 247
H+ + DF
Sbjct: 148 GHVKLADF 155
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 34.3 bits (77), Expect = 0.25
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 260 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 319
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGS--- 442
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 320 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 377
Query: 443 -DEYEDECPHLIAL 455
+Y + P L+ +
Sbjct: 378 EGDYVPDSPALLPI 391
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 34.3 bits (77), Expect = 0.25
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 270 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 329
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGS--- 442
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 330 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 387
Query: 443 -DEYEDECPHLIAL 455
+Y + P L+ +
Sbjct: 388 EGDYVPDSPALLPI 401
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 34.3 bits (77), Expect = 0.25
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 261 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 320
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 321 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 378
Query: 446 E-DECPHLIALSSL 458
E D P ALS +
Sbjct: 379 EGDYVPDSPALSPI 392
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 34.3 bits (77), Expect = 0.25
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 270 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 329
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 330 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 387
Query: 446 E-DECPHLIALSSL 458
E D P ALS +
Sbjct: 388 EGDYVPDSPALSPI 401
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
5 [Homo sapiens]
Length = 748
Score = 34.3 bits (77), Expect = 0.25
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 238 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 297
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 298 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 355
Query: 446 E-DECPHLIALSSL 458
E D P ALS +
Sbjct: 356 EGDYVPDSPALSPI 369
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
4 [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.25
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 227 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 286
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 287 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 344
Query: 446 E-DECPHLIALSSL 458
E D P ALS +
Sbjct: 345 EGDYVPDSPALSPI 358
>gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isoform
3 [Homo sapiens]
Length = 526
Score = 34.3 bits (77), Expect = 0.25
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 16 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 75
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 76 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 133
Query: 446 E-DECPHLIALSSL 458
E D P ALS +
Sbjct: 134 EGDYVPDSPALSPI 147
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
2 [Homo sapiens]
Length = 782
Score = 34.3 bits (77), Expect = 0.25
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 332 SEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKED------SLSEES 385
SE S E + GSE E E EE EG S + E+ +E+ S SEE+
Sbjct: 272 SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEA 331
Query: 386 ADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEY 445
++ + E++E + + E + + EN+ + +R + + + V G P S
Sbjct: 332 SEQSAEEVSE--EEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALT 389
Query: 446 E-DECPHLIALSSL 458
E D P ALS +
Sbjct: 390 EGDYVPDSPALSPI 403
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 33.9 bits (76), Expect = 0.33
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 2/130 (1%)
Query: 322 DDKNIETKEGS-EFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKEDS 380
++K E GS E E EK +GS ++ + EE G + E+ KE+
Sbjct: 484 EEKEKEEDPGSHEEDDESSEQGEKGTHHGSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEE 543
Query: 381 LSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPA 440
EE + R E E L + E +E T N D + GG +
Sbjct: 544 EEEEDEERRE-ERAEVGAPLSPDHSEEEEEEEEGLEEDEPRFTIIPNPLDRREEAGGASS 602
Query: 441 GSDEYEDECP 450
+ ED P
Sbjct: 603 EEESGEDTGP 612
>gi|47157322 protein kinase C, beta isoform 1 [Homo sapiens]
Length = 671
Score = 33.5 bits (75), Expect = 0.43
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 187 VMELING----YPLCQIHHVEDPASVYDEAMELIVKL---ANHGLIHGDFNEFNLILDES 239
VME +NG Y + Q+ ++P +V+ A E+ + L + G+I+ D N++LD
Sbjct: 419 VMEYVNGGDLMYHIQQVGRFKEPHAVF-YAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSE 477
Query: 240 DHITMIDF 247
HI + DF
Sbjct: 478 GHIKIADF 485
>gi|20127450 protein kinase C, beta isoform 2 [Homo sapiens]
Length = 673
Score = 33.5 bits (75), Expect = 0.43
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 187 VMELING----YPLCQIHHVEDPASVYDEAMELIVKL---ANHGLIHGDFNEFNLILDES 239
VME +NG Y + Q+ ++P +V+ A E+ + L + G+I+ D N++LD
Sbjct: 419 VMEYVNGGDLMYHIQQVGRFKEPHAVF-YAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSE 477
Query: 240 DHITMIDF 247
HI + DF
Sbjct: 478 GHIKIADF 485
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 33.1 bits (74), Expect = 0.56
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 301 SASGYTKEMQADDELLHPLGPDDKNIETKEGSE-FSFSDGEVAEKAEVYGSENESERNCL 359
S G Q D+E ++ + +++ + ++ E + +GEV G +N+S++ L
Sbjct: 18 SLRGNPSSSQVDEEQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPRPGGQNDSQQGQL 77
Query: 360 EESEGCYCR----SSGDPEQIKEDSLSEESADARSFEMTEFNQALEEI--------KGQV 407
EE+ + SSG+ E+ +ED D E E +Q ++ + +
Sbjct: 78 EENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSREDEH 137
Query: 408 VENNSVTEFS 417
NSVT S
Sbjct: 138 THTNSVTNSS 147
>gi|4506067 protein kinase C, alpha [Homo sapiens]
Length = 672
Score = 32.7 bits (73), Expect = 0.74
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 187 VMELING----YPLCQIHHVEDPASVYDEAMELIVKLA---NHGLIHGDFNEFNLILDES 239
VME +NG Y + Q+ ++P +V+ A E+ + L G+I+ D N++LD
Sbjct: 416 VMEYVNGGDLMYHIQQVGKFKEPQAVF-YAAEISIGLFFLHKRGIIYRDLKLDNVMLDSE 474
Query: 240 DHITMIDF 247
HI + DF
Sbjct: 475 GHIKIADF 482
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 32.7 bits (73), Expect = 0.74
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 289 DIRREDTLDVEVSASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVY 348
D ED+ + ++E QAD E L +++ E+ E S +G + +
Sbjct: 382 DSSEEDSSHTLSHSKSESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSS--- 438
Query: 349 GSENESERNCLEESEGCYCRSSGDPEQIKEDSLSEES 385
+E++SE + EE + S D + KEDS S ES
Sbjct: 439 SAESQSEESHSEEDDS----DSQDSSRSKEDSNSTES 471
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 32.7 bits (73), Expect = 0.74
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 289 DIRREDTLDVEVSASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVY 348
D ED+ + ++E QAD E L +++ E+ E S +G + +
Sbjct: 366 DSSEEDSSHTLSHSKSESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSS--- 422
Query: 349 GSENESERNCLEESEGCYCRSSGDPEQIKEDSLSEES 385
+E++SE + EE + S D + KEDS S ES
Sbjct: 423 SAESQSEESHSEEDDS----DSQDSSRSKEDSNSTES 455
>gi|23308722 TTK protein kinase [Homo sapiens]
Length = 857
Score = 32.7 bits (73), Expect = 0.74
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 40/178 (22%)
Query: 84 ALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFALKLHRLGRTSFRNLKNKRDYHK 143
A + +S + + S+ Q+G G S ++ V NE+ Q +A+K L + L + R+
Sbjct: 514 ANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--- 570
Query: 144 HRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELINGYPLCQIHHVE 203
E AY+ L + + + DY + + I Y + + +++
Sbjct: 571 -----------------EIAYLNKLQQHSDKIIRLYDYE---ITDQYI--YMVMECGNID 608
Query: 204 -----------DP---ASVYDEAMELIVKLANHGLIHGDFNEFNLILDESDHITMIDF 247
DP S + +E + + HG++H D N ++ + + +IDF
Sbjct: 609 LNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 665
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 32.7 bits (73), Expect = 0.74
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 337 SDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEF 396
+DGE A K E +E + E+ ESE +G+ + +E+S SEE ++ E
Sbjct: 71 ADGEGAGKEE---AEVKVEQEREIESE------AGEESESEEESESEEESETEEESEDES 121
Query: 397 NQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEYEDE 448
++ EE + +E+ E+++ E N+++G+ G E++ E
Sbjct: 122 DEESEEDSEEEMED-------EQESEAEEDNQEEGESEAEGETEAESEFDPE 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,255,002
Number of Sequences: 37866
Number of extensions: 755521
Number of successful extensions: 2747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 191
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.