Guide to the Human Genome
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Name: LOC100129514 Sequence: fasta or formatted (169aa) NCBI GI: 169170986
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {169aa} PREDICTED: hypothetical protein
alt mRNA {169aa} PREDICTED: hypothetical protein
alt mRNA {169aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         16           2
 C cysteine            4.1          7           1
 D aspartate           4.7          8           1
 E glutamate           4.1          7           1
 F phenylalanine       3.0          5           1
 G glycine             4.7          8           1
 H histidine           3.0          5           1
 I isoleucine          5.3          9           1
 K lysine              4.7          8           1
 L leucine            10.7         18           3
 M methionine          2.4          4           1
 N asparagine          6.5         11           5
 P proline             3.0          5           1
 Q glutamine           2.4          4           1
 R arginine           13.0         22           2
 S serine              5.3          9           2
 T threonine           5.9         10           1
 V valine              1.2          2           1
 W tryptophan          2.4          4           1
 Y tyrosine            4.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129514          1.000   PREDICTED: hypothetical protein 
LOC100129514          1.000   PREDICTED: hypothetical protein 
LOC100129514          1.000   PREDICTED: hypothetical protein 
TMEM178               0.293   transmembrane protein 178 
PDZD7                 0.009   PDZ domain containing 7 
SH3TC1                0.009   SH3 domain and tetratricopeptide repeats 1 
FKBP9                 0.006   FK506 binding protein 9 
CACNG5                0.006   voltage-dependent calcium channel gamma-5 subunit is...
CACNG5                0.006   voltage-dependent calcium channel gamma-5 subunit iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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