Guide to the Human Genome
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Name: C17orf60 Sequence: fasta or formatted (343aa) NCBI GI: 146229333
Description:

hypothetical protein LOC284021

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         20           1
 C cysteine            3.5         12           1
 D aspartate           3.5         12           1
 E glutamate           7.3         25           4
 F phenylalanine       4.4         15           2
 G glycine             4.1         14           2
 H histidine           2.6          9           1
 I isoleucine          4.7         16           2
 K lysine              7.0         24           2
 L leucine             8.7         30           5
 M methionine          2.3          8           1
 N asparagine          5.0         17           2
 P proline             6.1         21           1
 Q glutamine           3.2         11           1
 R arginine            4.4         15           2
 S serine              9.0         31           2
 T threonine           6.4         22           1
 V valine              7.0         24           2
 W tryptophan          0.9          3           1
 Y tyrosine            4.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284021 
FCRL3                 0.063   Fc receptor-like 3 precursor 
FCRL5                 0.059   Fc receptor-like 5 
FCRL2                 0.050   Fc receptor-like 2 precursor 
PECAM1                0.046   platelet/endothelial cell adhesion molecule 
FCRL1                 0.037   Fc receptor-like 1 isoform 2 precursor 
FCRL1                 0.034   Fc receptor-like 1 isoform 3 precursor 
FCRL1                 0.034   Fc receptor-like 1 isoform 1 precursor 
F11R                  0.022   F11 receptor precursor 
CD22                  0.018   CD22 molecule 
SIGLEC1               0.018   sialoadhesin precursor 
SLAMF9                0.016   SLAM family member 9 isoform 1 
HMCN1                 0.016   hemicentin 1 
OPCML                 0.015   opioid binding protein/cell adhesion molecule-like i...
MAG                   0.013   myelin associated glycoprotein isoform a precursor [...
MAG                   0.013   myelin associated glycoprotein isoform b precursor [...
CILP                  0.013   cartilage intermediate layer protein 
HEPACAM               0.013   hepatocyte cell adhesion molecule 
TTN                   0.012   titin isoform N2-A 
SLAMF9                0.010   SLAM family member 9 isoform 2 
LSAMP                 0.010   limbic system-associated membrane protein 
FCRLB                 0.010   Fc receptor-like B 
PSG8                  0.010   pregnancy specific beta-1-glycoprotein 8 isoform c ...
NTM                   0.009   neurotrimin isoform 2 
PSG8                  0.009   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.009   pregnancy specific beta-1-glycoprotein 8 isoform a [...
NTM                   0.009   neurotrimin isoform 4 
NTM                   0.009   neurotrimin isoform 3 
OPCML                 0.009   opioid binding protein/cell adhesion molecule-like is...
CEACAM8               0.009   carcinoembryonic antigen-related cell adhesion molec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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