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Search of human proteins with 22749145
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22749145 ring finger protein 217 [Homo sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22749145 ring finger protein 217 [Homo sapiens] 593 e-170
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 74 2e-13
gi|5453557 ariadne homolog 2 [Homo sapiens] 69 3e-12
gi|38045938 ring finger protein 144 [Homo sapiens] 69 6e-12
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 67 2e-11
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 67 2e-11
gi|50284696 IBR domain containing 2 [Homo sapiens] 67 2e-11
gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo sa... 65 6e-11
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 58 8e-09
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 58 8e-09
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 55 7e-08
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 55 9e-08
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 55 9e-08
gi|169790973 parkin isoform 3 [Homo sapiens] 52 7e-07
gi|169790971 parkin isoform 2 [Homo sapiens] 52 7e-07
gi|169790969 parkin isoform 1 [Homo sapiens] 52 7e-07
gi|109150431 ring finger protein 31 [Homo sapiens] 52 7e-07
gi|35493801 ring finger protein 19 [Homo sapiens] 50 2e-06
gi|35493782 ring finger protein 19 [Homo sapiens] 50 2e-06
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 49 5e-06
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 49 5e-06
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 49 5e-06
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 49 5e-06
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 49 5e-06
gi|40807457 zinc finger protein 334 isoform a [Homo sapiens] 42 6e-04
gi|40807459 zinc finger protein 334 isoform b [Homo sapiens] 42 6e-04
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens] 38 0.011
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens] 38 0.011
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens] 38 0.011
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens] 38 0.011
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 593 bits (1528), Expect = e-170
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF 60
MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF
Sbjct: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF 60
Query: 61 TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE 120
TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE
Sbjct: 61 TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE 120
Query: 121 IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF 180
IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF
Sbjct: 121 IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF 180
Query: 181 GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR 240
GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR
Sbjct: 181 GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR 240
Query: 241 TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL 275
TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL
Sbjct: 241 TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL 275
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 73.6 bits (179), Expect = 2e-13
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKY-------FLELGRIDSSTKP 53
M+ +GQ I CP C +++ TV+ +T + +K KY F+E R+ P
Sbjct: 221 MEEGMGQT-ISCPAHGCDILVDDNTVMRLIT-DSKVKLKYQHLITNSFVECNRL-LKWCP 277
Query: 54 CPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKL 113
P C H + P ++C C +CF C WH+ V CK KK K
Sbjct: 278 APDCHHVVKVQYPDAKP----------VRCK-CGRQFCFNCGENWHDPVKCKWLKKWIKK 326
Query: 114 LRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTC--SQCNTNFCYRC 160
+ N ++CPKC + I++ GC+HM C C FC+ C
Sbjct: 327 CDDDSETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVC 375
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 69.3 bits (168), Expect = 3e-12
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 80 KIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQ 139
++QC C V+CFKC +H +C +K + + + + CPKC I I+
Sbjct: 246 RVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKCNICIE 305
Query: 140 RTEGCDHMTCSQCNTNFCYRC 160
+ GC+HM CS+C +FC+ C
Sbjct: 306 KNGGCNHMQCSKCKHDFCWMC 326
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 47 IDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPW----HEGV 102
I + TK CP+C +K G +QC C+ +C+ C W E
Sbjct: 290 ISAHTKDCPKCN--ICIEKNGGCN---------HMQCSKCKHDFCWMCLGDWKTHGSEYY 338
Query: 103 NCKEYKKGDKLL 114
C YK+ ++
Sbjct: 339 ECSRYKENPDIV 350
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 68.6 bits (166), Expect = 6e-12
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 81 IQCPTCQFVWCFKCHSPWHEGVNCKE-----YKKGDKLLRHWASEIEHGQRNAQKCPKCK 135
+QC C+ +C C + WH G C E + G+ A ++E ++CPKCK
Sbjct: 133 VQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGETSA---AFKMEEDDAPIKRCPKCK 189
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRCGE 162
++I+R EGC M C C FC+ C E
Sbjct: 190 VYIERDEGCAQMMCKNCKHAFCWYCLE 216
Score = 30.0 bits (66), Expect = 2.3
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 23 ETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQ 82
ET + L E S +K + D+ K CP+CK + R E ++
Sbjct: 158 ETMPITFLPGETSAAFK----MEEDDAPIKRCPKCKVYI-----------ERDEGCAQMM 202
Query: 83 CPTCQFVWCFKCHSPWHEGVNCKEYKKG---DKLLRHWASEIEH 123
C C+ +C+ C + Y KG +KL AS I H
Sbjct: 203 CKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLGHSRASVIWH 246
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 67.0 bits (162), Expect = 2e-11
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 7 QVEIKCPITE----CFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPC-------P 55
+ E+ CP + C L E + LT ED Y+ FL+LG + + P
Sbjct: 276 EAEVSCPFIDNTYSCSGKLLEREIKALLTPED---YQRFLDLGISIAENRSAFSYHCKTP 332
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKK------ 109
CK + F+ + + CP C V C C + HE +NCKEY++
Sbjct: 333 DCKGWCFFE-----------DDVNEFTCPVCFHVNCLLCKAI-HEQMNCKEYQEDLALRA 380
Query: 110 -GDKLLRHWAS--EIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCY 158
D R ++ Q A +CP+C+I +Q+ +GCD + C+ C+T C+
Sbjct: 381 QNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICW 432
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 67.0 bits (162), Expect = 2e-11
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 7 QVEIKCPITE----CFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPC-------P 55
+ E+ CP + C L E + LT ED Y+ FL+LG + + P
Sbjct: 318 EAEVSCPFIDNTYSCSGKLLEREIKALLTPED---YQRFLDLGISIAENRSAFSYHCKTP 374
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKK------ 109
CK + F+ + + CP C V C C + HE +NCKEY++
Sbjct: 375 DCKGWCFFE-----------DDVNEFTCPVCFHVNCLLCKAI-HEQMNCKEYQEDLALRA 422
Query: 110 -GDKLLRHWAS--EIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCY 158
D R ++ Q A +CP+C+I +Q+ +GCD + C+ C+T C+
Sbjct: 423 QNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICW 474
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 66.6 bits (161), Expect = 2e-11
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 81 IQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQR 140
++CP+C +C C WH V+C++ + H A + ++CP C+++I+R
Sbjct: 143 VECPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHRALFGTDAEAPIKQCPVCRVYIER 202
Query: 141 TEGCDHMTCSQCNTNFCYRC 160
EGC M C C FC+ C
Sbjct: 203 NEGCAQMMCKNCKHTFCWYC 222
>gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo
sapiens]
Length = 1089
Score = 65.1 bits (157), Expect = 6e-11
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 1 MKVQLGQVE-IKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTK----PCP 55
+K+Q G+ I CP +CF+ + + ++ E +Y F ++++ P P
Sbjct: 366 LKIQEGEAHNIFCPAYDCFQLVPVDIIESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTP 425
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQ----FVWCFKCHSPWHEGVNCKEYKKGD 111
C K+G + S + S ++ P ++C++C HE +C+ +K
Sbjct: 426 GCDRAVRLTKQGSNTSGSDTLSFPLLRAPAVDCGKGHLFCWECLGEAHEPCDCQTWKNWL 485
Query: 112 KLLRHWASEIEHGQR--------------NAQKCPKCKIHIQRTEGCDHMTCSQCNTNFC 157
+ + E G N++ C CK IQ+ EGC+HM C++C +FC
Sbjct: 486 QKITEMKPEELVGVSEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFC 545
Query: 158 YRCGERYRQ 166
+ C E +++
Sbjct: 546 WICLEEWKK 554
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 58.2 bits (139), Expect = 8e-09
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 2 KVQLGQVEIKC----PITECFEFLEETTVV--YNLTHEDSIKYKYFLELGRIDSSTKPCP 55
K++L +E C P +E + L +T + Y E+ + Y EL R CP
Sbjct: 554 KLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELVR-------CP 606
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPW--HEGVNCKEYKKGD 111
C P S+ K + CP C+ C KC W H G+ C+E + D
Sbjct: 607 SCS----------FPALLDSDVK-RFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKD 655
Query: 112 KLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
+ + E + +KC KC + ++EGC+ M+C +C CY C
Sbjct: 656 DIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSC-RCGAQMCYLC 703
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 58.2 bits (139), Expect = 8e-09
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 2 KVQLGQVEIKC----PITECFEFLEETTVV--YNLTHEDSIKYKYFLELGRIDSSTKPCP 55
K++L +E C P +E + L +T + Y E+ + Y EL R CP
Sbjct: 611 KLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELVR-------CP 663
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPW--HEGVNCKEYKKGD 111
C P S+ K + CP C+ C KC W H G+ C+E + D
Sbjct: 664 SCS----------FPALLDSDVK-RFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKD 712
Query: 112 KLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
+ + E + +KC KC + ++EGC+ M+C +C CY C
Sbjct: 713 DIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSC-RCGAQMCYLC 760
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 55.1 bits (131), Expect = 7e-08
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSI-KYKYFLELGRIDSSTKPCPQCKH 59
+++ +V I CP EC E L + L + KY+ F+ L R +S C C
Sbjct: 152 LEISESRVPISCP--ECSERLNPHDIRLLLADPPLMHKYEEFM-LRRYLASDPDCRWCPA 208
Query: 60 FTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPWHEGVNC----KEYKKGDKL 113
G+ S K+ C CQ +C+ C WH C ++ + ++
Sbjct: 209 ----PDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRV 264
Query: 114 LRHWASEIEHGQRNA----QKCPKCKIHIQRTE--GCDHMTCSQCNTNFCYRCGERYRQL 167
S + +GQ + + CP+C +I + C+HMTC+ C FC+ C + L
Sbjct: 265 RTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDL 324
Query: 168 RFFGDHTSNLSIFGCKY 184
+ LS GC +
Sbjct: 325 HY-------LSPSGCTF 334
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 54.7 bits (130), Expect = 9e-08
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 83 CPTCQFVWCFKCHSPW-HEGVNCKEYKKG-DKLLRHWASEIEHGQRN-----AQKCPKCK 135
C C + CF C P H +C + D + +E ++ +++CP C+
Sbjct: 2181 CSKCGWASCFNCSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQ 2240
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRC 160
I++ EGC HMTC++CN FC+RC
Sbjct: 2241 APIEKNEGCLHMTCAKCNHGFCWRC 2265
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 54.7 bits (130), Expect = 9e-08
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 28/198 (14%)
Query: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSI-KYKYFLELGRIDSSTKPCPQCKH 59
+++ +V I CP EC E L + L + KY+ F+ L R +S C C
Sbjct: 152 LEISESRVPISCP--ECSERLNPHDIRLLLADPPLMHKYEEFM-LRRYLASDPDCRWCPA 208
Query: 60 FTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPWHEGVNC----KEYKKGDKL 113
G+ S K+ C CQ +C+ C WH C ++ + ++
Sbjct: 209 ----PDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRV 264
Query: 114 LRHWASEIEHGQRNA-----QKCPKCKIHIQRTE--GCDHMTCSQCNTNFCYRCGERYRQ 166
S + +GQ + + CP+C +I + C+HMTC+ C FC+ C +
Sbjct: 265 RTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD 324
Query: 167 LRFFGDHTSNLSIFGCKY 184
L + LS GC +
Sbjct: 325 LHY-------LSPSGCTF 335
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 51.6 bits (122), Expect = 7e-07
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 86 CQFVWCFKCHSPWHEG----------VNCKEYKKGDKLLRH--W-ASEIEHGQRNAQKCP 132
C F +C +C +HEG + Y+ ++ W A+ E ++ + CP
Sbjct: 211 CGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCP 270
Query: 133 KCKIHIQRTEGCDHMTC--SQCNTNFCYRCGERYRQLRFFGDH 173
+C + +++ GC HM C QC +C+ CG + ++ GDH
Sbjct: 271 RCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRV-CMGDH 312
Score = 35.8 bits (81), Expect = 0.042
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 47 IDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKY-KIQCPTCQFVWCFKCHSPWH 99
I +TKPCP+C H+P + K P C+ WC+ C W+
Sbjct: 262 IKKTTKPCPRC----------HVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWN 305
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 51.6 bits (122), Expect = 7e-07
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 86 CQFVWCFKCHSPWHEG----------VNCKEYKKGDKLLRH--W-ASEIEHGQRNAQKCP 132
C F +C +C +HEG + Y+ ++ W A+ E ++ + CP
Sbjct: 332 CGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCP 391
Query: 133 KCKIHIQRTEGCDHMTC--SQCNTNFCYRCGERYRQLRFFGDH 173
+C + +++ GC HM C QC +C+ CG + ++ GDH
Sbjct: 392 RCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRV-CMGDH 433
Score = 35.8 bits (81), Expect = 0.042
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 47 IDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKY-KIQCPTCQFVWCFKCHSPWH 99
I +TKPCP+C H+P + K P C+ WC+ C W+
Sbjct: 383 IKKTTKPCPRC----------HVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWN 426
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 51.6 bits (122), Expect = 7e-07
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 86 CQFVWCFKCHSPWHEG----------VNCKEYKKGDKLLRH--W-ASEIEHGQRNAQKCP 132
C F +C +C +HEG + Y+ ++ W A+ E ++ + CP
Sbjct: 360 CGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCP 419
Query: 133 KCKIHIQRTEGCDHMTC--SQCNTNFCYRCGERYRQLRFFGDH 173
+C + +++ GC HM C QC +C+ CG + ++ GDH
Sbjct: 420 RCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRV-CMGDH 461
Score = 35.8 bits (81), Expect = 0.042
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 47 IDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKY-KIQCPTCQFVWCFKCHSPWH 99
I +TKPCP+C H+P + K P C+ WC+ C W+
Sbjct: 411 IKKTTKPCPRC----------HVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWN 454
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 51.6 bits (122), Expect = 7e-07
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 83 CPTCQFVWCFKCHSPW---HEGVNCKEYKKGDKLL--RHWASEIE-HGQRNAQKCPKCKI 136
CP C +C +C W H G +C++++ ++ + A + + Q N CPKCK
Sbjct: 817 CPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNDPEYQAQGLAMYLQENGIDCPKCKF 876
Query: 137 HIQRTEG-CDHMTCSQCNTNFCYRC 160
G C H C+QC FC C
Sbjct: 877 SYALARGGCMHFHCTQCRHQFCSGC 901
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 50.4 bits (119), Expect = 2e-06
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 37/203 (18%)
Query: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSI-KYKYFLE----LGRIDSSTKPCP 55
+++ +V I CP EC E + L+ + + KY+ F+ + D P P
Sbjct: 165 IEISESRVNISCP--ECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAP 222
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPWHEGVNC----KEYKK 109
C G+ S K+ C C +C+ C WH C +E +
Sbjct: 223 DC---------GYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERAQ 273
Query: 110 GDKLLRHWASEIEHGQRNA------QKCPKCKIHIQRTE--GCDHMTCSQCNTNFCYRCG 161
+L +S I + Q + + CP+C +I + C+HMTC+ C FC+ C
Sbjct: 274 SLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCM 333
Query: 162 ERYRQLRFFGDHTSNLSIFGCKY 184
+ L + LS GC +
Sbjct: 334 KEISDLHY-------LSPSGCTF 349
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 50.4 bits (119), Expect = 2e-06
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 37/203 (18%)
Query: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSI-KYKYFLE----LGRIDSSTKPCP 55
+++ +V I CP EC E + L+ + + KY+ F+ + D P P
Sbjct: 165 IEISESRVNISCP--ECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAP 222
Query: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPWHEGVNC----KEYKK 109
C G+ S K+ C C +C+ C WH C +E +
Sbjct: 223 DC---------GYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERAQ 273
Query: 110 GDKLLRHWASEIEHGQRNA------QKCPKCKIHIQRTE--GCDHMTCSQCNTNFCYRCG 161
+L +S I + Q + + CP+C +I + C+HMTC+ C FC+ C
Sbjct: 274 SLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCM 333
Query: 162 ERYRQLRFFGDHTSNLSIFGCKY 184
+ L + LS GC +
Sbjct: 334 KEISDLHY-------LSPSGCTF 349
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 83 CPTCQFVWCFKCHSPWHEGVNCK------------------------EYKKGDKLLRHWA 118
C +C F +C C +H CK + + G ++++
Sbjct: 329 CSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKAL 388
Query: 119 SEIEHGQ---RNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
E+E + +N++ CP C I++ +GC+ MTC+ C FC+ C
Sbjct: 389 EEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWIC 433
Score = 35.4 bits (80), Expect = 0.054
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 80 KIQCPTCQFVWCFKCHSPWH--EGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPK--CK 135
++QC C C +P E V + + + D+LL + ++ + CP+ C+
Sbjct: 259 QVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDL---MADVVYCPRPCCQ 315
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRCGERY 164
+ + + GC CS CN FC C Y
Sbjct: 316 LPVMQEPGCTMGICSSCNFAFCTLCRLTY 344
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 83 CPTCQFVWCFKCHSPWHEGVNCK------------------------EYKKGDKLLRHWA 118
C +C F +C C +H CK + + G ++++
Sbjct: 329 CSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKAL 388
Query: 119 SEIEHGQ---RNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
E+E + +N++ CP C I++ +GC+ MTC+ C FC+ C
Sbjct: 389 EEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWIC 433
Score = 35.4 bits (80), Expect = 0.054
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 80 KIQCPTCQFVWCFKCHSPWH--EGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPK--CK 135
++QC C C +P E V + + + D+LL + ++ + CP+ C+
Sbjct: 259 QVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDL---MADVVYCPRPCCQ 315
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRCGERY 164
+ + + GC CS CN FC C Y
Sbjct: 316 LPVMQEPGCTMGICSSCNFAFCTLCRLTY 344
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 83 CPTCQFVWCFKCHSPWHEGVNCK------------------------EYKKGDKLLRHWA 118
C +C F +C C +H CK + + G ++++
Sbjct: 329 CSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKAL 388
Query: 119 SEIEHGQ---RNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
E+E + +N++ CP C I++ +GC+ MTC+ C FC+ C
Sbjct: 389 EEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWIC 433
Score = 35.4 bits (80), Expect = 0.054
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 80 KIQCPTCQFVWCFKCHSPWH--EGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPK--CK 135
++QC C C +P E V + + + D+LL + ++ + CP+ C+
Sbjct: 259 QVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDL---MADVVYCPRPCCQ 315
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRCGERY 164
+ + + GC CS CN FC C Y
Sbjct: 316 LPVMQEPGCTMGICSSCNFAFCTLCRLTY 344
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 83 CPTCQFVWCFKCHSPWHEGVNCK------------------------EYKKGDKLLRHWA 118
C +C F +C C +H CK + + G ++++
Sbjct: 203 CSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKAL 262
Query: 119 SEIEHGQ---RNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
E+E + +N++ CP C I++ +GC+ MTC+ C FC+ C
Sbjct: 263 EEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWIC 307
Score = 35.4 bits (80), Expect = 0.054
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 80 KIQCPTCQFVWCFKCHSPWH--EGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPK--CK 135
++QC C C +P E V + + + D+LL + ++ + CP+ C+
Sbjct: 133 QVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDL---MADVVYCPRPCCQ 189
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRCGERY 164
+ + + GC CS CN FC C Y
Sbjct: 190 LPVMQEPGCTMGICSSCNFAFCTLCRLTY 218
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 83 CPTCQFVWCFKCHSPWHEGVNCK------------------------EYKKGDKLLRHWA 118
C +C F +C C +H CK + + G ++++
Sbjct: 329 CSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKAL 388
Query: 119 SEIEHGQ---RNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
E+E + +N++ CP C I++ +GC+ MTC+ C FC+ C
Sbjct: 389 EEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWIC 433
Score = 35.4 bits (80), Expect = 0.054
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 80 KIQCPTCQFVWCFKCHSPWH--EGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPK--CK 135
++QC C C +P E V + + + D+LL + ++ + CP+ C+
Sbjct: 259 QVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDL---MADVVYCPRPCCQ 315
Query: 136 IHIQRTEGCDHMTCSQCNTNFCYRCGERY 164
+ + + GC CS CN FC C Y
Sbjct: 316 LPVMQEPGCTMGICSSCNFAFCTLCRLTY 344
>gi|40807457 zinc finger protein 334 isoform a [Homo sapiens]
Length = 680
Score = 42.0 bits (97), Expect = 6e-04
Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 36/201 (17%)
Query: 6 GQVEIKCPITECFEFL--EETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHFTT- 62
G+ +C EC +F + T ++ TH K+ F + GRI C QCK T
Sbjct: 457 GKKSYEC--NECGKFFCHKSTLTIHQRTHTGE-KHGVFNKCGRISIVKSNCSQCKRMNTK 513
Query: 63 ------------FKKKGHIPTPSRSESKYKIQCPTCQFVWCFKC----HSPWHEGVNCKE 106
K H+ R+ + +C C +C K H H G E
Sbjct: 514 ENLYECSEHGHAVSKNSHLIVHQRTIWERPYECNECGRTYCRKSALTHHQRTHTGQRPYE 573
Query: 107 YKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 166
+ K S +EH + + + P C++C +FC++ R +
Sbjct: 574 CNECGKTFCQKFSFVEHQRTHTGEKP--------------YECNECGKSFCHKSAFRVHR 619
Query: 167 LRFFGDHTSNLSIFGCKYRYL 187
G+ + G YR L
Sbjct: 620 RIHTGEKPYECNQCGKTYRRL 640
>gi|40807459 zinc finger protein 334 isoform b [Homo sapiens]
Length = 642
Score = 42.0 bits (97), Expect = 6e-04
Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 36/201 (17%)
Query: 6 GQVEIKCPITECFEFL--EETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHFTT- 62
G+ +C EC +F + T ++ TH K+ F + GRI C QCK T
Sbjct: 419 GKKSYEC--NECGKFFCHKSTLTIHQRTHTGE-KHGVFNKCGRISIVKSNCSQCKRMNTK 475
Query: 63 ------------FKKKGHIPTPSRSESKYKIQCPTCQFVWCFKC----HSPWHEGVNCKE 106
K H+ R+ + +C C +C K H H G E
Sbjct: 476 ENLYECSEHGHAVSKNSHLIVHQRTIWERPYECNECGRTYCRKSALTHHQRTHTGQRPYE 535
Query: 107 YKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 166
+ K S +EH + + + P C++C +FC++ R +
Sbjct: 536 CNECGKTFCQKFSFVEHQRTHTGEKP--------------YECNECGKSFCHKSAFRVHR 581
Query: 167 LRFFGDHTSNLSIFGCKYRYL 187
G+ + G YR L
Sbjct: 582 RIHTGEKPYECNQCGKTYRRL 602
>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
Length = 170
Score = 37.7 bits (86), Expect = 0.011
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 67 GHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQR 126
GHI + + + QC C+ C P H +C D+ + E H Q+
Sbjct: 74 GHIAKDCKEPKREREQC-------CYNCGKPGHLARDCDH---ADEQKCYSCGEFGHIQK 123
Query: 127 NAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGE 162
+ C K K + G + CS+ + CYRCGE
Sbjct: 124 D---CTKVKCYRCGETGHVAINCSKTSEVNCYRCGE 156
>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
Length = 171
Score = 37.7 bits (86), Expect = 0.011
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 67 GHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQR 126
GHI + + + QC C+ C P H +C D+ + E H Q+
Sbjct: 75 GHIAKDCKEPKREREQC-------CYNCGKPGHLARDCDH---ADEQKCYSCGEFGHIQK 124
Query: 127 NAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGE 162
+ C K K + G + CS+ + CYRCGE
Sbjct: 125 D---CTKVKCYRCGETGHVAINCSKTSEVNCYRCGE 157
>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
Length = 172
Score = 37.7 bits (86), Expect = 0.011
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 67 GHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQR 126
GHI + + + QC C+ C P H +C D+ + E H Q+
Sbjct: 76 GHIAKDCKEPKREREQC-------CYNCGKPGHLARDCDH---ADEQKCYSCGEFGHIQK 125
Query: 127 NAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGE 162
+ C K K + G + CS+ + CYRCGE
Sbjct: 126 D---CTKVKCYRCGETGHVAINCSKTSEVNCYRCGE 158
>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
Length = 178
Score = 37.7 bits (86), Expect = 0.011
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 67 GHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQR 126
GHI + + + QC C+ C P H +C D+ + E H Q+
Sbjct: 82 GHIAKDCKEPKREREQC-------CYNCGKPGHLARDCDH---ADEQKCYSCGEFGHIQK 131
Query: 127 NAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGE 162
+ C K K + G + CS+ + CYRCGE
Sbjct: 132 D---CTKVKCYRCGETGHVAINCSKTSEVNCYRCGE 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,520,014
Number of Sequences: 37866
Number of extensions: 546759
Number of successful extensions: 2092
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 1913
Number of HSP's gapped (non-prelim): 210
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.