BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|22748617 defensin, beta 105A precursor [Homo sapiens] (78 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|22748617 defensin, beta 105A precursor [Homo sapiens] 170 3e-43 gi|103485141 defensin, beta 105B precursor [Homo sapiens] 170 3e-43 gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 40 4e-04 gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 40 4e-04 gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 40 4e-04 gi|22748611 defensin, beta 106A precursor [Homo sapiens] 35 0.013 gi|82734219 beta-defensin 114 [Homo sapiens] 35 0.013 gi|103485143 defensin, beta 106B precursor [Homo sapiens] 35 0.013 gi|103485139 defensin, beta 104A precursor [Homo sapiens] 33 0.038 gi|103485137 defensin, beta 104B precursor [Homo sapiens] 33 0.038 gi|83582798 beta-defensin 115 [Homo sapiens] 33 0.064 gi|82734214 beta-defensin 111 [Homo sapiens] 33 0.064 gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14 gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14 gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14 gi|50344744 beta-defensin 108B [Homo sapiens] 32 0.14 gi|18250304 beta defensin 129 precursor [Homo sapiens] 30 0.32 gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 29 0.71 gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 28 1.2 gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 28 1.2 gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 28 1.2 gi|116517226 beta-defensin 135 [Homo sapiens] 28 1.2 gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 28 1.2 gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 28 2.1 gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 27 2.7 gi|103485147 defensin, beta 107B precursor [Homo sapiens] 27 3.5 gi|103485145 defensin, beta 107A precursor [Homo sapiens] 27 3.5 gi|239755437 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6 gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo ... 27 4.6 gi|239744221 PREDICTED: hypothetical protein XP_002343077 [Homo ... 27 4.6 >gi|22748617 defensin, beta 105A precursor [Homo sapiens] Length = 78 Score = 170 bits (430), Expect = 3e-43 Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60 MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN Sbjct: 1 MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60 Query: 61 EKPDGNCRLNFLCCRQRI 78 EKPDGNCRLNFLCCRQRI Sbjct: 61 EKPDGNCRLNFLCCRQRI 78 >gi|103485141 defensin, beta 105B precursor [Homo sapiens] Length = 78 Score = 170 bits (430), Expect = 3e-43 Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60 MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN Sbjct: 1 MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60 Query: 61 EKPDGNCRLNFLCCRQRI 78 EKPDGNCRLNFLCCRQRI Sbjct: 61 EKPDGNCRLNFLCCRQRI 78 >gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] Length = 61 Score = 40.0 bits (92), Expect = 4e-04 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 K FLF +FF LV + + + + + SC + RGKCR EC + EKP G Sbjct: 2 KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50 Query: 66 NC-RLNFLC 73 C +LN C Sbjct: 51 FCTKLNANC 59 >gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] Length = 61 Score = 40.0 bits (92), Expect = 4e-04 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 K FLF +FF LV + + + + + SC + RGKCR EC + EKP G Sbjct: 2 KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50 Query: 66 NC-RLNFLC 73 C +LN C Sbjct: 51 FCTKLNANC 59 >gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] Length = 61 Score = 40.0 bits (92), Expect = 4e-04 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 K FLF +FF LV + + + + + SC + RGKCR EC + EKP G Sbjct: 2 KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50 Query: 66 NC-RLNFLC 73 C +LN C Sbjct: 51 FCTKLNANC 59 >gi|22748611 defensin, beta 106A precursor [Homo sapiens] Length = 65 Score = 35.0 bits (79), Expect = 0.013 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 +TF FLFA+ F L P+ E C +G C+ C +NE+ Sbjct: 2 RTFLFLFAVLFFLT----------------PAKNAFFDEKCNKLKGTCKNNCGKNEELIA 45 Query: 66 NCRLNFLCCR 75 C+ + CCR Sbjct: 46 LCQKSLKCCR 55 >gi|82734219 beta-defensin 114 [Homo sapiens] Length = 69 Score = 35.0 bits (79), Expect = 0.013 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 + FY+L + ++ LP+ C + C G+C+++CLE+EK Sbjct: 2 RIFYYLHFLCYVTFILPATCT-------------LVNADRCTKRYGRCKRDCLESEKQID 48 Query: 66 NCRL-NFLCCRQRI 78 C L +CC +++ Sbjct: 49 ICSLPRKICCTEKL 62 >gi|103485143 defensin, beta 106B precursor [Homo sapiens] Length = 65 Score = 35.0 bits (79), Expect = 0.013 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 +TF FLFA+ F L P+ E C +G C+ C +NE+ Sbjct: 2 RTFLFLFAVLFFLT----------------PAKNAFFDEKCNKLKGTCKNNCGKNEELIA 45 Query: 66 NCRLNFLCCR 75 C+ + CCR Sbjct: 46 LCQKSLKCCR 55 >gi|103485139 defensin, beta 104A precursor [Homo sapiens] Length = 72 Score = 33.5 bits (75), Expect = 0.038 Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77 EF + C G +CRK+C E G C + CC ++ Sbjct: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 >gi|103485137 defensin, beta 104B precursor [Homo sapiens] Length = 72 Score = 33.5 bits (75), Expect = 0.038 Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77 EF + C G +CRK+C E G C + CC ++ Sbjct: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 >gi|83582798 beta-defensin 115 [Homo sapiens] Length = 88 Score = 32.7 bits (73), Expect = 0.064 Identities = 12/29 (41%), Positives = 15/29 (51%) Query: 46 CKLGRGKCRKECLENEKPDGNCRLNFLCC 74 C G G+CRK C E E+ C +CC Sbjct: 38 CYYGTGRCRKSCKEIERKKEKCGEKHICC 66 >gi|82734214 beta-defensin 111 [Homo sapiens] Length = 67 Score = 32.7 bits (73), Expect = 0.064 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 10 FLFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNC- 67 F F + F + LP+ + +P G + C++G G+C+ +C ENE C Sbjct: 6 FFFILHFWVTILPA--------KKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCI 57 Query: 68 RLNFLCCRQR 77 R CC Q+ Sbjct: 58 RPGTHCCLQQ 67 >gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69 LFA+FF + SQ P+ G+F E C+ G CR CLE E G C Sbjct: 17 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 61 Query: 70 NFLCC 74 + CC Sbjct: 62 SRPCC 66 >gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69 LFA+FF + SQ P+ G+F E C+ G CR CLE E G C Sbjct: 17 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 61 Query: 70 NFLCC 74 + CC Sbjct: 62 SRPCC 66 >gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] Length = 73 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69 LFA+FF + SQ P+ G+F E C+ G CR CLE E G C Sbjct: 7 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51 Query: 70 NFLCC 74 + CC Sbjct: 52 SRPCC 56 >gi|50344744 beta-defensin 108B [Homo sapiens] Length = 73 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69 LFA+FF + SQ P+ G+F E C+ G CR CLE E G C Sbjct: 7 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51 Query: 70 NFLCC 74 + CC Sbjct: 52 SQPCC 56 >gi|18250304 beta defensin 129 precursor [Homo sapiens] Length = 183 Score = 30.4 bits (67), Expect = 0.32 Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQRI 78 EF C +G G+CR C +EK C++ C ++ Sbjct: 20 EFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPKV 59 >gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] Length = 84 Score = 29.3 bits (64), Expect = 0.71 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 29 LDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQ 76 L +P SG+ + C G CR C +NE+P CR CC Q Sbjct: 12 LAIEEPVISGKRHILR-CMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58 >gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] Length = 53 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74 +SC + +G CRK C E+ C+ CC Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46 >gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] Length = 53 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74 +SC + +G CRK C E+ C+ CC Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46 >gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] Length = 53 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74 +SC + +G CRK C E+ C+ CC Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46 >gi|116517226 beta-defensin 135 [Homo sapiens] Length = 77 Score = 28.5 bits (62), Expect = 1.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 45 SCKLGRGKCRKECLENEKPDGNCRLNFLCC 74 SC +G CR +CL+NE+ C LCC Sbjct: 36 SCWRLQGTCRPKCLKNEQYRILCDTIHLCC 65 >gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] Length = 99 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/25 (44%), Positives = 13/25 (52%) Query: 50 RGKCRKECLENEKPDGNCRLNFLCC 74 +G CRK C NE P+ C CC Sbjct: 30 QGHCRKICRVNEVPEALCENGRYCC 54 >gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] Length = 156 Score = 27.7 bits (60), Expect = 2.1 Identities = 13/37 (35%), Positives = 17/37 (45%) Query: 38 GEFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74 G F + K G CR+ CL+ E+ CR CC Sbjct: 20 GSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCC 56 >gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo sapiens] Length = 111 Score = 27.3 bits (59), Expect = 2.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74 E C+ G C+ CLE E G C + CC Sbjct: 64 EICERPNGSCQDFCLETEIHVGRCLNSRPCC 94 >gi|103485147 defensin, beta 107B precursor [Homo sapiens] Length = 70 Score = 26.9 bits (58), Expect = 3.5 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 14/74 (18%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 K F F+ A +L Q+ QA + S K G C ECL E G Sbjct: 6 KIFVFILAALILLAQI---FQARTAIHRALIS---------KRMEGHCEAECLTFEVKIG 53 Query: 66 NCRLNF--LCCRQR 77 CR CC+ R Sbjct: 54 GCRAELAPFCCKNR 67 >gi|103485145 defensin, beta 107A precursor [Homo sapiens] Length = 70 Score = 26.9 bits (58), Expect = 3.5 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 14/74 (18%) Query: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65 K F F+ A +L Q+ QA + S K G C ECL E G Sbjct: 6 KIFVFILAALILLAQI---FQARTAIHRALIS---------KRMEGHCEAECLTFEVKIG 53 Query: 66 NCRLNF--LCCRQR 77 CR CC+ R Sbjct: 54 GCRAELAPFCCKNR 67 >gi|239755437 PREDICTED: hypothetical protein [Homo sapiens] Length = 199 Score = 26.6 bits (57), Expect = 4.6 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 15 FFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGN 66 FF+ V LP G +G DFS G F + G G C + + P G+ Sbjct: 138 FFVAVSLPGGGGSGADFSL---LGAFLGLVALLGGLGSCGRRSHSSPGPAGS 186 >gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo sapiens] Length = 122 Score = 26.6 bits (57), Expect = 4.6 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 15 FFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGN 66 FF+ V LP G +G DFS G F + G G C + + P G+ Sbjct: 61 FFVAVSLPGGGGSGADFSL---LGAFLGLVALLGGLGSCGRRSHSSPGPAGS 109 >gi|239744221 PREDICTED: hypothetical protein XP_002343077 [Homo sapiens] Length = 199 Score = 26.6 bits (57), Expect = 4.6 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 15 FFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGN 66 FF+ V LP G +G DFS G F + G G C + + P G+ Sbjct: 138 FFVAVSLPGGGGSGADFSL---LGAFLGLVALLGGLGSCGRRSHSSPGPAGS 186 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.333 0.147 0.495 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,616,987 Number of Sequences: 37866 Number of extensions: 159198 Number of successful extensions: 361 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 328 Number of HSP's gapped (non-prelim): 37 length of query: 78 length of database: 18,247,518 effective HSP length: 50 effective length of query: 28 effective length of database: 16,354,218 effective search space: 457918104 effective search space used: 457918104 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.