Guide to the Human Genome
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Search of human proteins with 22748835

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748835 transmembrane protein 178 [Homo sapiens]
         (297 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22748835 transmembrane protein 178 [Homo sapiens]                  615   e-176
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]           130   1e-30
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]           129   2e-30
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]           129   2e-30
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]           129   2e-30
gi|169171548 PREDICTED: hypothetical protein [Homo sapiens]           122   4e-28
gi|169171930 PREDICTED: hypothetical protein [Homo sapiens]           122   4e-28
gi|169170986 PREDICTED: hypothetical protein [Homo sapiens]           122   4e-28
gi|239509056 PREDICTED: hypothetical protein [Homo sapiens]           122   4e-28
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H...    46   5e-05
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is...    42   7e-04
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]       39   0.007
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo...    39   0.007
gi|226437592 transmembrane protein 114 [Homo sapiens]                  39   0.007
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso...    39   0.007
gi|67188443 CD276 antigen isoform a [Homo sapiens]                     37   0.027
gi|13376852 CD276 antigen isoform b [Homo sapiens]                     37   0.027
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is...    37   0.027
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho...    33   0.23 
gi|5174607 NGFI-A binding protein 2 [Homo sapiens]                     33   0.23 
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H...    33   0.23 
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho...    32   0.52 
gi|153792186 claudin 7 [Homo sapiens]                                  31   1.1  
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho...    30   2.6  
gi|157743252 pecanex-like 3 [Homo sapiens]                             30   2.6  
gi|15718767 TRAAK [Homo sapiens]                                       30   3.3  
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        29   4.4  
gi|41352721 solute carrier family 36 member 1 [Homo sapiens]           29   5.7  
gi|120587019 zinc finger protein 318 [Homo sapiens]                    29   5.7  
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     28   7.4  

>gi|22748835 transmembrane protein 178 [Homo sapiens]
          Length = 297

 Score =  615 bits (1586), Expect = e-176
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM 60
           MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM
Sbjct: 1   MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM 60

Query: 61  PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYF 120
           PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYF
Sbjct: 61  PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYF 120

Query: 121 LGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGF 180
           LGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGF
Sbjct: 121 LGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGF 180

Query: 181 LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLP 240
           LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLP
Sbjct: 181 LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLP 240

Query: 241 KLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIAQLKSGRDSTV 297
           KLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIAQLKSGRDSTV
Sbjct: 241 KLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIAQLKSGRDSTV 297


>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score =  130 bits (327), Expect = 1e-30
 Identities = 57/110 (51%), Positives = 77/110 (70%)

Query: 172 HLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAAS 231
           +LRR+TAGF+GMAVA++L G I+  +   W+  L Q+VAGLLFLM G FC ISLCT  A 
Sbjct: 175 YLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAG 234

Query: 232 ISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
           I+++L+R P+ +Y LP D+ HGY WS+FCAW  LG  + +G  C   P +
Sbjct: 235 INFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 284


>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  129 bits (325), Expect = 2e-30
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
           LRR+TAGF+GMAVA++L G I+  +   W+  L Q+VAGLLFLM G FC ISLCT  A I
Sbjct: 68  LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127

Query: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
           +++L+R P+ +Y LP D+ HGY WS+FCAW  LG  + +G  C   P +
Sbjct: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176


>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  129 bits (325), Expect = 2e-30
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
           LRR+TAGF+GMAVA++L G I+  +   W+  L Q+VAGLLFLM G FC ISLCT  A I
Sbjct: 68  LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127

Query: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
           +++L+R P+ +Y LP D+ HGY WS+FCAW  LG  + +G  C   P +
Sbjct: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176


>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  129 bits (325), Expect = 2e-30
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
           LRR+TAGF+GMAVA++L G I+  +   W+  L Q+VAGLLFLM G FC ISLCT  A I
Sbjct: 68  LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127

Query: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
           +++L+R P+ +Y LP D+ HGY WS+FCAW  LG  + +G  C   P +
Sbjct: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176


>gi|169171548 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  122 bits (306), Expect = 4e-28
 Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 6   LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
           L+    L L+LC+LG+L  AI +DHWYETD R+H++ C+  +    DP    N     ++
Sbjct: 6   LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62

Query: 65  LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
           LPLR S    R  L    G+     + R L  +   D EC R   +T  GLWRKC+  G 
Sbjct: 63  LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117

Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
           D +I  LI KG  +RCT IKYH+S     RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165


>gi|169171930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  122 bits (306), Expect = 4e-28
 Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 6   LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
           L+    L L+LC+LG+L  AI +DHWYETD R+H++ C+  +    DP    N     ++
Sbjct: 6   LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62

Query: 65  LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
           LPLR S    R  L    G+     + R L  +   D EC R   +T  GLWRKC+  G 
Sbjct: 63  LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117

Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
           D +I  LI KG  +RCT IKYH+S     RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165


>gi|169170986 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  122 bits (306), Expect = 4e-28
 Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 6   LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
           L+    L L+LC+LG+L  AI +DHWYETD R+H++ C+  +    DP    N     ++
Sbjct: 6   LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62

Query: 65  LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
           LPLR S    R  L    G+     + R L  +   D EC R   +T  GLWRKC+  G 
Sbjct: 63  LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117

Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
           D +I  LI KG  +RCT IKYH+S     RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165


>gi|239509056 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  122 bits (306), Expect = 4e-28
 Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 6   LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
           L+    L L+LC+LG+L  AI +DHWYETD R+H++ C+  +    DP    N     ++
Sbjct: 6   LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62

Query: 65  LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
           LPLR S    R  L    G+     + R L  +   D EC R   +T  GLWRKC+  G 
Sbjct: 63  LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117

Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
           D +I  LI KG  +RCT IKYH+S     RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165


>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
           sapiens]
          Length = 275

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 28/177 (15%)

Query: 109 ATYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEW 168
           A ++GLWR C+F G ++            RC A +Y     I L          + ++  
Sbjct: 53  ALHAGLWRVCFFAGREKG-----------RCVASEYFLEPEINL----------VTENTE 91

Query: 169 HLLHLRRITAGFLGMAVAVLLCGCIVATVSFFW-EESLTQHVAGLLFLMTGIFCTISLCT 227
           ++L   R    F  +++ ++    +++ +     + ++   V+G+ F+++G+   + L  
Sbjct: 92  NILKTVRTATPFPMVSLFLVFTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVL 151

Query: 228 YAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAG-GLCIAYPFISR 283
           Y +SI+ ++   P    S      + Y WS   A+ +  F++  G G+   Y F  R
Sbjct: 152 YISSINDEVMNRPS---SSEQYFHYRYGWSF--AFAASSFLLKEGAGVMSVYLFTKR 203


>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
           isoform a [Homo sapiens]
          Length = 275

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 28/175 (16%)

Query: 111 YSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHL 170
           +SGLWR C+  G +R            RC  I+Y          +P N T+   +   ++
Sbjct: 55  HSGLWRVCFLAGEERG-----------RCFTIEY---------VMPMN-TQLTSESTVNV 93

Query: 171 LHLRRITAGFLGMAVAVLLCGCIVATVSFFW-EESLTQHVAGLLFLMTGIFCTISLCTYA 229
           L + R    F  +++  +  G I+  +       ++   V+G+ F+++G+   + L  Y 
Sbjct: 94  LKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYI 153

Query: 230 ASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGLCIAYPFISR 283
           +SI+ ++    K          + Y WS   A+ ++ F++  + G+   Y F+ R
Sbjct: 154 SSINDEMLNRTK---DAETYFNYKYGWSF--AFAAISFLLTESAGVMSVYLFMKR 203



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 4  RALVTALSLGLSLCSLGLLVTAIFTDHW 31
          R  +T LS   ++C LGLL  A+ TD+W
Sbjct: 6  RKALTLLSSVFAVCGLGLLGIAVSTDYW 33


>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)

Query: 76  RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
           RL   GPG  D         LG ++     P+ +++SGLWR C                +
Sbjct: 39  RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 74

Query: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
              CT +      P RL N+      T+ +    LL +       L +++ +++ G +  
Sbjct: 75  QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 124

Query: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
            +SF  +  L   + G+LFL   +     +  Y A  +        L+   +L   V+  
Sbjct: 125 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 184

Query: 254 YSWSIFCAWCS 264
           + WS+   W S
Sbjct: 185 FGWSLALGWIS 195


>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
           sapiens]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)

Query: 76  RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
           RL   GPG  D         LG ++     P+ +++SGLWR C                +
Sbjct: 33  RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 68

Query: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
              CT +      P RL N+      T+ +    LL +       L +++ +++ G +  
Sbjct: 69  QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 118

Query: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
            +SF  +  L   + G+LFL   +     +  Y A  +        L+   +L   V+  
Sbjct: 119 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 178

Query: 254 YSWSIFCAWCS 264
           + WS+   W S
Sbjct: 179 FGWSLALGWIS 189


>gi|226437592 transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)

Query: 76  RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
           RL   GPG  D         LG ++     P+ +++SGLWR C                +
Sbjct: 39  RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 74

Query: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
              CT +      P RL N+      T+ +    LL +       L +++ +++ G +  
Sbjct: 75  QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 124

Query: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
            +SF  +  L   + G+LFL   +     +  Y A  +        L+   +L   V+  
Sbjct: 125 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 184

Query: 254 YSWSIFCAWCS 264
           + WS+   W S
Sbjct: 185 FGWSLALGWIS 195


>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
           isoform b [Homo sapiens]
          Length = 296

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 111 YSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHL 170
           +SGLWR C+  G +R            RC  I+Y          +P N T+   +   ++
Sbjct: 55  HSGLWRVCFLAGEERG-----------RCFTIEY---------VMPMN-TQLTSESTVNV 93

Query: 171 LHLRRITAGFLGMAVAVLLCGCIVATVSFFW-EESLTQHVAGLLFLMTGIFCTISLCTYA 229
           L + R    F  +++  +  G I+  +       ++   V+G+ F+++G+   + L  Y 
Sbjct: 94  LKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYI 153

Query: 230 ASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIV 269
           +SI+ ++    K          + Y WS   A+ ++ F++
Sbjct: 154 SSINDEMLNRTK---DAETYFNYKYGWSF--AFAAISFLL 188



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 4  RALVTALSLGLSLCSLGLLVTAIFTDHW 31
          R  +T LS   ++C LGLL  A+ TD+W
Sbjct: 6  RKALTLLSSVFAVCGLGLLGIAVSTDYW 33


>gi|67188443 CD276 antigen isoform a [Homo sapiens]
          Length = 534

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)

Query: 10  LSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPD-----QKNRLMPLSH 64
           +++GLS+C + LLV   F   W     R+ K+SCE   AGA+  D      K  L PL H
Sbjct: 469 VTVGLSVCLIALLVALAFVC-W-----RKIKQSCEEENAGAEDQDGEGEGSKTALQPLKH 522


>gi|13376852 CD276 antigen isoform b [Homo sapiens]
          Length = 316

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)

Query: 10  LSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPD-----QKNRLMPLSH 64
           +++GLS+C + LLV   F   W     R+ K+SCE   AGA+  D      K  L PL H
Sbjct: 251 VTVGLSVCLIALLVALAFVC-W-----RKIKQSCEEENAGAEDQDGEGEGSKTALQPLKH 304


>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
           isoform a [Homo sapiens]
          Length = 260

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 35/181 (19%)

Query: 109 ATYSGLWRKCYF------LGIDRDI-DTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTK 161
           A + GLW+ C        + +DRD      L G A  CT  K+  +             +
Sbjct: 78  AAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEAN-CTYFKFFTTG---------ENAR 127

Query: 162 TIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFC 221
             Q+     ++L       LG+AV  L C CI+  +S   E  L   V  + F ++G+  
Sbjct: 128 IFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLL--RVGAVCFGLSGLLL 185

Query: 222 TISLCTYAASISYDLNRL-------PKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGL 274
            +SL  +  S+   L R+       P+L Y         YSWS+ C     G I+  G  
Sbjct: 186 LVSLEVFRHSVRALLQRVSPEPPPAPRLTYE--------YSWSLGCG-VGAGLILLLGAG 236

Query: 275 C 275
           C
Sbjct: 237 C 237


>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
           sapiens]
          Length = 327

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 32/188 (17%)

Query: 110 TYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWH 169
           T+SGLWR C   G        I KG    C           R+ + P +        E +
Sbjct: 62  THSGLWRVCCIEG--------IYKG---HC----------FRINHFPEDNDYDHDSSE-Y 99

Query: 170 LLHLRRITAGFLGMAVAVLLCG--CIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCT 227
           LL + R ++ F  ++  +LL G  CI A   +  + ++    AG+LF+  G+   I +  
Sbjct: 100 LLRIVRASSVFPILSTILLLLGGLCIGAGRIYSRKNNIVLS-AGILFVAAGLSNIIGIIV 158

Query: 228 YAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGLCIAYPFISRTKI 286
           Y +S + D    P           + Y WS +  + +L FIVA   G+     +I + K 
Sbjct: 159 YISSNTGD----PSDKRDEDKKNHYNYGWSFY--FGALSFIVAETVGVLAVNIYIEKNKE 212

Query: 287 AQLKSGRD 294
            + K+ R+
Sbjct: 213 LRFKTKRE 220


>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
          Length = 525

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 9/49 (18%)

Query: 73  LGRRL--LPGGPGRADPESW------RSLLGLGGLDAECGRPVFATYSG 113
           LG +L  LPGGPG  DP  W       S +G GG + E G P F+  +G
Sbjct: 166 LGEKLSPLPGGPGAGDPRIWPGRSTPESDVGAGG-EEEAGSPPFSPPAG 213


>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
           sapiens]
          Length = 425

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 30/200 (15%)

Query: 97  GGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIP 156
           GG  +E   P   T+SGLWR C   G+ R +           C  I  HF +        
Sbjct: 70  GGGASEKKDPGGLTHSGLWRICCLEGLKRGV-----------CVKIN-HFPED------- 110

Query: 157 FNLTKTIQQDEWHLLHLRRITAGF-LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFL 215
              T        +LL + R ++ F +  A+ +LL G  VA    +  +      AG+LF+
Sbjct: 111 ---TDYDHDSAEYLLRVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFV 167

Query: 216 MTGIFCTISLCTYAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGL 274
             G+   I +  Y ++ + +    P           + Y WS +  +  L FI+A   G+
Sbjct: 168 AAGLSNIIGVIVYISANAGE----PGPKRDEEKKNHYSYGWSFY--FGGLSFILAEVIGV 221

Query: 275 CIAYPFISRTKIAQLKSGRD 294
                +I R++ A  +S  D
Sbjct: 222 LAVNIYIERSREAHCQSRSD 241


>gi|4502539 voltage-dependent calcium channel gamma-1 subunit
          [Homo sapiens]
          Length = 222

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 2  EPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDP--RRHKESCERSRAGADPPDQKNRL 59
          + + L   ++L   L  + L +TA+ TDHW    P    H  +CE +  G          
Sbjct: 3  QTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGL-------WR 55

Query: 60 MPLSHLPLRDSPPLGRRLLPG 80
          +    +P+ DS   G   LPG
Sbjct: 56 ICTKRIPMDDSKTCGPITLPG 76


>gi|153792186 claudin 7 [Homo sapiens]
          Length = 211

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 176 ITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYD 235
           +  GFL M VA +   C         +++      G++F++ G+   ++   Y   I  D
Sbjct: 88  LVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGHQIVTD 147

Query: 236 L-NRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGL 274
             N L      +P ++++ +  +IF  W     ++  G L
Sbjct: 148 FYNPL------IPTNIKYEFGPAIFIGWAGSALVILGGAL 181


>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
           sapiens]
          Length = 323

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 30/177 (16%)

Query: 110 TYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWH 169
           T+SGLWR C   G          KG+ +             ++ + P +        E+ 
Sbjct: 59  THSGLWRTCCLEG--------NFKGLCK-------------QIDHFPEDADYEADTAEYF 97

Query: 170 LLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYA 229
           L  +R  +   +   + + + G  +A   F+         AG+ F+  G+   I +  Y 
Sbjct: 98  LRAVRASSIFPILSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYI 157

Query: 230 ASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGLCIAYPFISRTK 285
           ++ + D ++      S      + Y WS +  + +L FI+A   G+   + FI R K
Sbjct: 158 SANAGDPSK------SDSKKNSYSYGWSFY--FGALSFIIAEMVGVLAVHMFIDRHK 206


>gi|157743252 pecanex-like 3 [Homo sapiens]
          Length = 2034

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 211 GLLFLMTGIFCTI---SLCTYAASISYDLNRLPKLIYSLPADVEHGYSWSI-------FC 260
           G L L+ G F  I     C   AS  Y L    K +    A   HG++W I       FC
Sbjct: 807 GYLLLLKGFFTDIWVFQFCLVIASCQYSLL---KSVQPDAASPMHGHNWVIAYSRPVYFC 863

Query: 261 AWCSLGFIVAAGGLCIAYPFIS 282
             C L +++ A G    +P +S
Sbjct: 864 ICCLLIWLLDALGSAQPFPPVS 885


>gi|15718767 TRAAK [Homo sapiens]
          Length = 393

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 44  ERSRAGADPPDQKNRLMPLSHLPLRDSPPLGRRLLPGGPGRADPES 89
           +R+   A PP+++  L+P    P +   PLGR   P  P +A P S
Sbjct: 288 QRAGPAAPPPEKEQPLLPPPPCPAQ---PLGRPRSPSPPEKAQPPS 330


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 78   LPGGPGRADPESWRSLLGLGGLDAECGRP 106
            LPG PG   P   +   GL GLD + G+P
Sbjct: 1196 LPGSPGPPGPPGIQGPAGLDGLDGKDGKP 1224


>gi|41352721 solute carrier family 36 member 1 [Homo sapiens]
          Length = 476

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 170 LLHLRR--ITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFC---TIS 224
           L+HL +  I  G LG+ +AV   G ++  +S      +  H  G+L      FC     S
Sbjct: 53  LIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKS 112

Query: 225 LCTYAASISYDLNRLP 240
              Y  ++ Y L   P
Sbjct: 113 FVDYGDTVMYGLESSP 128


>gi|120587019 zinc finger protein 318 [Homo sapiens]
          Length = 2279

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 37  RRHKESCERSRAGADPPDQKNRLMPLSHLPLRDSP--PLGRRLLPGGP 82
           R    S  R R  +  P +  R+ P      R SP  P GRRL P GP
Sbjct: 56  RPRSPSGHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFPPGP 103


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 73  LGRRLLPGGPGRADPESWRSLLGLGGLDAECGRP 106
           +G R LPG PG   P      +GL G+D   GRP
Sbjct: 447 MGPRGLPGSPGNIGPAGKEGPVGLPGID---GRP 477


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,409,405
Number of Sequences: 37866
Number of extensions: 598917
Number of successful extensions: 2385
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 98
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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