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Search of human proteins with 226342992
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens] 404 e-113
gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens] 270 5e-73
gi|226342994 SLAM family member 9 isoform 3 [Homo sapiens] 181 4e-46
gi|75991709 lymphocyte antigen 9 isoform b [Homo sapiens] 73 1e-13
gi|4502687 CD84 molecule [Homo sapiens] 73 1e-13
gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens] 71 5e-13
gi|16418407 activating NK receptor precursor [Homo sapiens] 66 2e-11
gi|19923572 SLAM family member 7 [Homo sapiens] 50 1e-06
gi|52317156 carcinoembryonic antigen-related cell adhesion molec... 37 0.011
gi|148612793 carcinoembryonic antigen-related cell adhesion mole... 37 0.011
gi|91208433 CD86 antigen isoform 2 precursor [Homo sapiens] 32 0.27
gi|91208430 CD86 antigen isoform 1 [Homo sapiens] 32 0.27
gi|146229333 hypothetical protein LOC284021 [Homo sapiens] 32 0.27
gi|21389351 sideroflexin 5 [Homo sapiens] 30 1.3
gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens] 30 1.8
gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens] 30 1.8
gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapi... 29 2.3
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 29 2.3
gi|208610002 atlastin GTPase 2 isoform 2 [Homo sapiens] 28 3.9
gi|208610000 atlastin GTPase 2 isoform 1 [Homo sapiens] 28 3.9
gi|5453870 platelet-derived growth factor receptor alpha precurs... 28 5.1
gi|24430212 interleukin 23 receptor precursor [Homo sapiens] 28 5.1
gi|221139921 EF-hand calcium binding domain 8 [Homo sapiens] 28 6.7
gi|45593136 LISCH protein isoform 3 [Homo sapiens] 28 6.7
gi|45545424 LISCH protein isoform 2 [Homo sapiens] 28 6.7
gi|45505163 LISCH protein isoform 1 [Homo sapiens] 28 6.7
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho... 28 6.7
gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens] 27 8.7
gi|22027648 lipin 1 [Homo sapiens] 27 8.7
>gi|226342992 SLAM family member 9 isoform 2 [Homo sapiens]
Length = 198
Score = 404 bits (1039), Expect = e-113
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS
Sbjct: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS 120
LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS
Sbjct: 61 LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS 120
Query: 121 TMQQYNICVYHPNYASEKPSTAFCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKL 180
TMQQYNICVYHPNYASEKPSTAFCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKL
Sbjct: 121 TMQQYNICVYHPNYASEKPSTAFCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKL 180
Query: 181 MRNRMKLRKEAKPGSSPA 198
MRNRMKLRKEAKPGSSPA
Sbjct: 181 MRNRMKLRKEAKPGSSPA 198
>gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens]
Length = 289
Score = 270 bits (691), Expect = 5e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS
Sbjct: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS 120
LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS
Sbjct: 61 LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS 120
Query: 121 TMQQYNICVY 130
TMQQYNICVY
Sbjct: 121 TMQQYNICVY 130
Score = 139 bits (351), Expect = 1e-33
Identities = 80/116 (68%), Positives = 88/116 (75%), Gaps = 7/116 (6%)
Query: 90 DPSYSLH---ISNLSWE--DSGL-YQAQVNLRTSQISTMQQYNICVY-HPNYASEKPSTA 142
D +Y+ H + + SW DS L Y + N S +S+ + Y PNYASEKPSTA
Sbjct: 174 DSTYTFHEGPVLSTSWRPGDSALSYTCRANNPISNVSSCPIPDGPFYADPNYASEKPSTA 233
Query: 143 FCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKLMRNRMKLRKEAKPGSSPA 198
FCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKLMRNRMKLRKEAKPGSSPA
Sbjct: 234 FCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKLMRNRMKLRKEAKPGSSPA 289
>gi|226342994 SLAM family member 9 isoform 3 [Homo sapiens]
Length = 111
Score = 181 bits (459), Expect = 4e-46
Identities = 85/86 (98%), Positives = 86/86 (100%)
Query: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS
Sbjct: 1 MCAFPWLLLLLLLQEGSQRRLWRWCGSEEVVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQV 86
LATVVPGKEGHPATIMVTNPHYQGQ+
Sbjct: 61 LATVVPGKEGHPATIMVTNPHYQGQI 86
>gi|75991709 lymphocyte antigen 9 isoform b [Homo sapiens]
Length = 193
Score = 73.2 bits (178), Expect = 1e-13
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 30 VVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQVSFL 89
V +L S++LPL I D E+EN+IW K+ KE TIMV + Y G++
Sbjct: 55 VSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKEN--VTIMVKS--YLGRLDIT 110
Query: 90 DPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVYHP 132
SYSL ISNL+ D+G Y+AQ+N R +++T +++ + VY P
Sbjct: 111 KWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVYAP 153
>gi|4502687 CD84 molecule [Homo sapiens]
Length = 328
Score = 73.2 bits (178), Expect = 1e-13
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 6 WLLLLLLLQEGSQRRLWRWCGSEE-----VVAVLQESISLPLEIPPDEEVENIIWSSHKS 60
W+LLL L + W ++ V +L ES++ P+ I +V+ I W+S S
Sbjct: 7 WILLLCL-------QTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTS 59
Query: 61 LATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQIS 120
+A V PG + VT+ +Y ++ L P+Y+L IS+L ED+G Y+A +N + +
Sbjct: 60 VAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYT 119
Query: 121 TMQQYNICVY 130
T ++YN+ +Y
Sbjct: 120 TTKRYNLQIY 129
>gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens]
Length = 655
Score = 71.2 bits (173), Expect = 5e-13
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 30 VVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQVSFL 89
V +L S++LPL I D E+EN+IW K+ KE TIMV + Y G++
Sbjct: 55 VSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKEN--VTIMVKS--YLGRLDIT 110
Query: 90 DPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVY 130
SYSL ISNL+ D+G Y+AQ+N R +++T +++ + VY
Sbjct: 111 KWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVY 151
Score = 52.0 bits (123), Expect = 3e-07
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 28 EEVVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQVS 87
E VV VL E ++LPL +P + E ++W + S+ + + ++ + Y+ +V
Sbjct: 255 ETVVGVLGEPVTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPLIKSRDPYKNRVW 314
Query: 88 FLDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVY 130
SL IS L ED+G Y A V S +++M + +Y
Sbjct: 315 VSSQDCSLKISQLKIEDAGPYHAYVCSEASSVTSMTHVTLLIY 357
>gi|16418407 activating NK receptor precursor [Homo sapiens]
Length = 331
Score = 65.9 bits (159), Expect = 2e-11
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 30 VVAVLQESISLPLEIPPDEEVENIIW-SSHKSLATVVPGKEGHPATIMVTNPHYQGQVSF 88
V +L ES++LPLE P E+V I W + SLA +VP + P I VTNP +++F
Sbjct: 30 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSP-EIHVTNPKQGKRLNF 88
Query: 89 LDPSYSLHISNLSWEDSGLYQAQVNLRTS 117
SYSL +SNL ED+G Y+AQ++ +TS
Sbjct: 89 TQ-SYSLQLSNLKMEDTGSYRAQISTKTS 116
>gi|19923572 SLAM family member 7 [Homo sapiens]
Length = 335
Score = 50.1 bits (118), Expect = 1e-06
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 21 LWRWCGS------EEVVAVLQESISLPLEIPPDEEVENIIWSSHKS-LATVVPGKEGHPA 73
LW+ GS +E+V + +++ PL+ ++V++I+W+ + + L T+ P EG
Sbjct: 14 LWQLTGSAASGPVKELVGSVGGAVTFPLKSKV-KQVDSIVWTFNTTPLVTIQP--EG--G 68
Query: 74 TIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVY 130
TI+VT + +V F D YSL +S L DSG+Y + + Q + Q+Y + VY
Sbjct: 69 TIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVLHVY 125
>gi|52317156 carcinoembryonic antigen-related cell adhesion molecule
isoform 2 [Homo sapiens]
Length = 292
Score = 37.0 bits (84), Expect = 0.011
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 75 IMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQI 119
+ P Y G+ + + PS LH N++ ED+G Y QV R SQI
Sbjct: 88 VRTPGPAYSGRET-ISPSGDLHFQNVTLEDTGYYNLQVTYRNSQI 131
>gi|148612793 carcinoembryonic antigen-related cell adhesion
molecule isoform 1 [Homo sapiens]
Length = 293
Score = 37.0 bits (84), Expect = 0.011
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 75 IMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQI 119
+ P Y G+ + + PS LH N++ ED+G Y QV R SQI
Sbjct: 88 VRTPGPAYSGRET-ISPSGDLHFQNVTLEDTGYYNLQVTYRNSQI 131
>gi|91208433 CD86 antigen isoform 2 precursor [Homo sapiens]
Length = 323
Score = 32.3 bits (72), Expect = 0.27
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 29 EVVAVLQESISLPLEIPPDEEVEN----IIWSSHKSLAT--VVPGKEGHPATIMVTNPHY 82
++ A E+ LP + + + W ++L V GKE + + Y
Sbjct: 21 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSV----HSKY 76
Query: 83 QGQVSFLDPSYSLHISNLSWEDSGLYQAQVN 113
G+ SF S++L + NL +D GLYQ ++
Sbjct: 77 MGRTSFDSDSWTLRLHNLQIKDKGLYQCIIH 107
>gi|91208430 CD86 antigen isoform 1 [Homo sapiens]
Length = 329
Score = 32.3 bits (72), Expect = 0.27
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 29 EVVAVLQESISLPLEIPPDEEVEN----IIWSSHKSLAT--VVPGKEGHPATIMVTNPHY 82
++ A E+ LP + + + W ++L V GKE + + Y
Sbjct: 27 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSV----HSKY 82
Query: 83 QGQVSFLDPSYSLHISNLSWEDSGLYQAQVN 113
G+ SF S++L + NL +D GLYQ ++
Sbjct: 83 MGRTSFDSDSWTLRLHNLQIKDKGLYQCIIH 113
>gi|146229333 hypothetical protein LOC284021 [Homo sapiens]
Length = 343
Score = 32.3 bits (72), Expect = 0.27
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 132 PNYASEK-----PSTA-----FCL--LAKGLLIFLLLVILAMGLWVIRVQKRHKMPR 176
PNYA+ PST FCL L GLL+ L+++IL + WV+ K K R
Sbjct: 203 PNYATYSHPVTMPSTGGDSCPFCLKLLLPGLLLLLVVIILILAFWVLPKYKTRKAMR 259
>gi|21389351 sideroflexin 5 [Homo sapiens]
Length = 340
Score = 30.0 bits (66), Expect = 1.3
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 123 QQYNICVYHPNYASEKPSTAFCLLAKGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKLMR 182
Q +N CV + N + KPS A + L + V +A+GL V+ VQK +K +L+
Sbjct: 141 QSHNACVNYANRNATKPSPASKFIQGYLGAVISAVSIAVGLNVL-VQKANKFTPATRLLI 199
Query: 183 NR 184
R
Sbjct: 200 QR 201
>gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens]
Length = 450
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 76 MVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLR-TSQISTMQQYNICVYHP 132
+V + YQ + + + P+ SL I+ L + D G Y +VN++ +S Q+ + V P
Sbjct: 76 VVPDLEYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGTLSASQKIQVTVDDP 133
>gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens]
Length = 462
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 76 MVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLR-TSQISTMQQYNICVYHP 132
+V + YQ + + + P+ SL I+ L + D G Y +VN++ +S Q+ + V P
Sbjct: 88 VVPDLEYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGTLSASQKIQVTVDDP 145
>gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapiens]
Length = 1963
Score = 29.3 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 48 EEVENIIWSSHKSLATVVPGKEGHPATIMVTNP 80
E E++ WS SL V EG PAT+ ++ P
Sbjct: 1380 EAAEHLGWSFENSLKDFVRMDEGEPATVTISTP 1412
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 29.3 bits (64), Expect = 2.3
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 39 SLPLEIPPDEEVENIIWSSHKSLATVVPGKEGH-----PATIMVTNPHYQGQVSFLDPSY 93
+LP EI D V S+ T VP +EGH P I +T V DP
Sbjct: 1021 ALPKEICSDFTV---------SVTTPVPKQEGHLDSESPTNIPLTKQGGSRDVQGPDPVC 1071
Query: 94 SLHISNLSWEDSGL 107
S I LSW S L
Sbjct: 1072 SQPIQPLSWHGSSL 1085
>gi|208610002 atlastin GTPase 2 isoform 2 [Homo sapiens]
Length = 583
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 48 EEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNL 100
EE++N+ H + + HP + TNP + G++ +D + + NL
Sbjct: 275 EELQNVRKHIHNCFSNLGCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNL 327
>gi|208610000 atlastin GTPase 2 isoform 1 [Homo sapiens]
Length = 579
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 48 EEVENIIWSSHKSLATVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNL 100
EE++N+ H + + HP + TNP + G++ +D + + NL
Sbjct: 275 EELQNVRKHIHNCFSNLGCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNL 327
>gi|5453870 platelet-derived growth factor receptor alpha precursor
[Homo sapiens]
Length = 1089
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 93 YSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVYHPNYASEKPS 140
Y+L + + +DSG Y+ T ++ M++ I V+ + KP+
Sbjct: 273 YTLTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPT 320
>gi|24430212 interleukin 23 receptor precursor [Homo sapiens]
Length = 629
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 84 GQVSFLDPSYSLHISNLSWEDSGLY--QAQVNLRTSQISTMQQYNICVYHPN 133
G+++++D Y +H+ +L E+ Y + +N+ T + ++Y + V N
Sbjct: 149 GKLTYIDTKYVVHVKSLETEEEQQYLTSSYINISTDSLQGGKKYLVWVQAAN 200
>gi|221139921 EF-hand calcium binding domain 8 [Homo sapiens]
Length = 1288
Score = 27.7 bits (60), Expect = 6.7
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 87 SFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVYHPNYASEKPSTAFCLL 146
S L SY L + +W + + Q+N+ S + + + P AS+KP + L
Sbjct: 310 SALHRSYRLKALHPNWCEQVKFIPQMNVVVSCSAIEKSSLVLTILPAKASKKPRLSVLRL 369
Query: 147 AKGLLIF 153
KG+L F
Sbjct: 370 RKGILCF 376
>gi|45593136 LISCH protein isoform 3 [Homo sapiens]
Length = 581
Score = 27.7 bits (60), Expect = 6.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 64 VVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQV 112
VV K+G+ T+ +YQG+ + + L +W DSG+Y V
Sbjct: 175 VVATKQGNAVTL---GDYYQGRRITITGNADLTFDQTAWGDSGVYYCSV 220
>gi|45545424 LISCH protein isoform 2 [Homo sapiens]
Length = 649
Score = 27.7 bits (60), Expect = 6.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 64 VVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQV 112
VV K+G+ T+ +YQG+ + + L +W DSG+Y V
Sbjct: 175 VVATKQGNAVTL---GDYYQGRRITITGNADLTFDQTAWGDSGVYYCSV 220
>gi|45505163 LISCH protein isoform 1 [Homo sapiens]
Length = 630
Score = 27.7 bits (60), Expect = 6.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 64 VVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQV 112
VV K+G+ T+ +YQG+ + + L +W DSG+Y V
Sbjct: 175 VVATKQGNAVTL---GDYYQGRRITITGNADLTFDQTAWGDSGVYYCSV 220
>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
sapiens]
Length = 639
Score = 27.7 bits (60), Expect = 6.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 64 VVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLY 108
VV K+G T+ Y+G+ + L I L W DSGLY
Sbjct: 102 VVASKQGSTVTL---GDFYRGREITIVHDADLQIGKLMWGDSGLY 143
>gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]
Length = 685
Score = 27.3 bits (59), Expect = 8.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 148 KGLLIFLLLVILAMGLWVIRVQKRHKMPRMKKLMRN 183
K ++ + +VI G W +Q R+ MKK+M++
Sbjct: 212 KDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKD 247
>gi|22027648 lipin 1 [Homo sapiens]
Length = 890
Score = 27.3 bits (59), Expect = 8.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 27 SEEVVAVLQESISLPLEIPPDEEVENIIWSSHKSLATVVPGKEGHP 72
S+E + +L+ S +LP +IPP ++ I + SLA + P +P
Sbjct: 188 SDEAMELLESSRTLPNDIPP---FQDDIPEENLSLAVIYPQSASYP 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,118,459
Number of Sequences: 37866
Number of extensions: 337778
Number of successful extensions: 1095
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 34
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.