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Search of human proteins with 228008396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
(464 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 964 0.0
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 964 0.0
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 957 0.0
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 938 0.0
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 873 0.0
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 847 0.0
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 785 0.0
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 785 0.0
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 779 0.0
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 779 0.0
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] 356 2e-98
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] 340 1e-93
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 334 9e-92
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 334 9e-92
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 333 2e-91
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 318 9e-87
gi|34740339 dead end homolog 1 [Homo sapiens] 134 1e-31
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 103 4e-22
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 94 3e-19
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 94 3e-19
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 94 3e-19
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 89 8e-18
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 86 5e-17
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 86 9e-17
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 82 8e-16
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 78 2e-14
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 78 2e-14
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 77 3e-14
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 77 3e-14
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 77 4e-14
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 964 bits (2491), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 458
Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 459 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 518
Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ
Sbjct: 519 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 562
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 964 bits (2491), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ
Sbjct: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 957 bits (2474), Expect = 0.0
Identities = 463/464 (99%), Positives = 463/464 (99%), Gaps = 1/464 (0%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 458
Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 459 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 518
Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
GRAGYSQRGGPGSARGVRGARGGAQQQRGRG GKGVEAGPDLLQ
Sbjct: 519 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG-GKGVEAGPDLLQ 561
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 938 bits (2424), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 458
Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 459 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 518
Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 451
GRAGYSQRGGPGSARGVRGARGGAQQQRGRG
Sbjct: 519 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 549
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 873 bits (2256), Expect = 0.0
Identities = 429/464 (92%), Positives = 429/464 (92%), Gaps = 35/464 (7%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKTAAQ VK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 423
Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 424 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 483
Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 464
GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ
Sbjct: 484 GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ 527
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 847 bits (2189), Expect = 0.0
Identities = 416/451 (92%), Positives = 416/451 (92%), Gaps = 35/451 (7%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKTAAQ VK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360
ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 423
Query: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420
DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 424 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 483
Query: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 451
GRAGYSQRGGPGSARGVRGARGGAQQQRGRG
Sbjct: 484 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 514
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 785 bits (2026), Expect = 0.0
Identities = 383/457 (83%), Positives = 417/457 (91%), Gaps = 7/457 (1%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 359
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
Query: 360 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 416
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
Query: 417 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 785 bits (2026), Expect = 0.0
Identities = 383/457 (83%), Positives = 417/457 (91%), Gaps = 7/457 (1%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 281
Query: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 282 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 341
Query: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 359
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 461
Query: 360 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 416
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 462 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 520
Query: 417 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 521 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 779 bits (2012), Expect = 0.0
Identities = 383/460 (83%), Positives = 417/460 (90%), Gaps = 10/460 (2%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 177
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
Query: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 297
KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
Query: 298 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 356
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
Query: 357 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 413
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
Query: 414 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 779 bits (2012), Expect = 0.0
Identities = 383/460 (83%), Positives = 417/460 (90%), Gaps = 10/460 (2%)
Query: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161
Query: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 177
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 281
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 341
Query: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 297
KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 342 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 401
Query: 298 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 356
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 402 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 461
Query: 357 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 413
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 462 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 520
Query: 414 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 521 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 560
>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
Length = 593
Score = 356 bits (914), Expect = 2e-98
Identities = 211/455 (46%), Positives = 277/455 (60%), Gaps = 51/455 (11%)
Query: 13 KVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKI 71
KV + G P+EA + AL+ERTGY++ GQRKYGGPPP + G P G E+FVGKI
Sbjct: 21 KVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGKI 78
Query: 72 PRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIR 131
PRD++EDELVP+FE G I++LRLMMD G NRGYAFV +C K A+ AV+ NN+EIR
Sbjct: 79 PRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIR 137
Query: 132 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFC 191
G+ +GVC SV N RLF+G IPK K +E+ILEE +KVTEG+ DVI+Y DK KNRGF
Sbjct: 138 PGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 197
Query: 192 FLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTV 251
F+EYE H+ AA ARR+LM G++++WG+ V+WA+P D D +VM VK+L+VRNL
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIET 257
Query: 252 TEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 309
TE+ ++K+F QF G +ERVKK++DYAF+HF R+ AV AM +NG +LEG +E+ AK
Sbjct: 258 TEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK 317
Query: 310 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDY- 368
P D KE+ ++ Q A RG G P Y + Y
Sbjct: 318 PVD---KEQYSRYQKA---------------------ARGGGAAEAAQQPSYVYSCDPYT 353
Query: 369 YDYYGYDYHNYRGGYEDPYYGYEDFQVGA-RGRGGRGARGAAPSRGRGAAPPRGRAGYSQ 427
YYGY Y+ G D + + G+ RGRG RGAA +R G PRG S
Sbjct: 354 LAYYGYPYNALIGPNRDYF-----VKAGSIRGRG----RGAAGNRAPG---PRG----SY 397
Query: 428 RGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDL 462
GG + RG+ + +G+ Q KG E P+L
Sbjct: 398 LGGYSAGRGIYSR---YHEGKGKQQEKGYELVPNL 429
>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
Length = 524
Score = 340 bits (873), Expect = 1e-93
Identities = 187/390 (47%), Positives = 246/390 (63%), Gaps = 31/390 (7%)
Query: 13 KVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKI 71
KV + G P+EA + AL+ERTGY++ GQRKYGGPPP + G P G E+FVGKI
Sbjct: 21 KVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGKI 78
Query: 72 PRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIR 131
PRD++EDELVP+FE G I++LRLMMD G NRGYAFV +C K A+ AV+ NN+EIR
Sbjct: 79 PRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIR 137
Query: 132 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFC 191
G+ +GVC SV N RLF+G IPK K +E+ILEE +KVTEG+ DVI+Y DK KNRGF
Sbjct: 138 PGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 197
Query: 192 FLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTV 251
F+EYE H+ AA ARR+LM G++++WG+ V+WA+P D D +VM VK+L+VRNL
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIET 257
Query: 252 TEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 309
TE+ ++K+F QF G +ERVKK++DYAF+HF R+ AV AM +NG +LEG +E+ AK
Sbjct: 258 TEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK 317
Query: 310 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDY- 368
P D KE+ ++ Q A RG G P Y + Y
Sbjct: 318 PVD---KEQYSRYQKA---------------------ARGGGAAEAAQQPSYVYSCDPYT 353
Query: 369 YDYYGYDYHNYRGGYEDPYYGYEDFQVGAR 398
YYGY Y+ G D + +GA+
Sbjct: 354 LAYYGYPYNALIGPNRDYFVKVAIPAIGAQ 383
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 334 bits (857), Expect = 9e-92
Identities = 185/417 (44%), Positives = 253/417 (60%), Gaps = 24/417 (5%)
Query: 9 KQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFV 68
K G ++ + K EA ++AL++RTGY+L GQRKYGGPPP + P G EIF+
Sbjct: 6 KSGDGLSGTQK---EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFI 60
Query: 69 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 128
GK+PRDLFEDEL+PL EK G I+++R+MMD G NRGYAFVTF K A+ A+K NN+
Sbjct: 61 GKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119
Query: 129 EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR 188
EIR+G+ +GVC SV N RLFVG IPK+K +E+IL E KVTEG+ DVI+Y DK KNR
Sbjct: 120 EIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNR 179
Query: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLA 248
GF F+EYE H+ AA ARR+L+ G++++WG+ V+WA+P + D + M+ VK+L+VRNL
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 249 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 306
+ +EE++EK F+ G +ERVKK++DYAF+HF R+ AV+AM+ +NGK L+G IE+
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 299
Query: 307 FAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYE 366
AKP D+ R + + M Y Y + PT Y P +Y +
Sbjct: 300 LAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTT--------TYLGAPVFYAPQ 351
Query: 367 DYYDYYGYDYHNYRGGYEDPYY--------GYEDFQVGARGRGGRGARGAAPSRGRG 415
Y + +G + Y + VGA G G G RG G G
Sbjct: 352 TYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYLAYTGLG 408
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 334 bits (857), Expect = 9e-92
Identities = 183/409 (44%), Positives = 250/409 (61%), Gaps = 16/409 (3%)
Query: 9 KQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFV 68
K G ++ + K EA ++AL++RTGY+L GQRKYGGPPP + P G EIF+
Sbjct: 6 KSGDGLSGTQK---EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFI 60
Query: 69 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 128
GK+PRDLFEDEL+PL EK G I+++R+MMD G NRGYAFVTF K A+ A+K NN+
Sbjct: 61 GKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119
Query: 129 EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR 188
EIR+G+ +GVC SV N RLFVG IPK+K +E+IL E KVTEG+ DVI+Y DK KNR
Sbjct: 120 EIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNR 179
Query: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLA 248
GF F+EYE H+ AA ARR+L+ G++++WG+ V+WA+P + D + M+ VK+L+VRNL
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239
Query: 249 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 306
+ +EE++EK F+ G +ERVKK++DYAF+HF R+ AV+AM+ +NGK L+G IE+
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 299
Query: 307 FAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYE 366
AKP D+ R + + M Y Y + PT Y P +Y +
Sbjct: 300 LAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTT--------TYLGAPVFYAPQ 351
Query: 367 DYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 415
Y + +G + GA G G G RG G G
Sbjct: 352 TYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRGYLAYTGLG 400
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 333 bits (854), Expect = 2e-91
Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 5/300 (1%)
Query: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 81
+EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV
Sbjct: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78
Query: 82 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 141
P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S
Sbjct: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137
Query: 142 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 201
+ N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A
Sbjct: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197
Query: 202 AQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 261
A ARR+L+ G ++WG+ V+WADP ++ D E M +VKVL+VRNL + TEE ++ F+
Sbjct: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257
Query: 262 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 319
+F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+
Sbjct: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 318 bits (814), Expect = 9e-87
Identities = 172/381 (45%), Positives = 232/381 (60%), Gaps = 13/381 (3%)
Query: 37 LDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLM 96
L+ GQRKYGGPPP + P G EIF+GK+PRDLFEDEL+PL EK G I+++R+M
Sbjct: 39 LEKENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMM 96
Query: 97 MDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSK 156
MD G NRGYAFVTF K A+ A+K NN+EIR+G+ +GVC SV N RLFVG IPK+K
Sbjct: 97 MD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTK 155
Query: 157 TKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVW 216
+E+IL E KVTEG+ DVI+Y DK KNRGF F+EYE H+ AA ARR+L+ G++++W
Sbjct: 156 KREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLW 215
Query: 217 GNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD 274
G+ V+WA+P + D + M+ VK+L+VRNL + +EE++EK F+ G +ERVKK++D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275
Query: 275 YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYY 334
YAF+HF R+ AV+AM+ +NGK L+G IE+ AKP D+ R + + M Y
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEY 335
Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQ 394
Y + PT Y P +Y + Y + +G +
Sbjct: 336 TYSLGQVYDPTT--------TYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSV 387
Query: 395 VGARGRGGRGARGAAPSRGRG 415
GA G G G RG G G
Sbjct: 388 RGAAGVRGLGGRGYLAYTGLG 408
>gi|34740339 dead end homolog 1 [Homo sapiens]
Length = 353
Score = 134 bits (338), Expect = 1e-31
Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)
Query: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 81
++A ++A + TG L GQRKYGGPPP V G P G+E+F+G++P+D++E +L+
Sbjct: 18 NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
Query: 82 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 141
PLF++ G +++ RLMM +GLNRG+A+ + ++ AQ A+ +NH +R + VC S
Sbjct: 76 PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
Query: 142 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 201
L V +P + T+ +L + GL + L P L++ H+ A
Sbjct: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
Query: 202 AQARRRLMSGKVKVWGNVGTVEWADP 227
A A++ L+ G+ + G VEW P
Sbjct: 193 AMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 103 bits (256), Expect = 4e-22
Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 33/284 (11%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
++VG + D+ ED L F GP+ +R+ D +T + GYA+V F AQ+A+
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 126 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
N +I GK I + S + +F+ ++ KS + + E FS + L+ ++
Sbjct: 72 N-FDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
D + ++G+ F+ +++ A +A M+GK+ V + + +D + E+ +
Sbjct: 131 ----SDDQGSKGYAFVHFQNQSAADRAIEE-MNGKLLKGCKVFVGRFKNR-KDREAELRS 184
Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAV 287
K ++++N + +E L+ FS++GK VK K K + F+ FD + A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244
Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYD 331
KA+EEMNG+D+ G+ I + R ++K +RQA QM++
Sbjct: 245 KAVEEMNGRDINGQLIFV--------GRAQKKVERQAELKQMFE 280
Score = 70.1 bits (170), Expect = 4e-12
Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 55/284 (19%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
+F+ + + + L F G I ++M D ++GYAFV F + AA A++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 126 NNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILE----EFSKV----------TEG 171
N GK + C ++FVG K +E L EF+ V E
Sbjct: 158 N------GKLLKGC------KVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDER 205
Query: 172 LTDVILYH--------QPDDKKKNRGFCFLEYEDHKTAAQARRRL----MSGKV------ 213
L DV + D K++GF F+ ++ H+ A +A + ++G++
Sbjct: 206 LKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Query: 214 --KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK 271
KV + + ++ VK L+++NL +T+ +E L FS FG + RVK
Sbjct: 266 QKKVERQAELKQMFEQLKRERIRGCQGVK-LYIKNLDDTIDDEKLRNEFSSFGSISRVKV 324
Query: 272 L------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 309
+ K + I F + A KAM EMNG+ L + + I A+
Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 93.6 bits (231), Expect = 3e-19
Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
++VG + D+ E L F AGP+ +R+ D +T + GYA+V F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
N ++ GK I + S + L F+ ++ KS + + + FS L+ ++
Sbjct: 73 N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
D+ ++G+ F+ +E + A +A + M+G + V + ++ + E+ A
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
K K ++++N V +E L++ FSQFGK VK ++D + F+ +++ + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 333
KA+EEMNGK++ G+ I + A+ +++ E K + + K + Y
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Score = 80.5 bits (197), Expect = 3e-15
Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 49/310 (15%)
Query: 48 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
G P ++S + PS+ +F+ + + + L F G I +++ D
Sbjct: 79 GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136
Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
++GYAFV F T+EAA +A++ L N+ ++ G+ +G N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195
Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
+ + E + E FS+ + L+ ++ D K++GF F+ YE H+ A +A M
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-M 251
Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL-------------FVRNLANTVTEEIL 256
+GK ++ G + V A + E+ K + L +++NL +T+ +E L
Sbjct: 252 NGK-EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
K FS FG + K + K + F+ F + A KA+ EMNG+ + + + + A
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA-- 368
Query: 311 PDQKRKERKA 320
Q+++ERKA
Sbjct: 369 --QRKEERKA 376
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 93.6 bits (231), Expect = 3e-19
Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
++VG + D+ E L F AGP+ +R+ D +T + GYA+V F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
N ++ GK I + S + L F+ ++ KS + + + FS L+ ++
Sbjct: 73 N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
D+ ++G+ F+ +E + A +A + M+G + V + ++ + E+ A
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
K K ++++N V +E L++ FSQFGK VK ++D + F+ +++ + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 333
KA+EEMNGK++ G+ I + A+ +++ E K + + K + Y
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Score = 80.5 bits (197), Expect = 3e-15
Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 49/310 (15%)
Query: 48 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
G P ++S + PS+ +F+ + + + L F G I +++ D
Sbjct: 79 GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136
Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
++GYAFV F T+EAA +A++ L N+ ++ G+ +G N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195
Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
+ + E + E FS+ + L+ ++ D K++GF F+ YE H+ A +A M
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-M 251
Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL-------------FVRNLANTVTEEIL 256
+GK ++ G + V A + E+ K + L +++NL +T+ +E L
Sbjct: 252 NGK-EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
K FS FG + K + K + F+ F + A KA+ EMNG+ + + + + A
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA-- 368
Query: 311 PDQKRKERKA 320
Q+++ERKA
Sbjct: 369 --QRKEERKA 376
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 93.6 bits (231), Expect = 3e-19
Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
++VG + D+ E L F AGP+ +R+ D +T + GYA+V F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
N ++ GK I + S + L F+ ++ KS + + + FS L+ ++
Sbjct: 73 N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
D+ ++G+ F+ +E + A +A + M+G + V + ++ + E+ A
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
K K ++++N V +E L++ FSQFGK VK ++D + F+ +++ + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 333
KA+EEMNGK++ G+ I + A+ +++ E K + + K + Y
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Score = 80.5 bits (197), Expect = 3e-15
Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 49/310 (15%)
Query: 48 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
G P ++S + PS+ +F+ + + + L F G I +++ D
Sbjct: 79 GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136
Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
++GYAFV F T+EAA +A++ L N+ ++ G+ +G N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195
Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
+ + E + E FS+ + L+ ++ D K++GF F+ YE H+ A +A M
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-M 251
Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL-------------FVRNLANTVTEEIL 256
+GK ++ G + V A + E+ K + L +++NL +T+ +E L
Sbjct: 252 NGK-EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
K FS FG + K + K + F+ F + A KA+ EMNG+ + + + + A
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA-- 368
Query: 311 PDQKRKERKA 320
Q+++ERKA
Sbjct: 369 --QRKEERKA 376
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 89.0 bits (219), Expect = 8e-18
Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 30/292 (10%)
Query: 60 PSVGT-EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAA 118
PS T ++VG + D+ E L F AGPI +R+ D +T + YA+V F + A
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDA 65
Query: 119 QEAVKLYNNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTE 170
+ A+ N ++ GK + + S + +FV ++ KS + + + S
Sbjct: 66 EHALDTMN-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS---- 120
Query: 171 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
+++ + D+ ++G+ F+ +E H+ A +A ++ M+G + V ++ ++
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKK-MNGMLLNGRKVFVGQFKSR-KE 178
Query: 231 PDPEVMAKVKV---LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHF 280
+ E+ A+ K ++++N + +E L+ F +FG VK K K + F+ F
Sbjct: 179 REAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 238
Query: 281 DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 332
+ + A KA++EMNGK+L G+ I + A QK+ ER+ + + QM D
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRA----QKKVERQTELKRTFEQMKQD 286
Score = 72.8 bits (177), Expect = 6e-13
Identities = 86/326 (26%), Positives = 132/326 (40%), Gaps = 65/326 (19%)
Query: 48 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
G P ++S + PS+ IFV + + + L G I ++ D
Sbjct: 79 GKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NG 136
Query: 104 NRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIL- 162
++GY FV F T EAA+ A+K N + K +FVG K +E L
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRK------------VFVGQFKSRKEREAELG 184
Query: 163 ---EEFSKV----------TEGLTDVILYHQP--------DDKKKNRGFCFLEYEDHKTA 201
+EF V E L D+ P D+ K++GF F+ +E H+ A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 202 AQARRRL----MSGKVKVWGNVGT-----VEWADPIEDPDPEVMAKVKV--LFVRNLANT 250
+A + ++GK G E E + + + +V L+V+NL +
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDG 304
Query: 251 VTEEILEKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 304
+ +E L KAFS FG + K + K + F+ F + A KA+ EMNG+
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR-------- 356
Query: 305 IVFAKPPDQKRKERKAQRQAAKNQMY 330
IV KP +RK +RQA Y
Sbjct: 357 IVATKPLYVALAQRKEERQAYLTNEY 382
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 86.3 bits (212), Expect = 5e-17
Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 29/285 (10%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
++VG + D+ E L F AGPI +R+ D +T + GYA+V F A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
N ++ GK + + S + +F+ ++ KS + + + FS L+ ++
Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
D+ ++G+ F+ +E + A +A + M+G + V + ++ + E+ A
Sbjct: 132 C----DENGSKGYGFVHFETQEAAERAIEK-MNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 238 KVKV---LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAV 287
+ K ++++N + +E L+ F +FG VK K K + F+ F+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 332
KA++EMNGK+L G+ I + A QK+ ER+ + + QM D
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA----QKKVERQTELKRKFEQMKQD 286
Score = 73.6 bits (179), Expect = 4e-13
Identities = 80/320 (25%), Positives = 140/320 (43%), Gaps = 53/320 (16%)
Query: 48 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
G P ++S + PS+ IF+ + + + L F G I +++ D
Sbjct: 79 GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136
Query: 104 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 149
++GY FV F T+EAA+ A++ L N+ ++ G+ +G N +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-VYI 195
Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
+ + E++ + F K L+ ++ D+ K++GF F+ +E H+ A +A M
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVM---TDESGKSKGFGFVSFERHEDAQKAVDE-M 251
Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-------------LFVRNLANTVTEEIL 256
+GK ++ G V A + E+ K + L+V+NL + + +E L
Sbjct: 252 NGK-ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 257 EKAFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
K FS FG + K + K + F+ F + A KA+ EMNG+ IV KP
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR--------IVATKP 362
Query: 311 PDQKRKERKAQRQAAKNQMY 330
+RK +RQA Y
Sbjct: 363 LYVALAQRKEERQAHLTNQY 382
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 85.5 bits (210), Expect = 9e-17
Identities = 77/285 (27%), Positives = 133/285 (46%), Gaps = 29/285 (10%)
Query: 66 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 125
++VG + D+ E L F AGPI +R+ D T + GYA++ F A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 126 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
N E+ G+ I + S + +F+ ++ S + + + FS +++
Sbjct: 73 -NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST----FGNILS 127
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQA---RRRLMSGKVKVWGNVGTVEWADPIEDPDPE 234
D+ +RGF F+ +E H+ A QA ++ KV+ VG + E
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF--VGHFKSRREREAELGA 185
Query: 235 VMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAV 287
+ ++V+NL V E+ L+ FSQFGK+ VK ++D + F++F++ + A
Sbjct: 186 RALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQ 245
Query: 288 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDD 332
KA+ MNGK++ G + A QKR ER+ + + QM D
Sbjct: 246 KAVVHMNGKEVSGRLLYAGRA----QKRVERQNELKRRFEQMKQD 286
Score = 60.8 bits (146), Expect = 2e-09
Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 49/310 (15%)
Query: 48 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 103
G P ++S + P + IF+ + + L F G I ++ D
Sbjct: 79 GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-- 136
Query: 104 NRGYAFVTFCTKEAAQEAVKLYNNHEIRSGK--------------HIGVCISVANNRLFV 149
+RG+ FV F T EAAQ+A+ N + K +G N ++V
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN-IYV 195
Query: 150 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLM 209
++P ++ + + FS+ + L+ ++ D+ +R F F+ +E H+ A +A M
Sbjct: 196 KNLPVDVDEQGLQDLFSQFGKMLSVKVMR---DNSGHSRCFGFVNFEKHEEAQKAVVH-M 251
Query: 210 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-------------LFVRNLANTVTEEIL 256
+GK +V G + A + E+ + + L+V+NL +++ ++ L
Sbjct: 252 NGK-EVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 257 EKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 310
K FS +G + K + K + F+ F + A KA+ EMNG+ + + + + A
Sbjct: 311 RKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-- 368
Query: 311 PDQKRKERKA 320
Q+++ERKA
Sbjct: 369 --QRKEERKA 376
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 82.4 bits (202), Expect = 8e-16
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 47 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 106
G PP G + ++FVG+IPR L E +L PLFE+ G I++L ++ DP TG+++G
Sbjct: 28 GPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKG 87
Query: 107 YAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANN--------RLFVGSIPKSKTK 158
AF+T+C +++A +A + + G + + A++ +LFVG + K +++
Sbjct: 88 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSE 147
Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSG 211
E +L F + + + PD K G F+++ H T AQA + G
Sbjct: 148 EDVLRLFQPFGV-IDECTVLRGPDGSSK--GCAFVKFSSH-TEAQAAIHALHG 196
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 49 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 108
PPP ++ G +F+ +P++ + EL +F G I ++ MD T ++ +
Sbjct: 385 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 444
Query: 109 FVTFCTKEAAQEAVKLYNNHEI 130
FV+F +AQ A++ N +I
Sbjct: 445 FVSFDNPASAQAAIQAMNGFQI 466
Score = 33.5 bits (75), Expect = 0.42
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 200 TAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKA 259
T ++ARR+ VG+ P PD LFV + + E+ L+
Sbjct: 5 TESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPL 64
Query: 260 FSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 311
F QFG++ + LKD AF+ + RD A+KA ++ + + KP
Sbjct: 65 FEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPA 124
Query: 312 DQKRK 316
D + +
Sbjct: 125 DSESR 129
Score = 30.4 bits (67), Expect = 3.6
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 242 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 293
LF+ +L + L + F FG + K D + F+ FD A A++ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 294 NGKDLEGENIEIVFAKPPD 312
NG + + +++ +P D
Sbjct: 462 NGFQIGMKRLKVQLKRPKD 480
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 77.8 bits (190), Expect = 2e-14
Identities = 85/310 (27%), Positives = 127/310 (40%), Gaps = 26/310 (8%)
Query: 146 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 205
+LF+G + T E + F + LTD ++ P+ K+ +RGF F+ Y T +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYA---TVEEVD 69
Query: 206 RRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
+ + KV G V + A ED P VK +FV + E L F Q+G
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 265 KLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 316
K+E ++ K + +AF+ FD+ D K + + ++G N E+ A P +
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMAS 188
Query: 317 ERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYP---PDYYGYEDYYDYYG 373
+QR + + G RG GRGG+G Y G D Y+ +G
Sbjct: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFG 248
Query: 374 YDYHNYRGG--YED-PYYGYEDFQVGARGRGGRGARGAAPSRGRGA--APPRGRAGY--- 425
D N+ GG Y D Y + G G G R + P G G A P+ + GY
Sbjct: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308
Query: 426 SQRGGPGSAR 435
S GS R
Sbjct: 309 SSSSSYGSGR 318
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 56 SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 115
S ++P ++F+G + + ++ L FE+ G + D +M DP T +RG+ FVT+ T
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 116 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 158
E A+ H++ R G H+ V ++FVG I K T+
Sbjct: 66 EEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117
Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 198
E L ++ + G +VI K RGF F+ ++DH
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
Score = 43.1 bits (100), Expect = 5e-04
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 25 KIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLF 84
++ A + T + +D + K DS G +V +IFVG I D E L F
Sbjct: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYF 125
Query: 85 EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 122
E+ G I + +M D +G RG+AFVTF ++ + V
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 39.3 bits (90), Expect = 0.008
Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 27/244 (11%)
Query: 233 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHF---D 281
P+ +++ LF+ L+ T+E L F Q+G L K+ + + F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 282 ERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERK-----AQRQAAKNQMYDDYY 334
E D A+ +++G+ +E + + ++ P +K + ++ + D +
Sbjct: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDPYY 388
YG + RG G + G+ + + D D Y+ HN P
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
Query: 389 GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQQQ 447
RGR G G G G G GR G +S RGG G + G G G
Sbjct: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGY 244
Query: 448 RGRG 451
G G
Sbjct: 245 NGFG 248
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 77.8 bits (190), Expect = 2e-14
Identities = 85/310 (27%), Positives = 127/310 (40%), Gaps = 26/310 (8%)
Query: 146 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 205
+LF+G + T E + F + LTD ++ P+ K+ +RGF F+ Y T +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYA---TVEEVD 69
Query: 206 RRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
+ + KV G V + A ED P VK +FV + E L F Q+G
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 265 KLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 316
K+E ++ K + +AF+ FD+ D K + + ++G N E+ A P +
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQEMAS 188
Query: 317 ERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYP---PDYYGYEDYYDYYG 373
+QR + + G RG GRGG+G Y G D Y+ +G
Sbjct: 189 ASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFG 248
Query: 374 YDYHNYRGG--YED-PYYGYEDFQVGARGRGGRGARGAAPSRGRGA--APPRGRAGY--- 425
D N+ GG Y D Y + G G G R + P G G A P+ + GY
Sbjct: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308
Query: 426 SQRGGPGSAR 435
S GS R
Sbjct: 309 SSSSSYGSGR 318
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 56 SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 115
S ++P ++F+G + + ++ L FE+ G + D +M DP T +RG+ FVT+ T
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 116 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 158
E A+ H++ R G H+ V ++FVG I K T+
Sbjct: 66 EEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117
Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 198
E L ++ + G +VI K RGF F+ ++DH
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
Score = 43.1 bits (100), Expect = 5e-04
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 25 KIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLF 84
++ A + T + +D + K DS G +V +IFVG I D E L F
Sbjct: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTV-KKIFVGGIKEDTEEHHLRDYF 125
Query: 85 EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 122
E+ G I + +M D +G RG+AFVTF ++ + V
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 39.3 bits (90), Expect = 0.008
Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 27/244 (11%)
Query: 233 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHF---D 281
P+ +++ LF+ L+ T+E L F Q+G L K+ + + F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 282 ERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERK-----AQRQAAKNQMYDDYY 334
E D A+ +++G+ +E + + ++ P +K + ++ + D +
Sbjct: 67 EVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDPYY 388
YG + RG G + G+ + + D D Y+ HN P
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ 184
Query: 389 GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQQQ 447
RGR G G G G G GR G +S RGG G + G G G
Sbjct: 185 EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGY 244
Query: 448 RGRG 451
G G
Sbjct: 245 NGFG 248
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 77.4 bits (189), Expect = 3e-14
Identities = 84/313 (26%), Positives = 127/313 (40%), Gaps = 26/313 (8%)
Query: 146 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 205
+LF+G + T E + F + LTD ++ P+ K+ +RGF F+ Y T +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYA---TVEEVD 69
Query: 206 RRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
+ + KV G V + A ED P VK +FV + E L F Q+G
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 265 KLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 316
K+E ++ K + +AF+ FD+ D K + + + G N E+ A +
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188
Query: 317 ERKAQRQAAKNQMYDDYY---YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYG 373
+QR + + + + G + GRGG GG Y G D Y+ +G
Sbjct: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFG 248
Query: 374 YDYHNYRGG--YED-PYYGYEDFQVGARGRGGRGARGAAPSRGRGA--APPRGRAGYSQR 428
D N+ GG Y D Y + G G G R + P G G A PR + GY
Sbjct: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY--- 305
Query: 429 GGPGSARGVRGAR 441
GG S+ R
Sbjct: 306 GGSSSSSSYGSGR 318
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 56 SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 115
S ++P ++F+G + + ++ L FE+ G + D +M DP T +RG+ FVT+ T
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 116 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 158
E A+ H++ R G H+ V ++FVG I K T+
Sbjct: 66 EEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117
Query: 159 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH 198
E L ++ + G +VI K RGF F+ ++DH
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
Score = 42.4 bits (98), Expect = 0.001
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 27/244 (11%)
Query: 233 PEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL--------ERVKKLKDYAFIHF---D 281
P+ +++ LF+ L+ T+E L F Q+G L K+ + + F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 282 ERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERK-----AQRQAAKNQMYDDYY 334
E D A+ A +++G+ +E + + ++ P +K + ++ + D +
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 335 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDPYY 388
YG + RG G + G+ + + D D Y+ + HN
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
Query: 389 GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQQQ 447
RGR G G G G G GR G +S RGG G +RG G G
Sbjct: 185 EMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 448 RGRG 451
G G
Sbjct: 245 NGFG 248
Score = 40.8 bits (94), Expect = 0.003
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 122
+IFVG I D E L FE+ G I + +M D +G RG+AFVTF ++ + V
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 77.4 bits (189), Expect = 3e-14
Identities = 43/147 (29%), Positives = 82/147 (55%), Gaps = 10/147 (6%)
Query: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
++F+G+IPR+L E +L PLFE+ G I++L ++ D TG+++G AF+T+C +E+A +A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 125 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
+ + G + + + A++ +LFVG + K ++++ + F + + + +
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLF-EAFGNIEECTI 173
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQA 204
PD K G F++Y H A A
Sbjct: 174 LRGPDGNSK--GCAFVKYSSHAEAQAA 198
Score = 44.7 bits (104), Expect = 2e-04
Identities = 76/330 (23%), Positives = 128/330 (38%), Gaps = 52/330 (15%)
Query: 146 RLFVGSIPKS---KTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 202
+LF+G IP++ K + + EEF K+ E + + ++G FL Y + ++A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYE-----LTVLKDRFTGMHKGCAFLTYCERESAL 109
Query: 203 QARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQ 262
+A+ L K N ++ D E + + LFV L +E+ + + F
Sbjct: 110 KAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEA 164
Query: 263 FGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNG-KDLEGENIEIVFA-KPPDQ 313
FG +E L K AF+ + A A+ ++G + + G + +V D+
Sbjct: 165 FGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 224
Query: 314 KRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYG 373
+R R+ Q+ A + M++ P +P G YG Y
Sbjct: 225 ERTMRRMQQMAGQMGMFN------PMAIP----------FGAYG----AYAQALMQQQAA 264
Query: 374 YDYHNYRGGYEDPYYGY---EDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGG 430
+GGY +P + + Q+ A G A P+ G G+ PP G +
Sbjct: 265 LMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSG-GSTPP----GITAPAV 319
Query: 431 PG--SARGVRGARGGAQQQRGRGQGKGVEA 458
P S GV G G Q G+ + V A
Sbjct: 320 PSIPSPIGVNGFTGLPPQANGQPAAEAVFA 349
Score = 36.6 bits (83), Expect = 0.050
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 209 MSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLER 268
M+G GN T+ P++D D +K LF+ + + E+ L+ F +FGK+
Sbjct: 33 MNGLSHSPGNPSTI----PMKDHDA-----IK-LFIGQIPRNLDEKDLKPLFEEFGKIYE 82
Query: 269 VKKLKD--------YAFIHFDERDGAVKAMEEMN-GKDLEGENIEIVFAKPPDQKRK 316
+ LKD AF+ + ER+ A+KA ++ K L G N I KP D + +
Sbjct: 83 LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ-VKPADSESR 138
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 76.6 bits (187), Expect = 4e-14
Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
++FVG+IPR L E +L P+FE+ G I++L ++ D TGL++G AF+T+C +++A +A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 125 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177
+ + G + + + A++ +LFVG + K +T E + + F + + +
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126
Query: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 212
PD K G F++++ H A A L S +
Sbjct: 127 LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSR 159
Score = 40.0 bits (92), Expect = 0.004
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 146 RLFVGSIPK---SKTKEQILEEFSKVTEGLTDVILYHQPDDKKK--NRGFCFLEYEDHKT 200
+LFVG IP+ K + I E+F ++ E LT + DK ++G FL Y +
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFE-LTVI------KDKYTGLHKGCAFLTYCARDS 60
Query: 201 AAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 260
A +A+ L K N ++ D E + + LFV L T+E + K F
Sbjct: 61 ALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMF 115
Query: 261 SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPD 312
FG ++ L K AF+ F A A+ + + + L G + +V
Sbjct: 116 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 175
Query: 313 QKRKERKAQRQAA 325
+K + + +Q A
Sbjct: 176 EKERGLRRMQQVA 188
Score = 32.3 bits (72), Expect = 0.94
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 242 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 293
+F+ +L T+ + + F FG + K D + F+ FD A A++ M
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 294 NGKDLEGENIEIVFAKPPDQKR 315
NG + + +++ +P D R
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANR 463
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,721,090
Number of Sequences: 37866
Number of extensions: 1226910
Number of successful extensions: 9676
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 387
Number of HSP's that attempted gapping in prelim test: 5296
Number of HSP's gapped (non-prelim): 3247
length of query: 464
length of database: 18,247,518
effective HSP length: 106
effective length of query: 358
effective length of database: 14,233,722
effective search space: 5095672476
effective search space used: 5095672476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.