Guide to the Human Genome
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Search of human proteins with 22748617

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748617 defensin, beta 105A precursor [Homo sapiens]
         (78 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22748617 defensin, beta 105A precursor [Homo sapiens]              170   3e-43
gi|103485141 defensin, beta 105B precursor [Homo sapiens]             170   3e-43
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]              40   4e-04
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]              40   4e-04
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]               40   4e-04
gi|22748611 defensin, beta 106A precursor [Homo sapiens]               35   0.013
gi|82734219 beta-defensin 114 [Homo sapiens]                           35   0.013
gi|103485143 defensin, beta 106B precursor [Homo sapiens]              35   0.013
gi|103485139 defensin, beta 104A precursor [Homo sapiens]              33   0.038
gi|103485137 defensin, beta 104B precursor [Homo sapiens]              33   0.038
gi|83582798 beta-defensin 115 [Homo sapiens]                           33   0.064
gi|82734214 beta-defensin 111 [Homo sapiens]                           33   0.064
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|50344744 beta-defensin 108B [Homo sapiens]                          32   0.14 
gi|18250304 beta defensin 129 precursor [Homo sapiens]                 30   0.32 
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]      29   0.71 
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]              28   1.2  
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]              28   1.2  
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]              28   1.2  
gi|116517226 beta-defensin 135 [Homo sapiens]                          28   1.2  
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]            28   1.2  
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]            28   2.1  
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ...    27   2.7  
gi|103485147 defensin, beta 107B precursor [Homo sapiens]              27   3.5  
gi|103485145 defensin, beta 107A precursor [Homo sapiens]              27   3.5  
gi|239755437 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo ...    27   4.6  
gi|239744221 PREDICTED: hypothetical protein XP_002343077 [Homo ...    27   4.6  

>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
          Length = 78

 Score =  170 bits (430), Expect = 3e-43
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60
          MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN
Sbjct: 1  MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60

Query: 61 EKPDGNCRLNFLCCRQRI 78
          EKPDGNCRLNFLCCRQRI
Sbjct: 61 EKPDGNCRLNFLCCRQRI 78


>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
          Length = 78

 Score =  170 bits (430), Expect = 3e-43
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60
          MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN
Sbjct: 1  MALIRKTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLEN 60

Query: 61 EKPDGNCRLNFLCCRQRI 78
          EKPDGNCRLNFLCCRQRI
Sbjct: 61 EKPDGNCRLNFLCCRQRI 78


>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          K   FLF +FF LV + +  +  +  +            SC + RGKCR EC + EKP G
Sbjct: 2  KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50

Query: 66 NC-RLNFLC 73
           C +LN  C
Sbjct: 51 FCTKLNANC 59


>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          K   FLF +FF LV + +  +  +  +            SC + RGKCR EC + EKP G
Sbjct: 2  KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50

Query: 66 NC-RLNFLC 73
           C +LN  C
Sbjct: 51 FCTKLNANC 59


>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
          Length = 61

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          K   FLF +FF LV + +  +  +  +            SC + RGKCR EC + EKP G
Sbjct: 2  KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50

Query: 66 NC-RLNFLC 73
           C +LN  C
Sbjct: 51 FCTKLNANC 59


>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
          Length = 65

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          +TF FLFA+ F L                 P+      E C   +G C+  C +NE+   
Sbjct: 2  RTFLFLFAVLFFLT----------------PAKNAFFDEKCNKLKGTCKNNCGKNEELIA 45

Query: 66 NCRLNFLCCR 75
           C+ +  CCR
Sbjct: 46 LCQKSLKCCR 55


>gi|82734219 beta-defensin 114 [Homo sapiens]
          Length = 69

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          + FY+L  + ++   LP+ C                  + C    G+C+++CLE+EK   
Sbjct: 2  RIFYYLHFLCYVTFILPATCT-------------LVNADRCTKRYGRCKRDCLESEKQID 48

Query: 66 NCRL-NFLCCRQRI 78
           C L   +CC +++
Sbjct: 49 ICSLPRKICCTEKL 62


>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
          Length = 65

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          +TF FLFA+ F L                 P+      E C   +G C+  C +NE+   
Sbjct: 2  RTFLFLFAVLFFLT----------------PAKNAFFDEKCNKLKGTCKNNCGKNEELIA 45

Query: 66 NCRLNFLCCR 75
           C+ +  CCR
Sbjct: 46 LCQKSLKCCR 55


>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
          Length = 72

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77
          EF +   C  G  +CRK+C   E   G C   + CC ++
Sbjct: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61


>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
          Length = 72

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77
          EF +   C  G  +CRK+C   E   G C   + CC ++
Sbjct: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61


>gi|83582798 beta-defensin 115 [Homo sapiens]
          Length = 88

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 46 CKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          C  G G+CRK C E E+    C    +CC
Sbjct: 38 CYYGTGRCRKSCKEIERKKEKCGEKHICC 66


>gi|82734214 beta-defensin 111 [Homo sapiens]
          Length = 67

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 10 FLFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNC- 67
          F F + F +  LP+         + +P  G   +   C++G G+C+ +C ENE     C 
Sbjct: 6  FFFILHFWVTILPA--------KKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCI 57

Query: 68 RLNFLCCRQR 77
          R    CC Q+
Sbjct: 58 RPGTHCCLQQ 67


>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69
          LFA+FF +             SQ  P+ G+F   E C+   G CR  CLE E   G C  
Sbjct: 17 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 61

Query: 70 NFLCC 74
          +  CC
Sbjct: 62 SRPCC 66


>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69
          LFA+FF +             SQ  P+ G+F   E C+   G CR  CLE E   G C  
Sbjct: 17 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 61

Query: 70 NFLCC 74
          +  CC
Sbjct: 62 SRPCC 66


>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 73

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69
          LFA+FF +             SQ  P+ G+F   E C+   G CR  CLE E   G C  
Sbjct: 7  LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51

Query: 70 NFLCC 74
          +  CC
Sbjct: 52 SRPCC 56


>gi|50344744 beta-defensin 108B [Homo sapiens]
          Length = 73

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69
          LFA+FF +             SQ  P+ G+F   E C+   G CR  CLE E   G C  
Sbjct: 7  LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51

Query: 70 NFLCC 74
          +  CC
Sbjct: 52 SQPCC 56


>gi|18250304 beta defensin 129 precursor [Homo sapiens]
          Length = 183

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQRI 78
          EF     C +G G+CR  C  +EK    C++   C   ++
Sbjct: 20 EFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPKV 59


>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
          Length = 84

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 29 LDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQ 76
          L   +P  SG+  +   C    G CR  C +NE+P   CR    CC Q
Sbjct: 12 LAIEEPVISGKRHILR-CMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58


>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
          Length = 53

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          +SC + +G CRK C   E+    C+    CC
Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46


>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
          Length = 53

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          +SC + +G CRK C   E+    C+    CC
Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46


>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
          Length = 53

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          +SC + +G CRK C   E+    C+    CC
Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46


>gi|116517226 beta-defensin 135 [Homo sapiens]
          Length = 77

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 45 SCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          SC   +G CR +CL+NE+    C    LCC
Sbjct: 36 SCWRLQGTCRPKCLKNEQYRILCDTIHLCC 65


>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
          Length = 99

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 50 RGKCRKECLENEKPDGNCRLNFLCC 74
          +G CRK C  NE P+  C     CC
Sbjct: 30 QGHCRKICRVNEVPEALCENGRYCC 54


>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
          Length = 156

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 38 GEFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          G F   +  K   G CR+ CL+ E+    CR    CC
Sbjct: 20 GSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCC 56


>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
          sapiens]
          Length = 111

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 44 ESCKLGRGKCRKECLENEKPDGNCRLNFLCC 74
          E C+   G C+  CLE E   G C  +  CC
Sbjct: 64 EICERPNGSCQDFCLETEIHVGRCLNSRPCC 94


>gi|103485147 defensin, beta 107B precursor [Homo sapiens]
          Length = 70

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          K F F+ A   +L Q+    QA     +   S         K   G C  ECL  E   G
Sbjct: 6  KIFVFILAALILLAQI---FQARTAIHRALIS---------KRMEGHCEAECLTFEVKIG 53

Query: 66 NCRLNF--LCCRQR 77
           CR      CC+ R
Sbjct: 54 GCRAELAPFCCKNR 67


>gi|103485145 defensin, beta 107A precursor [Homo sapiens]
          Length = 70

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 6  KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
          K F F+ A   +L Q+    QA     +   S         K   G C  ECL  E   G
Sbjct: 6  KIFVFILAALILLAQI---FQARTAIHRALIS---------KRMEGHCEAECLTFEVKIG 53

Query: 66 NCRLNF--LCCRQR 77
           CR      CC+ R
Sbjct: 54 GCRAELAPFCCKNR 67


>gi|239755437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 199

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 15  FFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGN 66
           FF+ V LP G  +G DFS     G F    +   G G C +    +  P G+
Sbjct: 138 FFVAVSLPGGGGSGADFSL---LGAFLGLVALLGGLGSCGRRSHSSPGPAGS 186


>gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo
           sapiens]
          Length = 122

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 15  FFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGN 66
           FF+ V LP G  +G DFS     G F    +   G G C +    +  P G+
Sbjct: 61  FFVAVSLPGGGGSGADFSL---LGAFLGLVALLGGLGSCGRRSHSSPGPAGS 109


>gi|239744221 PREDICTED: hypothetical protein XP_002343077 [Homo
           sapiens]
          Length = 199

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 15  FFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGN 66
           FF+ V LP G  +G DFS     G F    +   G G C +    +  P G+
Sbjct: 138 FFVAVSLPGGGGSGADFSL---LGAFLGLVALLGGLGSCGRRSHSSPGPAGS 186


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.333    0.147    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,616,987
Number of Sequences: 37866
Number of extensions: 159198
Number of successful extensions: 361
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 37
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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