Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 22748835
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748835 transmembrane protein 178 [Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748835 transmembrane protein 178 [Homo sapiens] 615 e-176
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 130 1e-30
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 129 2e-30
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 129 2e-30
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 129 2e-30
gi|169171548 PREDICTED: hypothetical protein [Homo sapiens] 122 4e-28
gi|169171930 PREDICTED: hypothetical protein [Homo sapiens] 122 4e-28
gi|169170986 PREDICTED: hypothetical protein [Homo sapiens] 122 4e-28
gi|239509056 PREDICTED: hypothetical protein [Homo sapiens] 122 4e-28
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 46 5e-05
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 42 7e-04
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 39 0.007
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 39 0.007
gi|226437592 transmembrane protein 114 [Homo sapiens] 39 0.007
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso... 39 0.007
gi|67188443 CD276 antigen isoform a [Homo sapiens] 37 0.027
gi|13376852 CD276 antigen isoform b [Homo sapiens] 37 0.027
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 37 0.027
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 33 0.23
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 33 0.23
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 33 0.23
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho... 32 0.52
gi|153792186 claudin 7 [Homo sapiens] 31 1.1
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 30 2.6
gi|157743252 pecanex-like 3 [Homo sapiens] 30 2.6
gi|15718767 TRAAK [Homo sapiens] 30 3.3
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 29 4.4
gi|41352721 solute carrier family 36 member 1 [Homo sapiens] 29 5.7
gi|120587019 zinc finger protein 318 [Homo sapiens] 29 5.7
gi|48762934 alpha 2 type I collagen [Homo sapiens] 28 7.4
>gi|22748835 transmembrane protein 178 [Homo sapiens]
Length = 297
Score = 615 bits (1586), Expect = e-176
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM 60
MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM
Sbjct: 1 MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM 60
Query: 61 PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYF 120
PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYF
Sbjct: 61 PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYF 120
Query: 121 LGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGF 180
LGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGF
Sbjct: 121 LGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGF 180
Query: 181 LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLP 240
LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLP
Sbjct: 181 LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLP 240
Query: 241 KLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIAQLKSGRDSTV 297
KLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIAQLKSGRDSTV
Sbjct: 241 KLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIAQLKSGRDSTV 297
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 130 bits (327), Expect = 1e-30
Identities = 57/110 (51%), Positives = 77/110 (70%)
Query: 172 HLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAAS 231
+LRR+TAGF+GMAVA++L G I+ + W+ L Q+VAGLLFLM G FC ISLCT A
Sbjct: 175 YLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAG 234
Query: 232 ISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
I+++L+R P+ +Y LP D+ HGY WS+FCAW LG + +G C P +
Sbjct: 235 INFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 284
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 129 bits (325), Expect = 2e-30
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
LRR+TAGF+GMAVA++L G I+ + W+ L Q+VAGLLFLM G FC ISLCT A I
Sbjct: 68 LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127
Query: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
+++L+R P+ +Y LP D+ HGY WS+FCAW LG + +G C P +
Sbjct: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 129 bits (325), Expect = 2e-30
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
LRR+TAGF+GMAVA++L G I+ + W+ L Q+VAGLLFLM G FC ISLCT A I
Sbjct: 68 LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127
Query: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
+++L+R P+ +Y LP D+ HGY WS+FCAW LG + +G C P +
Sbjct: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 129 bits (325), Expect = 2e-30
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
LRR+TAGF+GMAVA++L G I+ + W+ L Q+VAGLLFLM G FC ISLCT A I
Sbjct: 68 LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127
Query: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
+++L+R P+ +Y LP D+ HGY WS+FCAW LG + +G C P +
Sbjct: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176
>gi|169171548 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 122 bits (306), Expect = 4e-28
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)
Query: 6 LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
L+ L L+LC+LG+L AI +DHWYETD R+H++ C+ + DP N ++
Sbjct: 6 LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62
Query: 65 LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
LPLR S R L G+ + R L + D EC R +T GLWRKC+ G
Sbjct: 63 LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117
Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
D +I LI KG +RCT IKYH+S RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165
>gi|169171930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 122 bits (306), Expect = 4e-28
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)
Query: 6 LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
L+ L L+LC+LG+L AI +DHWYETD R+H++ C+ + DP N ++
Sbjct: 6 LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62
Query: 65 LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
LPLR S R L G+ + R L + D EC R +T GLWRKC+ G
Sbjct: 63 LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117
Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
D +I LI KG +RCT IKYH+S RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165
>gi|169170986 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 122 bits (306), Expect = 4e-28
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)
Query: 6 LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
L+ L L+LC+LG+L AI +DHWYETD R+H++ C+ + DP N ++
Sbjct: 6 LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62
Query: 65 LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
LPLR S R L G+ + R L + D EC R +T GLWRKC+ G
Sbjct: 63 LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117
Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
D +I LI KG +RCT IKYH+S RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165
>gi|239509056 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 122 bits (306), Expect = 4e-28
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)
Query: 6 LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64
L+ L L+LC+LG+L AI +DHWYETD R+H++ C+ + DP N ++
Sbjct: 6 LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62
Query: 65 LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123
LPLR S R L G+ + R L + D EC R +T GLWRKC+ G
Sbjct: 63 LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117
Query: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171
D +I LI KG +RCT IKYH+S RN+ FN+TKTI+QDEWH L
Sbjct: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 45.8 bits (107), Expect = 5e-05
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 109 ATYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEW 168
A ++GLWR C+F G ++ RC A +Y I L + ++
Sbjct: 53 ALHAGLWRVCFFAGREKG-----------RCVASEYFLEPEINL----------VTENTE 91
Query: 169 HLLHLRRITAGFLGMAVAVLLCGCIVATVSFFW-EESLTQHVAGLLFLMTGIFCTISLCT 227
++L R F +++ ++ +++ + + ++ V+G+ F+++G+ + L
Sbjct: 92 NILKTVRTATPFPMVSLFLVFTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVL 151
Query: 228 YAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAG-GLCIAYPFISR 283
Y +SI+ ++ P S + Y WS A+ + F++ G G+ Y F R
Sbjct: 152 YISSINDEVMNRPS---SSEQYFHYRYGWSF--AFAASSFLLKEGAGVMSVYLFTKR 203
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 42.0 bits (97), Expect = 7e-04
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 111 YSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHL 170
+SGLWR C+ G +R RC I+Y +P N T+ + ++
Sbjct: 55 HSGLWRVCFLAGEERG-----------RCFTIEY---------VMPMN-TQLTSESTVNV 93
Query: 171 LHLRRITAGFLGMAVAVLLCGCIVATVSFFW-EESLTQHVAGLLFLMTGIFCTISLCTYA 229
L + R F +++ + G I+ + ++ V+G+ F+++G+ + L Y
Sbjct: 94 LKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYI 153
Query: 230 ASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGLCIAYPFISR 283
+SI+ ++ K + Y WS A+ ++ F++ + G+ Y F+ R
Sbjct: 154 SSINDEMLNRTK---DAETYFNYKYGWSF--AFAAISFLLTESAGVMSVYLFMKR 203
Score = 29.6 bits (65), Expect = 3.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 4 RALVTALSLGLSLCSLGLLVTAIFTDHW 31
R +T LS ++C LGLL A+ TD+W
Sbjct: 6 RKALTLLSSVFAVCGLGLLGIAVSTDYW 33
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)
Query: 76 RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
RL GPG D LG ++ P+ +++SGLWR C +
Sbjct: 39 RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 74
Query: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
CT + P RL N+ T+ + LL + L +++ +++ G +
Sbjct: 75 QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 124
Query: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
+SF + L + G+LFL + + Y A + L+ +L V+
Sbjct: 125 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 184
Query: 254 YSWSIFCAWCS 264
+ WS+ W S
Sbjct: 185 FGWSLALGWIS 195
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)
Query: 76 RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
RL GPG D LG ++ P+ +++SGLWR C +
Sbjct: 33 RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 68
Query: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
CT + P RL N+ T+ + LL + L +++ +++ G +
Sbjct: 69 QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 118
Query: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
+SF + L + G+LFL + + Y A + L+ +L V+
Sbjct: 119 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 178
Query: 254 YSWSIFCAWCS 264
+ WS+ W S
Sbjct: 179 FGWSLALGWIS 189
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)
Query: 76 RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
RL GPG D LG ++ P+ +++SGLWR C +
Sbjct: 39 RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 74
Query: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
CT + P RL N+ T+ + LL + L +++ +++ G +
Sbjct: 75 QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 124
Query: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
+SF + L + G+LFL + + Y A + L+ +L V+
Sbjct: 125 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 184
Query: 254 YSWSIFCAWCS 264
+ WS+ W S
Sbjct: 185 FGWSLALGWIS 195
>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
isoform b [Homo sapiens]
Length = 296
Score = 38.5 bits (88), Expect = 0.007
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 111 YSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHL 170
+SGLWR C+ G +R RC I+Y +P N T+ + ++
Sbjct: 55 HSGLWRVCFLAGEERG-----------RCFTIEY---------VMPMN-TQLTSESTVNV 93
Query: 171 LHLRRITAGFLGMAVAVLLCGCIVATVSFFW-EESLTQHVAGLLFLMTGIFCTISLCTYA 229
L + R F +++ + G I+ + ++ V+G+ F+++G+ + L Y
Sbjct: 94 LKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYI 153
Query: 230 ASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIV 269
+SI+ ++ K + Y WS A+ ++ F++
Sbjct: 154 SSINDEMLNRTK---DAETYFNYKYGWSF--AFAAISFLL 188
Score = 29.6 bits (65), Expect = 3.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 4 RALVTALSLGLSLCSLGLLVTAIFTDHW 31
R +T LS ++C LGLL A+ TD+W
Sbjct: 6 RKALTLLSSVFAVCGLGLLGIAVSTDYW 33
>gi|67188443 CD276 antigen isoform a [Homo sapiens]
Length = 534
Score = 36.6 bits (83), Expect = 0.027
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 10 LSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPD-----QKNRLMPLSH 64
+++GLS+C + LLV F W R+ K+SCE AGA+ D K L PL H
Sbjct: 469 VTVGLSVCLIALLVALAFVC-W-----RKIKQSCEEENAGAEDQDGEGEGSKTALQPLKH 522
>gi|13376852 CD276 antigen isoform b [Homo sapiens]
Length = 316
Score = 36.6 bits (83), Expect = 0.027
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 10 LSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPD-----QKNRLMPLSH 64
+++GLS+C + LLV F W R+ K+SCE AGA+ D K L PL H
Sbjct: 251 VTVGLSVCLIALLVALAFVC-W-----RKIKQSCEEENAGAEDQDGEGEGSKTALQPLKH 304
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 36.6 bits (83), Expect = 0.027
Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
Query: 109 ATYSGLWRKCYF------LGIDRDI-DTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTK 161
A + GLW+ C + +DRD L G A CT K+ + +
Sbjct: 78 AAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEAN-CTYFKFFTTG---------ENAR 127
Query: 162 TIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFC 221
Q+ ++L LG+AV L C CI+ +S E L V + F ++G+
Sbjct: 128 IFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLL--RVGAVCFGLSGLLL 185
Query: 222 TISLCTYAASISYDLNRL-------PKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGL 274
+SL + S+ L R+ P+L Y YSWS+ C G I+ G
Sbjct: 186 LVSLEVFRHSVRALLQRVSPEPPPAPRLTYE--------YSWSLGCG-VGAGLILLLGAG 236
Query: 275 C 275
C
Sbjct: 237 C 237
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 33.5 bits (75), Expect = 0.23
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 32/188 (17%)
Query: 110 TYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWH 169
T+SGLWR C G I KG C R+ + P + E +
Sbjct: 62 THSGLWRVCCIEG--------IYKG---HC----------FRINHFPEDNDYDHDSSE-Y 99
Query: 170 LLHLRRITAGFLGMAVAVLLCG--CIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCT 227
LL + R ++ F ++ +LL G CI A + + ++ AG+LF+ G+ I +
Sbjct: 100 LLRIVRASSVFPILSTILLLLGGLCIGAGRIYSRKNNIVLS-AGILFVAAGLSNIIGIIV 158
Query: 228 YAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGLCIAYPFISRTKI 286
Y +S + D P + Y WS + + +L FIVA G+ +I + K
Sbjct: 159 YISSNTGD----PSDKRDEDKKNHYNYGWSFY--FGALSFIVAETVGVLAVNIYIEKNKE 212
Query: 287 AQLKSGRD 294
+ K+ R+
Sbjct: 213 LRFKTKRE 220
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 73 LGRRL--LPGGPGRADPESW------RSLLGLGGLDAECGRPVFATYSG 113
LG +L LPGGPG DP W S +G GG + E G P F+ +G
Sbjct: 166 LGEKLSPLPGGPGAGDPRIWPGRSTPESDVGAGG-EEEAGSPPFSPPAG 213
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 33.5 bits (75), Expect = 0.23
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 97 GGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIP 156
GG +E P T+SGLWR C G+ R + C I HF +
Sbjct: 70 GGGASEKKDPGGLTHSGLWRICCLEGLKRGV-----------CVKIN-HFPED------- 110
Query: 157 FNLTKTIQQDEWHLLHLRRITAGF-LGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFL 215
T +LL + R ++ F + A+ +LL G VA + + AG+LF+
Sbjct: 111 ---TDYDHDSAEYLLRVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFV 167
Query: 216 MTGIFCTISLCTYAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGL 274
G+ I + Y ++ + + P + Y WS + + L FI+A G+
Sbjct: 168 AAGLSNIIGVIVYISANAGE----PGPKRDEEKKNHYSYGWSFY--FGGLSFILAEVIGV 221
Query: 275 CIAYPFISRTKIAQLKSGRD 294
+I R++ A +S D
Sbjct: 222 LAVNIYIERSREAHCQSRSD 241
>gi|4502539 voltage-dependent calcium channel gamma-1 subunit
[Homo sapiens]
Length = 222
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 2 EPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDP--RRHKESCERSRAGADPPDQKNRL 59
+ + L ++L L + L +TA+ TDHW P H +CE + G
Sbjct: 3 QTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGL-------WR 55
Query: 60 MPLSHLPLRDSPPLGRRLLPG 80
+ +P+ DS G LPG
Sbjct: 56 ICTKRIPMDDSKTCGPITLPG 76
>gi|153792186 claudin 7 [Homo sapiens]
Length = 211
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 176 ITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYD 235
+ GFL M VA + C +++ G++F++ G+ ++ Y I D
Sbjct: 88 LVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGHQIVTD 147
Query: 236 L-NRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGL 274
N L +P ++++ + +IF W ++ G L
Sbjct: 148 FYNPL------IPTNIKYEFGPAIFIGWAGSALVILGGAL 181
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 30.0 bits (66), Expect = 2.6
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 30/177 (16%)
Query: 110 TYSGLWRKCYFLGIDRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWH 169
T+SGLWR C G KG+ + ++ + P + E+
Sbjct: 59 THSGLWRTCCLEG--------NFKGLCK-------------QIDHFPEDADYEADTAEYF 97
Query: 170 LLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYA 229
L +R + + + + + G +A F+ AG+ F+ G+ I + Y
Sbjct: 98 LRAVRASSIFPILSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYI 157
Query: 230 ASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVA-AGGLCIAYPFISRTK 285
++ + D ++ S + Y WS + + +L FI+A G+ + FI R K
Sbjct: 158 SANAGDPSK------SDSKKNSYSYGWSFY--FGALSFIIAEMVGVLAVHMFIDRHK 206
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 30.0 bits (66), Expect = 2.6
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 211 GLLFLMTGIFCTI---SLCTYAASISYDLNRLPKLIYSLPADVEHGYSWSI-------FC 260
G L L+ G F I C AS Y L K + A HG++W I FC
Sbjct: 807 GYLLLLKGFFTDIWVFQFCLVIASCQYSLL---KSVQPDAASPMHGHNWVIAYSRPVYFC 863
Query: 261 AWCSLGFIVAAGGLCIAYPFIS 282
C L +++ A G +P +S
Sbjct: 864 ICCLLIWLLDALGSAQPFPPVS 885
>gi|15718767 TRAAK [Homo sapiens]
Length = 393
Score = 29.6 bits (65), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 44 ERSRAGADPPDQKNRLMPLSHLPLRDSPPLGRRLLPGGPGRADPES 89
+R+ A PP+++ L+P P + PLGR P P +A P S
Sbjct: 288 QRAGPAAPPPEKEQPLLPPPPCPAQ---PLGRPRSPSPPEKAQPPS 330
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 29.3 bits (64), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 78 LPGGPGRADPESWRSLLGLGGLDAECGRP 106
LPG PG P + GL GLD + G+P
Sbjct: 1196 LPGSPGPPGPPGIQGPAGLDGLDGKDGKP 1224
>gi|41352721 solute carrier family 36 member 1 [Homo sapiens]
Length = 476
Score = 28.9 bits (63), Expect = 5.7
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 170 LLHLRR--ITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFC---TIS 224
L+HL + I G LG+ +AV G ++ +S + H G+L FC S
Sbjct: 53 LIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKS 112
Query: 225 LCTYAASISYDLNRLP 240
Y ++ Y L P
Sbjct: 113 FVDYGDTVMYGLESSP 128
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 37 RRHKESCERSRAGADPPDQKNRLMPLSHLPLRDSP--PLGRRLLPGGP 82
R S R R + P + R+ P R SP P GRRL P GP
Sbjct: 56 RPRSPSGHRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLFPPGP 103
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 28.5 bits (62), Expect = 7.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 73 LGRRLLPGGPGRADPESWRSLLGLGGLDAECGRP 106
+G R LPG PG P +GL G+D GRP
Sbjct: 447 MGPRGLPGSPGNIGPAGKEGPVGLPGID---GRP 477
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,409,405
Number of Sequences: 37866
Number of extensions: 598917
Number of successful extensions: 2385
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 98
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.