Guide to the Human Genome
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Name: RUFY3 Sequence: fasta or formatted (620aa) NCBI GI: 82697315
Description:

RUN and FYVE domain containing 3 isoform 1

Referenced in:

Additional Interaction Domain Families
Zinc Finger Proteins

Other entries for this name:
alt prot [506aa] RUN and FYVE domain containing 3 isoform 3
alt prot [469aa] RUN and FYVE domain containing 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         36           2
 C cysteine            2.1         13           1
 D aspartate           5.5         34           2
 E glutamate          10.8         67           3
 F phenylalanine       1.9         12           2
 G glycine             4.4         27           1
 H histidine           1.8         11           1
 I isoleucine          3.4         21           2
 K lysine              9.0         56           2
 L leucine            13.7         85           3
 M methionine          4.2         26           2
 N asparagine          5.0         31           2
 P proline             3.9         24           2
 Q glutamine           6.5         40           2
 R arginine            5.0         31           2
 S serine              6.8         42           2
 T threonine           4.5         28           2
 V valine              3.9         24           2
 W tryptophan          0.5          3           1
 Y tyrosine            1.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RUN and FYVE domain containing 3 isoform 1 
RUFY3                 0.705   RUN and FYVE domain containing 3 isoform 2 
RUFY3                 0.602   RUN and FYVE domain containing 3 isoform 3 
RUFY2                 0.459   RUN and FYVE domain-containing 2 isoform a 
RUFY1                 0.443   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.443   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.443   RUN and FYVE domain-containing 1 isoform a 
RUFY2                 0.329   RUN and FYVE domain-containing 2 isoform b 
RUNDC3B               0.079   RUN domain containing 3B isoform c 
RUNDC3B               0.078   RUN domain containing 3B isoform b 
RUNDC3A               0.073   RUN domain containing 3A isoform 3 
RUNDC3A               0.069   RUN domain containing 3A isoform 1 
RUNDC3A               0.069   RUN domain containing 3A isoform 2 
RUNDC3B               0.068   RUN domain containing 3B isoform a 
FYCO1                 0.051   FYVE and coiled-coil domain containing 1 
MYH9                  0.044   myosin, heavy polypeptide 9, non-muscle 
CGNL1                 0.042   cingulin-like 1 
MYH13                 0.041   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EEA1                  0.039   early endosome antigen 1, 162kD 
MYH7                  0.038   myosin, heavy chain 7, cardiac muscle, beta 
AKAP9                 0.038   A-kinase anchor protein 9 isoform 3 
MYH10                 0.038   myosin, heavy polypeptide 10, non-muscle 
ERC2                  0.038   cytomatrix protein p110 
AKAP9                 0.038   A-kinase anchor protein 9 isoform 2 
LOC645202             0.037   PREDICTED: hypothetical protein LOC645202 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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