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Search of human proteins with 226528302
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens] 263 4e-71
gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens] 248 1e-66
gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens] 248 1e-66
gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens] 140 3e-34
gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens] 125 7e-30
gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens] 125 9e-30
gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens] 125 9e-30
gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens] 125 9e-30
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 31 0.24
gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens] 30 0.41
gi|118640873 X-box binding protein 1 isoform XBP1(S) [Homo sapiens] 30 0.41
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 30 0.41
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 30 0.41
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 30 0.54
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 30 0.54
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 30 0.54
gi|7662352 RUN and FYVE domain containing 3 isoform 2 [Homo sapi... 29 1.2
gi|82697315 RUN and FYVE domain containing 3 isoform 1 [Homo sap... 29 1.2
gi|195220720 RUN and FYVE domain containing 3 isoform 3 [Homo sa... 29 1.2
gi|38707981 calpain 12 [Homo sapiens] 28 1.6
gi|189458898 postmeiotic segregation 1 isoform c [Homo sapiens] 28 2.1
gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens] 28 2.1
gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens] 28 2.1
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 28 2.7
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 28 2.7
gi|169178850 PREDICTED: similar to coiled-coil domain containing... 28 2.7
gi|239747109 PREDICTED: hypothetical protein XP_002344496 [Homo ... 28 2.7
gi|54234024 vacuolar protein sorting 39 [Homo sapiens] 28 2.7
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 28 2.7
gi|149363632 coiled-coil domain containing 29 [Homo sapiens] 28 2.7
>gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens]
Length = 131
Score = 263 bits (671), Expect = 4e-71
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 120
DHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 120
Query: 121 FQTTDTKSKRK 131
FQTTDTKSKRK
Sbjct: 121 FQTTDTKSKRK 131
>gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens]
Length = 158
Score = 248 bits (633), Expect = 1e-66
Identities = 131/158 (82%), Positives = 131/158 (82%), Gaps = 27/158 (17%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMD---------------------------DLSARVDAV 93
DHSSRILYPRPKSLLPKMMNADMD DLSARVDAV
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 120
Query: 94 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 121 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
>gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens]
Length = 159
Score = 248 bits (632), Expect = 1e-66
Identities = 131/159 (82%), Positives = 131/159 (82%), Gaps = 28/159 (17%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 92
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
Query: 93 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
>gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens]
Length = 94
Score = 140 bits (353), Expect = 3e-34
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 120
DHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 83
Query: 121 FQTTDTKSKRK 131
FQTTDTKSKRK
Sbjct: 84 FQTTDTKSKRK 94
>gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens]
Length = 121
Score = 125 bits (315), Expect = 7e-30
Identities = 71/98 (72%), Positives = 71/98 (72%), Gaps = 27/98 (27%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD---------------------------DLSARVDAV 93
DHSSRILYPRPKSLLPKMMNADMD DLSARVDAV
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 83
Query: 94 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 121
>gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 125 bits (314), Expect = 9e-30
Identities = 71/99 (71%), Positives = 71/99 (71%), Gaps = 28/99 (28%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 92
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 93 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 125 bits (314), Expect = 9e-30
Identities = 71/99 (71%), Positives = 71/99 (71%), Gaps = 28/99 (28%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 92
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 93 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 125 bits (314), Expect = 9e-30
Identities = 71/99 (71%), Positives = 71/99 (71%), Gaps = 28/99 (28%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 92
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 93 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 31.2 bits (69), Expect = 0.24
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 77 KMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMS 116
K+++ D + LSA V ++ EEN KL SE + L + +E +S
Sbjct: 674 KVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLS 713
>gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens]
Length = 261
Score = 30.4 bits (67), Expect = 0.41
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 45 PEVSAGSLLLPAPQAEDHSSRI-LYPRPKSLLPKMMN------------ADMDDLSARVD 91
PE ++G L PQA L P K+L K+ N A M +L +V
Sbjct: 48 PEAASGGL----PQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVV 103
Query: 92 AVKEENLKLKSENQVLGQYIENLM 115
++EEN KL ENQ+L + L+
Sbjct: 104 DLEEENQKLLLENQLLREKTHGLV 127
>gi|118640873 X-box binding protein 1 isoform XBP1(S) [Homo sapiens]
Length = 376
Score = 30.4 bits (67), Expect = 0.41
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 45 PEVSAGSLLLPAPQAEDHSSRI-LYPRPKSLLPKMMN------------ADMDDLSARVD 91
PE ++G L PQA L P K+L K+ N A M +L +V
Sbjct: 48 PEAASGGL----PQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVV 103
Query: 92 AVKEENLKLKSENQVLGQYIENLM 115
++EEN KL ENQ+L + L+
Sbjct: 104 DLEEENQKLLLENQLLREKTHGLV 127
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 0.41
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 23 SRRTFCGRSGRSCRGQLVQVS---RPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMM 79
+R G GR GQ++ ++ P+V+ G + AE + S +P P LL
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
Query: 80 NADMD 84
+ D D
Sbjct: 123 DLDYD 127
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 0.41
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 23 SRRTFCGRSGRSCRGQLVQVS---RPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMM 79
+R G GR GQ++ ++ P+V+ G + AE + S +P P LL
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
Query: 80 NADMD 84
+ D D
Sbjct: 123 DLDYD 127
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 38 QLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEEN 97
Q + VS+ E+S+G L P P D + L + + + M++ ++ +L ++ D EE+
Sbjct: 1495 QYITVSKEELSSGDSLSPDPWKRDAKEK-LEKQQQMHIVDMLSKEIQELQSKPDRSAEES 1553
Query: 98 LKLK 101
+L+
Sbjct: 1554 DRLR 1557
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 38 QLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEEN 97
Q + VS+ E+S+G L P P D + L + + + M++ ++ +L ++ D EE+
Sbjct: 1496 QYITVSKEELSSGDSLSPDPWKRDAKEK-LEKQQQMHIVDMLSKEIQELQSKPDRSAEES 1554
Query: 98 LKLK 101
+L+
Sbjct: 1555 DRLR 1558
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 38 QLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEEN 97
Q + VS+ E+S+G L P P D + L + + + M++ ++ +L ++ D EE+
Sbjct: 1480 QYITVSKEELSSGDSLSPDPWKRDAKEK-LEKQQQMHIVDMLSKEIQELQSKPDRSAEES 1538
Query: 98 LKLK 101
+L+
Sbjct: 1539 DRLR 1542
>gi|7662352 RUN and FYVE domain containing 3 isoform 2 [Homo
sapiens]
Length = 469
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 75 LPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENL 114
L + +NA +++L A+VDA+++ N KL E V I L
Sbjct: 270 LNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITL 309
>gi|82697315 RUN and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 620
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 75 LPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENL 114
L + +NA +++L A+VDA+++ N KL E V I L
Sbjct: 270 LNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITL 309
>gi|195220720 RUN and FYVE domain containing 3 isoform 3 [Homo
sapiens]
Length = 506
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 75 LPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENL 114
L + +NA +++L A+VDA+++ N KL E V I L
Sbjct: 330 LNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITL 369
>gi|38707981 calpain 12 [Homo sapiens]
Length = 719
Score = 28.5 bits (62), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 69 PRPKSLLPKMMNADMDDLSARVDAVK 94
PR +LLP+++ AD LSAR D +
Sbjct: 466 PRSHALLPRLLRADRSPLSARRDVTR 491
>gi|189458898 postmeiotic segregation 1 isoform c [Homo sapiens]
Length = 770
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 41 QVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSL----------LPKMMNADMDDLSARV 90
++S E S G++L + +IL P KSL +P+ MN + D + +
Sbjct: 492 EISADEWSRGNILKNSVGENIEPVKILVPE-KSLPCKVSNNNYPIPEQMNLNEDSCNKKS 550
Query: 91 DAVKEENLKLKSENQVLGQYIENLMSASSVF 121
+ + ++ K+ + + + + I+ MSAS++F
Sbjct: 551 NVIDNKSGKVTAYDLLSNRVIKKPMSASALF 581
>gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens]
Length = 893
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 41 QVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSL----------LPKMMNADMDDLSARV 90
++S E S G++L + +IL P KSL +P+ MN + D + +
Sbjct: 453 EISADEWSRGNILKNSVGENIEPVKILVPE-KSLPCKVSNNNYPIPEQMNLNEDSCNKKS 511
Query: 91 DAVKEENLKLKSENQVLGQYIENLMSASSVF 121
+ + ++ K+ + + + + I+ MSAS++F
Sbjct: 512 NVIDNKSGKVTAYDLLSNRVIKKPMSASALF 542
>gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens]
Length = 932
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 41 QVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSL----------LPKMMNADMDDLSARV 90
++S E S G++L + +IL P KSL +P+ MN + D + +
Sbjct: 492 EISADEWSRGNILKNSVGENIEPVKILVPE-KSLPCKVSNNNYPIPEQMNLNEDSCNKKS 550
Query: 91 DAVKEENLKLKSENQVLGQYIENLMSASSVF 121
+ + ++ K+ + + + + I+ MSAS++F
Sbjct: 551 NVIDNKSGKVTAYDLLSNRVIKKPMSASALF 581
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 27.7 bits (60), Expect = 2.7
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 38 QLVQVSRPEVSAGSLLLPAP---QAEDHSSRILYPRPKSLLPKMMNADMDDLSARVDAVK 94
++ ++ P SA S+ P P QA + + + P K K + + + + D++K
Sbjct: 643 EIYEILSPSYSAASIG-PDPALSQAMVATKQAMSPEDKKRAVKYSMSHIAQIPVKHDSLK 701
Query: 95 EENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 130
EE +L Y+ N+ SS+ T D K+
Sbjct: 702 EEFAQLSCNLNQRLSYLANMGGPSSLGTTVDILQKK 737
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 27.7 bits (60), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 63 SSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENL 114
S R PRP+S P +L++ + VKE+ +L E L Q + L
Sbjct: 846 SRRPELPRPRSQAPPTGTRPSPELASEAEEVKEKVCRLNQEISRLNQEVSQL 897
>gi|169178850 PREDICTED: similar to coiled-coil domain containing 29
[Homo sapiens]
Length = 197
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 74 LLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQ 122
+L K + DDL A +AV + + L +NQV+ Q L+S V Q
Sbjct: 29 ILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQVIQQ---ELLSMKKVQQ 74
>gi|239747109 PREDICTED: hypothetical protein XP_002344496 [Homo
sapiens]
Length = 146
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 74 LLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQ 122
+L K + DDL A +AV + + L +NQV+ Q L+S V Q
Sbjct: 29 ILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQVIQQ---ELLSMKKVQQ 74
>gi|54234024 vacuolar protein sorting 39 [Homo sapiens]
Length = 875
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 60 EDHSSRILYPRPKSLLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 117
E H S++ + +LLP N ++D+ ++ V EEN + K NQVL +NL+ A
Sbjct: 765 ELHHSKLDTTKALNLLPA--NTQINDIRIFLEKVLEENAQKKRFNQVL----KNLLHA 816
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 27.7 bits (60), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 80 NADMDDLSARV------DAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTK 127
NAD+ D S + + LKL+ ENQ L I+ L AS V + + K
Sbjct: 442 NADLSDASRKSFVFELNECASSRILKLEKENQSLQSTIQGLRDASLVLEESGLK 495
>gi|149363632 coiled-coil domain containing 29 [Homo sapiens]
Length = 161
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 74 LLPKMMNADMDDLSARVDAVKEENLKLKSENQVLGQ 109
+L K + DDL+A+ +A+ + + L +NQVL Q
Sbjct: 29 ILIKKLKQKFDDLTAQKEALSSKCVNLAKDNQVLQQ 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,618,586
Number of Sequences: 37866
Number of extensions: 195208
Number of successful extensions: 817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 71
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.