VPS39 32503

Name: VPS39	Sequence: fasta or formatted (875aa)		NCBI GI: 54234024
Description: vacuolar protein sorting 39		Referenced in: ER, Golgi, and the Secretory Pathway TGF-beta Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 43 2 C cysteine 2.3 20 1 D aspartate 4.7 41 2 E glutamate 8.0 70 3 F phenylalanine 4.0 35 1 G glycine 4.5 39 2 H histidine 4.0 35 2 I isoleucine 5.8 51 2 K lysine 8.1 71 3 L leucine 14.1 123 3 M methionine 1.7 15 1 N asparagine 3.8 33 2 P proline 4.8 42 2 Q glutamine 5.6 49 3 R arginine 3.9 34 1 S serine 4.7 41 2 T threonine 4.1 36 2 V valine 6.6 58 3 W tryptophan 0.9 8 1 Y tyrosine 3.5 31 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 39 TGFBRAP1 0.107 transforming growth factor, beta receptor associate... TGFBRAP1 0.107 transforming growth factor, beta receptor associated... CDC42BPB 0.013 CDC42-binding protein kinase beta TNIK 0.013 TRAF2 and NCK interacting kinase isoform 8 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 7 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 6 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 5 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 4 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 3 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 2 TNIK 0.013 TRAF2 and NCK interacting kinase isoform 1 MINK1 0.011 misshapen/NIK-related kinase isoform 4 MINK1 0.011 misshapen/NIK-related kinase isoform 2 MINK1 0.011 misshapen/NIK-related kinase isoform 3 MINK1 0.011 misshapen/NIK-related kinase isoform 1 MAP4K4 0.011 mitogen-activated protein kinase kinase kinase kinas... MAP4K4 0.011 mitogen-activated protein kinase kinase kinase kinas... MAP4K4 0.010 mitogen-activated protein kinase kinase kinase kinas... C18orf34 0.008 hypothetical protein LOC374864 isoform 1 C18orf34 0.008 hypothetical protein LOC374864 isoform 2 CDC42BPA 0.008 CDC42-binding protein kinase alpha isoform B CDC42BPA 0.008 CDC42-binding protein kinase alpha isoform A DST 0.006 dystonin isoform 1eB precursor TRAF5 0.006 TNF receptor-associated factor 5 TRAF5 0.006 TNF receptor-associated factor 5 TRAF5 0.006 TNF receptor-associated factor 5 TIAM2 0.005 T-cell lymphoma invasion and metastasis 2 isoform a ... SHOC2 0.004 soc-2 suppressor of clear homolog SH2D4B 0.003 SH2 domain containing 4B isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.