Search of human proteins with 22538470

Search of human proteins with 22538470

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22538470 eomesodermin [Homo sapiens]
         (686 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22538470 eomesodermin [Homo sapiens]                              1418   0.0  
gi|5730081 T-box, brain, 1 [Homo sapiens]                             521   e-148
gi|7019549 T-box 21 [Homo sapiens]                                    341   1e-93
gi|18129690 T-box 4 [Homo sapiens]                                    194   2e-49
gi|197333868 T-box 2 [Homo sapiens]                                   194   2e-49
gi|18201894 T-box 5 isoform 3 [Homo sapiens]                          192   1e-48
gi|18201892 T-box 5 isoform 1 [Homo sapiens]                          192   1e-48
gi|31652232 T-box 5 isoform 1 [Homo sapiens]                          192   1e-48
gi|18201896 T-box 5 isoform 2 [Homo sapiens]                          191   3e-48
gi|5174711 T-box 1 isoform B [Homo sapiens]                           184   2e-46
gi|18104952 T-box 1 isoform C [Homo sapiens]                          184   2e-46
gi|18104950 T-box 1 isoform A [Homo sapiens]                          184   2e-46
gi|122937456 T-box 18 [Homo sapiens]                                  181   3e-45
gi|47419905 T-box 3 protein isoform 1 [Homo sapiens]                  179   6e-45
gi|122937388 MAX gene associated [Homo sapiens]                       177   4e-44
gi|47419907 T-box 3 protein isoform 2 [Homo sapiens]                  174   2e-43
gi|158187509 T-box 22 isoform 1 [Homo sapiens]                        174   2e-43
gi|18375603 T-box 22 isoform 1 [Homo sapiens]                         174   2e-43
gi|4507339 transcription factor T [Homo sapiens]                      172   1e-42
gi|4827024 T-box 19 [Homo sapiens]                                    171   2e-42
gi|117676399 T-box transcription factor TBX20 [Homo sapiens]          171   2e-42
gi|18201900 T-box 6 [Homo sapiens]                                    171   2e-42
gi|55770860 T-box 15 [Homo sapiens]                                   169   1e-41
gi|32567784 T-box 10 [Homo sapiens]                                   168   2e-41
gi|158187511 T-box 22 isoform 2 [Homo sapiens]                        142   1e-33
gi|122937424 one cut homeobox 3 [Homo sapiens]                         65   2e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    62   1e-09
gi|153792074 proline rich 12 [Homo sapiens]                            61   4e-09
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     59   1e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      59   1e-08

>gi|22538470 eomesodermin [Homo sapiens]
          Length = 686

 Score = 1418 bits (3670), Expect = 0.0
 Identities = 686/686 (100%), Positives = 686/686 (100%)

Query: 1   MQLGEQLLVSSVNLPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLS 60
           MQLGEQLLVSSVNLPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLS
Sbjct: 1   MQLGEQLLVSSVNLPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLS 60

Query: 61  CEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAA 120
           CEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAA
Sbjct: 61  CEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAA 120

Query: 121 AAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAP 180
           AAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAP
Sbjct: 121 AAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAP 180

Query: 181 NGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLY 240
           NGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLY
Sbjct: 181 NGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLY 240

Query: 241 GPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFL 300
           GPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFL
Sbjct: 241 GPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFL 300

Query: 301 SFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPNTGS 360
           SFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPNTGS
Sbjct: 301 SFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPNTGS 360

Query: 361 HWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQ 420
           HWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQ
Sbjct: 361 HWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQ 420

Query: 421 TFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPF 480
           TFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPF
Sbjct: 421 TFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPF 480

Query: 481 VNTLPQARYYNGERTVPQTNGLLSPQQSEEVANPPQRWLVTPVQQPGTNKLDISSYESEY 540
           VNTLPQARYYNGERTVPQTNGLLSPQQSEEVANPPQRWLVTPVQQPGTNKLDISSYESEY
Sbjct: 481 VNTLPQARYYNGERTVPQTNGLLSPQQSEEVANPPQRWLVTPVQQPGTNKLDISSYESEY 540

Query: 541 TSSTLLPYGIKSLPLQTSHALGYYPDPTFPAMAGWGGRGSYQRKMAAGLPWTSRTSPTVF 600
           TSSTLLPYGIKSLPLQTSHALGYYPDPTFPAMAGWGGRGSYQRKMAAGLPWTSRTSPTVF
Sbjct: 541 TSSTLLPYGIKSLPLQTSHALGYYPDPTFPAMAGWGGRGSYQRKMAAGLPWTSRTSPTVF 600

Query: 601 SEDQLSKEKVKEEIGSSWIETPPSIKSLDSNDSGVYTSACKRRRLSPSNSSNENSPSIKC 660
           SEDQLSKEKVKEEIGSSWIETPPSIKSLDSNDSGVYTSACKRRRLSPSNSSNENSPSIKC
Sbjct: 601 SEDQLSKEKVKEEIGSSWIETPPSIKSLDSNDSGVYTSACKRRRLSPSNSSNENSPSIKC 660

Query: 661 EDINAEEYSKDTSKGMGGYYAFYTTP 686
           EDINAEEYSKDTSKGMGGYYAFYTTP
Sbjct: 661 EDINAEEYSKDTSKGMGGYYAFYTTP 686


>gi|5730081 T-box, brain, 1 [Homo sapiens]
          Length = 682

 Score =  521 bits (1343), Expect = e-148
 Identities = 306/622 (49%), Positives = 381/622 (61%), Gaps = 105/622 (16%)

Query: 133 RYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLP 192
           R+S D  +++RY L       S   AP ++FPY       HGP +PA     +  GS   
Sbjct: 94  RHSFDGSAADRYLLSQSSQPQSAATAPSAMFPYPGQ----HGPAHPA-----FSIGS--- 141

Query: 193 PGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYS-QGAPLYGPYPGAAAAGS 251
           P  + A         +       S  G  + G   P  Y +S QGAP Y        + +
Sbjct: 142 PSRYMAHHPVITNGAYNSLLSNSSPQGYPTAGYPYPQQYGHSYQGAPFY------QFSST 195

Query: 252 CGGLGGLGVPGSGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTA 311
             GL    VPG   +A VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNI+GL+PTA
Sbjct: 196 QPGL----VPG---KAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTA 248

Query: 312 HYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGK 371
           HYN+FV+V+LADPNHWRFQGGKWV CGKAD N+QGN++Y+HP+SPNTG+HWMRQEISFGK
Sbjct: 249 HYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGK 308

Query: 372 LKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIA 431
           LKLTNNKGA+NNN QM+VLQSLHKYQPRLH+VEV EDG ED ++P + QTFTF ETQFIA
Sbjct: 309 LKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQTFTFPETQFIA 368

Query: 432 VTAYQNTDITQLKIDHNPFAKGFRDNYDSSH------------------QIVPGGRYGVQ 473
           VTAYQNTDITQLKIDHNPFAKGFRDNYD+ +                  QIVPG RY + 
Sbjct: 369 VTAYQNTDITQLKIDHNPFAKGFRDNYDTIYTGCDMDRLTPSPNDSPRSQIVPGARYAMA 428

Query: 474 -SFFPEPFVNTLPQARYYNG---------ERTVPQTNGLLSPQQSEEVANP-PQRWLVTP 522
            SF  + FV+   +AR++ G         +R+VP TNGLLSPQQ+E+   P PQRW VT 
Sbjct: 429 GSFLQDQFVSNYAKARFHPGAGAGPGPGTDRSVPHTNGLLSPQQAEDPGAPSPQRWFVT- 487

Query: 523 VQQPGTNKLDI--SSYESEY----TSSTLLPY---GIKSLPLQ----TSHALGYYPDPTF 569
              P  N+LD   S+Y++       ++TLL Y   G+K+LPLQ    T   LGYY DP  
Sbjct: 488 ---PANNRLDFAASAYDTATDFAGNAATLLSYAAAGVKALPLQAAGCTGRPLGYYADP-- 542

Query: 570 PAMAGWGGRGSYQ--------------------RKMAAGLPWTSRTSPTVFSE------D 603
              +GWG R   Q                     +MA   P+    +  + +E       
Sbjct: 543 ---SGWGARSPPQYCGTKSGSVLPCWPNSAAAAARMAGANPYLGEEAEGLAAERSPLPPG 599

Query: 604 QLSKEKVKEEIGSSWIETPPSIKSLDSNDSGVYTSACKRRRLSPSNSS-NENSPSIKCED 662
                K K+   SSWIETP SIKS+DS+DSG+Y  A KRRR+SP+++  +E+S  +K E 
Sbjct: 600 AAEDAKPKDLSDSSWIETPSSIKSIDSSDSGIYEQA-KRRRISPADTPVSESSSPLKSEV 658

Query: 663 INAEEYSKDTSKGMGGYYAFYT 684
           +   +  K+ +K + GYY FY+
Sbjct: 659 LAQRDCEKNCAKDISGYYGFYS 680


>gi|7019549 T-box 21 [Homo sapiens]
          Length = 535

 Score =  341 bits (875), Expect = 1e-93
 Identities = 221/523 (42%), Positives = 280/523 (53%), Gaps = 54/523 (10%)

Query: 143 RYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCP 202
           RY+   PG Q ++          +   G   G  YP   GA  P     PP  F  A   
Sbjct: 34  RYFYPEPGAQDAD----------ERRGGGSLGSPYPG--GALVP----APPSRFLGAYAY 77

Query: 203 PGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
           P R Q     GAG      +   G      Y+   P  G YPG     +     GL V G
Sbjct: 78  PPRPQAAGFPGAGESFPPPADAEGYQPGEGYAAPDPRAGLYPGPREDYALPA--GLEVSG 135

Query: 263 SGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLA 322
              +  V L N  LW KF++HQTEMIITKQGRRMFPFLSF + GL PT+HY +FV+VVL 
Sbjct: 136 ---KLRVALNNHLLWSKFNQHQTEMIITKQGRRMFPFLSFTVAGLEPTSHYRMFVDVVLV 192

Query: 323 DPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANN 382
           D +HWR+Q GKWV CGKA+ +M GN++YVHP+SPNTG+HWMRQE+SFGKLKLTNNKGA+N
Sbjct: 193 DQHHWRYQSGKWVQCGKAEGSMPGNRLYVHPDSPNTGAHWMRQEVSFGKLKLTNNKGASN 252

Query: 383 NNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQ 442
           N TQMIVLQSLHKYQPRLHIVEV +   E     S T  FTF ETQFIAVTAYQN +ITQ
Sbjct: 253 NVTQMIVLQSLHKYQPRLHIVEVNDGEPEAACNASNTHIFTFQETQFIAVTAYQNAEITQ 312

Query: 443 LKIDHNPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPFVNTLPQARYYNGER-------- 494
           LKID+NPFAKGFR+N++S +         V +  P P     P  ++  G+         
Sbjct: 313 LKIDNNPFAKGFRENFESMYT-------SVDTSIPSP---PGPNCQFLGGDHYSPLLPNQ 362

Query: 495 -TVPQTNGLLSPQQSEEVANPPQRWLVTPVQQPGTNKLDISSYESEYTSSTLLPYGIKSL 553
             VP       P Q+++V  P   WL  P            SYE+E+ + ++ P  + S 
Sbjct: 363 YPVPSRFYPDLPGQAKDVV-PQAYWLGAPRDH---------SYEAEFRAVSMKPAFLPSA 412

Query: 554 PLQTSHALGYYPDPTFPAM-AGWGGRGSYQRKMAAGLPWTSRTSPTVFSEDQLSKEKVKE 612
           P  T   + YY      A  AGW     Y  KM     +    +  +      S+ +  E
Sbjct: 413 PGPT---MSYYRGQEVLAPGAGWPVAPQYPPKMGPASWFRPMRTLPMEPGPGGSEGRGPE 469

Query: 613 EIGSSWIETPPSIKSLDSNDSGVYTSACKRRRLSPSNSSNENS 655
           + G   + T  +    +S+DSG+     KRRR+SP  SS ++S
Sbjct: 470 DQGPPLVWTEIAPIRPESSDSGLGEGDSKRRRVSPYPSSGDSS 512


>gi|18129690 T-box 4 [Homo sapiens]
          Length = 545

 Score =  194 bits (494), Expect = 2e-49
 Identities = 111/256 (43%), Positives = 148/256 (57%), Gaps = 14/256 (5%)

Query: 209 GPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPGSGFRAH 268
           GP  G  S A         PG    + G+P   P PGA    +      +          
Sbjct: 18  GPALGEASAANAPEPALAAPGLSGAALGSP---PGPGADVVAAAAAEQTIE------NIK 68

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V L  + LW KFH   TEMIITK GRRMFP     + G+NP   Y + +++V AD + ++
Sbjct: 69  VGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRYK 128

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           F   KW+  GKA+  M G ++YVHP+SP TG+HWMRQ +SF KLKLTNN   + +    I
Sbjct: 129 FCDNKWMVAGKAEPAMPG-RLYVHPDSPATGAHWMRQLVSFQKLKLTNN---HLDPFGHI 184

Query: 389 VLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHN 448
           +L S+HKYQPRLHIV+  E+     ++ +   T  F ET FI+VT+YQN  ITQLKI++N
Sbjct: 185 ILNSMHKYQPRLHIVKADENNAFG-SKNTAFCTHVFPETSFISVTSYQNHKITQLKIENN 243

Query: 449 PFAKGFRDNYDSSHQI 464
           PFAKGFR + DS  ++
Sbjct: 244 PFAKGFRGSDDSDLRV 259


>gi|197333868 T-box 2 [Homo sapiens]
          Length = 712

 Score =  194 bits (493), Expect = 2e-49
 Identities = 136/373 (36%), Positives = 185/373 (49%), Gaps = 47/373 (12%)

Query: 164 PYQAAAGAPHGPVYPAPNGARYPYGSMLP---PGGFPAAVCPPG---RAQFGPGAGAGSG 217
           P  AA+   + P + AP  A +P  + L    P  FPA   PPG   +    PG    + 
Sbjct: 4   PALAASAMAYHPFH-APRPADFPMSAFLAAAQPSFFPALALPPGALAKPLPDPGLAGAAA 62

Query: 218 AGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLW 277
           A  ++      G +         GP+P AA   S   L          +  V L  + LW
Sbjct: 63  AAAAAAAAAEAGLH-----VSALGPHPPAAHLRSLKSLEPEDEVEDDPK--VTLEAKELW 115

Query: 278 LKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTC 337
            +FH+  TEM+ITK GRRMFP     ++GL+  A Y + +++V AD   ++F   +W+  
Sbjct: 116 DQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVA 175

Query: 338 GKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQ 397
           GKAD  M   +MY+HP+SP TG  WM + ++F KLKLTNN    +  T   +L S+HKYQ
Sbjct: 176 GKADPEMP-KRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFT---ILNSMHKYQ 231

Query: 398 PRLHIVEVTEDGVEDLNEPSKT-QTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
           PR HIV       + L  P  T +T+ F ET FIAVTAYQN  ITQLKID+NPFAKGFRD
Sbjct: 232 PRFHIVRAN----DILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRD 287

Query: 457 NYDSSHQIVPGGRYGVQSFFPEPFVNTLPQARYYNGERTVPQTNGLLSPQQSEEVANPPQ 516
             +   +              +    TLP  R Y  E   P+ +G  S   S    +PP 
Sbjct: 288 TGNGRRE--------------KRKQLTLPSLRLYE-EHCKPERDGAESDASS---CDPP- 328

Query: 517 RWLVTPVQQPGTN 529
                P ++P T+
Sbjct: 329 -----PAREPPTS 336



 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 67/229 (29%), Positives = 84/229 (36%), Gaps = 33/229 (14%)

Query: 37  PSAAPSPQKLDLDKASKKFSGSLSCEAVSG-EPAAASAGAPAAMLSDTDAGDAFASAAAV 95
           P AAPSP +L   +A +K     SC A S  EP   S     A L  + A D+ AS   +
Sbjct: 337 PGAAPSPLRLHRARAEEK-----SCAADSDPEPERLSEERAGAPLGRSPAPDS-ASPTRL 390

Query: 96  AKPG-------------PPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSSE 142
            +P              P +     P G   L    A A          A      L+  
Sbjct: 391 TEPERARERRSPERGKEPAESGGDGPFGLRSLEKERAEARRKDEGRKEAAEGKEQGLAPL 450

Query: 143 RYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCP 202
                S  P G+         P  A +   HG  +  P GA  P    L PG F     P
Sbjct: 451 VVQTDSASPLGA------GHLPGLAFSSHLHGQQFFGPLGAGQPL--FLHPGQFTMG--P 500

Query: 203 PGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGS 251
              +  G G    S AGG +GGGGGPGT   + G    G  P A+AA +
Sbjct: 501 GAFSAMGMGHLLASVAGGGNGGGGGPGT---AAGLDAGGLGPAASAAST 546



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 67  EPA-AASAGAPAAMLSDTDAGDAFASAAAVAKPG------PPDGRKGSPCGEEELPSAAA 119
           EPA AASA A     +   A    ++  A A+P        P G    P  +  L  AAA
Sbjct: 3   EPALAASAMAYHPFHAPRPADFPMSAFLAAAQPSFFPALALPPGALAKPLPDPGLAGAAA 62

Query: 120 AAAAAAAAAAA 130
           AAAAAAAAA A
Sbjct: 63  AAAAAAAAAEA 73


>gi|18201894 T-box 5 isoform 3 [Homo sapiens]
          Length = 468

 Score =  192 bits (487), Expect = 1e-48
 Identities = 127/327 (38%), Positives = 175/327 (53%), Gaps = 18/327 (5%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V+L  R LWLKFH   TEMIITK GRRMFP     + GLNP   Y + +++V AD + ++
Sbjct: 6   VFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYK 65

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           F   KW   GKA+  M G ++YVHP+SP TG+HWMRQ +SF KLKLTNN   + +    I
Sbjct: 66  FADNKWSVTGKAEPAMPG-RLYVHPDSPATGAHWMRQLVSFQKLKLTNN---HLDPFGHI 121

Query: 389 VLQSLHKYQPRLHIVEVTE-DGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDH 447
           +L S+HKYQPRLHIV+  E +G    N  +   T  F ET FIAVT+YQN  ITQLKI++
Sbjct: 122 ILNSMHKYQPRLHIVKADENNGFGSKN--TAFCTHVFPETAFIAVTSYQNHKITQLKIEN 179

Query: 448 NPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPFVN---TLPQARYYNGERTVPQTNGLLS 504
           NPFAKGFR + D     +   +       P   V        + + +  R +  ++ L S
Sbjct: 180 NPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQKVASNHSPFSSESRALSTSSNLGS 239

Query: 505 PQQSEEVANPPQRWLVT-----PVQQPGTNKLDISSYESEYTSSTLLPYGIKSLPLQTSH 559
             Q E   + P + L+      P+ Q  +     +  + E  S+T  PY    +    S 
Sbjct: 240 QYQCENGVSGPSQDLLPPPNPYPLPQEHSQIYHCTKRKEEECSTTDHPYKKPYMETSPSE 299

Query: 560 ALGYYPDPTFPAMAGWGGRGSYQRKMA 586
              +Y   ++P   G G   SY+ + A
Sbjct: 300 EDSFYRS-SYPQQQGLG--ASYRTESA 323


>gi|18201892 T-box 5 isoform 1 [Homo sapiens]
          Length = 518

 Score =  192 bits (487), Expect = 1e-48
 Identities = 127/327 (38%), Positives = 175/327 (53%), Gaps = 18/327 (5%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V+L  R LWLKFH   TEMIITK GRRMFP     + GLNP   Y + +++V AD + ++
Sbjct: 56  VFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYK 115

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           F   KW   GKA+  M G ++YVHP+SP TG+HWMRQ +SF KLKLTNN   + +    I
Sbjct: 116 FADNKWSVTGKAEPAMPG-RLYVHPDSPATGAHWMRQLVSFQKLKLTNN---HLDPFGHI 171

Query: 389 VLQSLHKYQPRLHIVEVTE-DGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDH 447
           +L S+HKYQPRLHIV+  E +G    N  +   T  F ET FIAVT+YQN  ITQLKI++
Sbjct: 172 ILNSMHKYQPRLHIVKADENNGFGSKN--TAFCTHVFPETAFIAVTSYQNHKITQLKIEN 229

Query: 448 NPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPFVN---TLPQARYYNGERTVPQTNGLLS 504
           NPFAKGFR + D     +   +       P   V        + + +  R +  ++ L S
Sbjct: 230 NPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQKVASNHSPFSSESRALSTSSNLGS 289

Query: 505 PQQSEEVANPPQRWLVT-----PVQQPGTNKLDISSYESEYTSSTLLPYGIKSLPLQTSH 559
             Q E   + P + L+      P+ Q  +     +  + E  S+T  PY    +    S 
Sbjct: 290 QYQCENGVSGPSQDLLPPPNPYPLPQEHSQIYHCTKRKEEECSTTDHPYKKPYMETSPSE 349

Query: 560 ALGYYPDPTFPAMAGWGGRGSYQRKMA 586
              +Y   ++P   G G   SY+ + A
Sbjct: 350 EDSFYRS-SYPQQQGLG--ASYRTESA 373


>gi|31652232 T-box 5 isoform 1 [Homo sapiens]
          Length = 518

 Score =  192 bits (487), Expect = 1e-48
 Identities = 127/327 (38%), Positives = 175/327 (53%), Gaps = 18/327 (5%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V+L  R LWLKFH   TEMIITK GRRMFP     + GLNP   Y + +++V AD + ++
Sbjct: 56  VFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYK 115

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           F   KW   GKA+  M G ++YVHP+SP TG+HWMRQ +SF KLKLTNN   + +    I
Sbjct: 116 FADNKWSVTGKAEPAMPG-RLYVHPDSPATGAHWMRQLVSFQKLKLTNN---HLDPFGHI 171

Query: 389 VLQSLHKYQPRLHIVEVTE-DGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDH 447
           +L S+HKYQPRLHIV+  E +G    N  +   T  F ET FIAVT+YQN  ITQLKI++
Sbjct: 172 ILNSMHKYQPRLHIVKADENNGFGSKN--TAFCTHVFPETAFIAVTSYQNHKITQLKIEN 229

Query: 448 NPFAKGFRDNYDSSHQIVPGGRYGVQSFFPEPFVN---TLPQARYYNGERTVPQTNGLLS 504
           NPFAKGFR + D     +   +       P   V        + + +  R +  ++ L S
Sbjct: 230 NPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQKVASNHSPFSSESRALSTSSNLGS 289

Query: 505 PQQSEEVANPPQRWLVT-----PVQQPGTNKLDISSYESEYTSSTLLPYGIKSLPLQTSH 559
             Q E   + P + L+      P+ Q  +     +  + E  S+T  PY    +    S 
Sbjct: 290 QYQCENGVSGPSQDLLPPPNPYPLPQEHSQIYHCTKRKEEECSTTDHPYKKPYMETSPSE 349

Query: 560 ALGYYPDPTFPAMAGWGGRGSYQRKMA 586
              +Y   ++P   G G   SY+ + A
Sbjct: 350 EDSFYRS-SYPQQQGLG--ASYRTESA 373


>gi|18201896 T-box 5 isoform 2 [Homo sapiens]
          Length = 349

 Score =  191 bits (484), Expect = 3e-48
 Identities = 103/192 (53%), Positives = 129/192 (67%), Gaps = 7/192 (3%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V+L  R LWLKFH   TEMIITK GRRMFP     + GLNP   Y + +++V AD + ++
Sbjct: 56  VFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYK 115

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           F   KW   GKA+  M G ++YVHP+SP TG+HWMRQ +SF KLKLTNN   + +    I
Sbjct: 116 FADNKWSVTGKAEPAMPG-RLYVHPDSPATGAHWMRQLVSFQKLKLTNN---HLDPFGHI 171

Query: 389 VLQSLHKYQPRLHIVEVTE-DGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDH 447
           +L S+HKYQPRLHIV+  E +G    N  +   T  F ET FIAVT+YQN  ITQLKI++
Sbjct: 172 ILNSMHKYQPRLHIVKADENNGFGSKN--TAFCTHVFPETAFIAVTSYQNHKITQLKIEN 229

Query: 448 NPFAKGFRDNYD 459
           NPFAKGFR + D
Sbjct: 230 NPFAKGFRGSDD 241


>gi|5174711 T-box 1 isoform B [Homo sapiens]
          Length = 372

 Score =  184 bits (467), Expect = 2e-46
 Identities = 117/297 (39%), Positives = 153/297 (51%), Gaps = 29/297 (9%)

Query: 163 FPYQAAAGA-PHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGS 221
           FP  A+ GA P+GP  P P   RY   +   PG  P    PP    F P AGA + A   
Sbjct: 27  FPGAASPGADPYGPREPPPPPPRYDPCAAAAPGA-PGPPPPPHAYPFAPAAGAATSAAAE 85

Query: 222 SGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFH 281
             G                   PGA+ A +           +G    V L  + LW +F+
Sbjct: 86  PEG-------------------PGASCAAAAKAPVKKNAKVAG--VSVQLEMKALWDEFN 124

Query: 282 RHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR--FQGGKWVTCGK 339
           +  TEMI+TK GRRMFP     + G++P A Y + ++ V  D   +R  F    W+  GK
Sbjct: 125 QLGTEMIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGK 184

Query: 340 ADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPR 399
           AD    G +++ HP+SP  G+ WM+Q +SF KLKLTNN   +N +   I+L S+H+YQPR
Sbjct: 185 ADPATPG-RVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGH---IILNSMHRYQPR 240

Query: 400 LHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
            H+V V      +       +TF F ET+F AVTAYQN  ITQLKI  NPFAKGFRD
Sbjct: 241 FHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD 297



 Score = 30.0 bits (66), Expect = 7.4
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 60  SCEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAA 119
           S  A  G P AAS GA      +           A A PG P    G P      P A A
Sbjct: 20  SLGAAGGFPGAASPGADPYGPREPPPPPPRYDPCAAAAPGAP----GPPPPPHAYPFAPA 75

Query: 120 AAAAAAAAA 128
           A AA +AAA
Sbjct: 76  AGAATSAAA 84


>gi|18104952 T-box 1 isoform C [Homo sapiens]
          Length = 495

 Score =  184 bits (467), Expect = 2e-46
 Identities = 117/297 (39%), Positives = 153/297 (51%), Gaps = 29/297 (9%)

Query: 163 FPYQAAAGA-PHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGS 221
           FP  A+ GA P+GP  P P   RY   +   PG  P    PP    F P AGA + A   
Sbjct: 27  FPGAASPGADPYGPREPPPPPPRYDPCAAAAPGA-PGPPPPPHAYPFAPAAGAATSAAAE 85

Query: 222 SGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFH 281
             G                   PGA+ A +           +G    V L  + LW +F+
Sbjct: 86  PEG-------------------PGASCAAAAKAPVKKNAKVAG--VSVQLEMKALWDEFN 124

Query: 282 RHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR--FQGGKWVTCGK 339
           +  TEMI+TK GRRMFP     + G++P A Y + ++ V  D   +R  F    W+  GK
Sbjct: 125 QLGTEMIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGK 184

Query: 340 ADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPR 399
           AD    G +++ HP+SP  G+ WM+Q +SF KLKLTNN   +N +   I+L S+H+YQPR
Sbjct: 185 ADPATPG-RVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGH---IILNSMHRYQPR 240

Query: 400 LHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
            H+V V      +       +TF F ET+F AVTAYQN  ITQLKI  NPFAKGFRD
Sbjct: 241 FHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD 297



 Score = 34.7 bits (78), Expect = 0.30
 Identities = 47/193 (24%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 41  PSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGP 100
           PS  + D  +A ++F       AV G+PA       A +LS +  G A  +   V  PG 
Sbjct: 331 PSGTEKDAAEARREFQRDAGGPAVLGDPAHPPQ-LLARVLSPSLPG-AGGAGGLVPLPGA 388

Query: 101 PDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPC 160
           P GR   P  E  L +  A+                + L    Y              P 
Sbjct: 389 PGGRPSPPNPELRLEAPGAS----------------EPLHHHPYKY------------PA 420

Query: 161 SLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGG 220
           + + +   A +   P YP P    + Y     P      V P   A     A A +    
Sbjct: 421 AAYDHYLGAKSRPAP-YPLPGLRGHGYHPHAHPHHHHHPVSPAAAAAAAAAAAAAAANMY 479

Query: 221 SSGGGGGPGTYQY 233
           SS G   PG+Y Y
Sbjct: 480 SSAGAAPPGSYDY 492



 Score = 31.2 bits (69), Expect = 3.3
 Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 34/137 (24%)

Query: 9   VSSVNLPGAHFYPLESARGGSGGSAG--HLPSAAPSPQKLDLDKASKKFSGSLSCEAVSG 66
           V S +LPGA         GG+GG       P   PSP   +L     +     + E +  
Sbjct: 368 VLSPSLPGA---------GGAGGLVPLPGAPGGRPSPPNPEL-----RLEAPGASEPLHH 413

Query: 67  EPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPS--------AA 118
            P       PAA      A D +  A +   P P  G +G        P         AA
Sbjct: 414 HPYKY----PAA------AYDHYLGAKSRPAPYPLPGLRGHGYHPHAHPHHHHHPVSPAA 463

Query: 119 AAAAAAAAAAAATARYS 135
           AAAAAAAAAAAA   YS
Sbjct: 464 AAAAAAAAAAAAANMYS 480



 Score = 30.0 bits (66), Expect = 7.4
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 60  SCEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAA 119
           S  A  G P AAS GA      +           A A PG P    G P      P A A
Sbjct: 20  SLGAAGGFPGAASPGADPYGPREPPPPPPRYDPCAAAAPGAP----GPPPPPHAYPFAPA 75

Query: 120 AAAAAAAAA 128
           A AA +AAA
Sbjct: 76  AGAATSAAA 84


>gi|18104950 T-box 1 isoform A [Homo sapiens]
          Length = 398

 Score =  184 bits (467), Expect = 2e-46
 Identities = 117/297 (39%), Positives = 153/297 (51%), Gaps = 29/297 (9%)

Query: 163 FPYQAAAGA-PHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGS 221
           FP  A+ GA P+GP  P P   RY   +   PG  P    PP    F P AGA + A   
Sbjct: 27  FPGAASPGADPYGPREPPPPPPRYDPCAAAAPGA-PGPPPPPHAYPFAPAAGAATSAAAE 85

Query: 222 SGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFH 281
             G                   PGA+ A +           +G    V L  + LW +F+
Sbjct: 86  PEG-------------------PGASCAAAAKAPVKKNAKVAG--VSVQLEMKALWDEFN 124

Query: 282 RHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR--FQGGKWVTCGK 339
           +  TEMI+TK GRRMFP     + G++P A Y + ++ V  D   +R  F    W+  GK
Sbjct: 125 QLGTEMIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGK 184

Query: 340 ADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPR 399
           AD    G +++ HP+SP  G+ WM+Q +SF KLKLTNN   +N +   I+L S+H+YQPR
Sbjct: 185 ADPATPG-RVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGH---IILNSMHRYQPR 240

Query: 400 LHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
            H+V V      +       +TF F ET+F AVTAYQN  ITQLKI  NPFAKGFRD
Sbjct: 241 FHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD 297



 Score = 30.0 bits (66), Expect = 7.4
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 60  SCEAVSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAA 119
           S  A  G P AAS GA      +           A A PG P    G P      P A A
Sbjct: 20  SLGAAGGFPGAASPGADPYGPREPPPPPPRYDPCAAAAPGAP----GPPPPPHAYPFAPA 75

Query: 120 AAAAAAAAA 128
           A AA +AAA
Sbjct: 76  AGAATSAAA 84


>gi|122937456 T-box 18 [Homo sapiens]
          Length = 607

 Score =  181 bits (458), Expect = 3e-45
 Identities = 117/270 (43%), Positives = 154/270 (57%), Gaps = 21/270 (7%)

Query: 198 AAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGS-CGGLG 256
           AA+ PP  A  GP   A SGA    G  GG         +PL  P  G +  GS    L 
Sbjct: 73  AALPPPAGATSGP---ARSGADLERGAAGGCEDGFQQGASPLASP--GGSPKGSPARSLA 127

Query: 257 GLGVPGSGFRA-HVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNV 315
             G P    +A  V L    LW +FH   TEMIITK GRRMFP +   I+GL+P   Y +
Sbjct: 128 RPGTPLPSPQAPRVDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYI 187

Query: 316 FVEVVLADPNHWRF--QGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLK 373
            +++V  D   +R+     KW+  G AD+ +   ++Y+HP+SP +G  WMRQ ISF KLK
Sbjct: 188 AMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPP-RVYIHPDSPASGETWMRQVISFDKLK 246

Query: 374 LTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNE----PSK--TQTFTFSET 427
           LTNN+  +  +   I+L S+HKYQPR+H++   +D  +DL+     PS    + F+F ET
Sbjct: 247 LTNNELDDQGH---IILHSMHKYQPRVHVIR--KDCGDDLSPIKPVPSGEGVKAFSFPET 301

Query: 428 QFIAVTAYQNTDITQLKIDHNPFAKGFRDN 457
            F  VTAYQN  IT+LKID NPFAKGFRD+
Sbjct: 302 VFTTVTAYQNQQITRLKIDRNPFAKGFRDS 331


>gi|47419905 T-box 3 protein isoform 1 [Homo sapiens]
          Length = 723

 Score =  179 bits (455), Expect = 6e-45
 Identities = 93/189 (49%), Positives = 123/189 (65%), Gaps = 9/189 (4%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V+L  + LW +FH+  TEM+ITK GRRMFP      +GL+  A Y + ++++ AD   ++
Sbjct: 105 VHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYK 164

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           F   +W+  GKAD  M   +MY+HP+SP TG  WM + ++F KLKLTNN    +  T   
Sbjct: 165 FHNSRWMVAGKADPEMP-KRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFT--- 220

Query: 389 VLQSLHKYQPRLHIVEVTEDGVEDLNEPSKT-QTFTFSETQFIAVTAYQNTDITQLKIDH 447
           +L S+HKYQPR HIV       + L  P  T +T+ F ET+FIAVTAYQN  ITQLKID+
Sbjct: 221 ILNSMHKYQPRFHIVRAN----DILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDN 276

Query: 448 NPFAKGFRD 456
           NPFAKGFRD
Sbjct: 277 NPFAKGFRD 285



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 22  LESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLS 81
           L  ++   GG+   + +A   P    +  AS   SG  S    S   A   +GA AA L 
Sbjct: 500 LHPSQFAMGGAFSSMAAAGMGPLLATVSGASTGVSGLDSTAMASAAAAQGLSGASAATLP 559

Query: 82  DTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSS 141
                   AS      P       GS         AAAAAA++AAA+++  R+   +L++
Sbjct: 560 FHLQQHVLASQGLAMSPF------GSLFPYPYTYMAAAAAASSAAASSSVHRHPFLNLNT 613

Query: 142 ER-------YYLQSPGPQGSELAAPCSLFPYQAAAGAP 172
            R       Y +  P P GS L    +  P  AAA  P
Sbjct: 614 MRPRLRYSPYSIPVPVPDGSSLLT--TALPSMAAAAGP 649


>gi|122937388 MAX gene associated [Homo sapiens]
          Length = 3114

 Score =  177 bits (448), Expect = 4e-44
 Identities = 93/191 (48%), Positives = 127/191 (66%), Gaps = 8/191 (4%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V L N  +W +F+   TEMI+TKQGRRMFP+  + I GL+    Y + +++   D + ++
Sbjct: 77  VTLDNNSMWNEFYHRSTEMILTKQGRRMFPYCRYWITGLDSNLKYILVMDISPVDNHRYK 136

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           + G  W   GKA+ ++ G ++++HPESP+TG +WM Q +SF KLKLTNN      +   I
Sbjct: 137 WNGRWWEPSGKAEPHVLG-RVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGH---I 192

Query: 389 VLQSLHKYQPRLHIVEVTEDGVE--DLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKID 446
           +L S+H+Y PRLH+V   E  VE   LN P    TFTF +T+F AVTAYQN  ITQLKID
Sbjct: 193 ILHSMHRYLPRLHLVPA-EKAVEVIQLNGPG-VHTFTFPQTEFFAVTAYQNIQITQLKID 250

Query: 447 HNPFAKGFRDN 457
           +NPFAKGFRD+
Sbjct: 251 YNPFAKGFRDD 261


>gi|47419907 T-box 3 protein isoform 2 [Homo sapiens]
          Length = 743

 Score =  174 bits (441), Expect = 2e-43
 Identities = 96/207 (46%), Positives = 126/207 (60%), Gaps = 25/207 (12%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           V+L  + LW +FH+  TEM+ITK GRRMFP      +GL+  A Y + ++++ AD   ++
Sbjct: 105 VHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYK 164

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNN----------- 377
           F   +W+  GKAD  M   +MY+HP+SP TG  WM + ++F KLKLTNN           
Sbjct: 165 FHNSRWMVAGKADPEMP-KRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAF 223

Query: 378 -------KGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKT-QTFTFSETQF 429
                  +G  +  TQ I L S+HKYQPR HIV       + L  P  T +T+ F ET+F
Sbjct: 224 PSDHATWQGNYSFGTQTI-LNSMHKYQPRFHIVRAN----DILKLPYSTFRTYLFPETEF 278

Query: 430 IAVTAYQNTDITQLKIDHNPFAKGFRD 456
           IAVTAYQN  ITQLKID+NPFAKGFRD
Sbjct: 279 IAVTAYQNDKITQLKIDNNPFAKGFRD 305



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 22  LESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLS 81
           L  ++   GG+   + +A   P    +  AS   SG  S    S   A   +GA AA L 
Sbjct: 520 LHPSQFAMGGAFSSMAAAGMGPLLATVSGASTGVSGLDSTAMASAAAAQGLSGASAATLP 579

Query: 82  DTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSS 141
                   AS      P       GS         AAAAAA++AAA+++  R+   +L++
Sbjct: 580 FHLQQHVLASQGLAMSPF------GSLFPYPYTYMAAAAAASSAAASSSVHRHPFLNLNT 633

Query: 142 ER-------YYLQSPGPQGSELAAPCSLFPYQAAAGAP 172
            R       Y +  P P GS L    +  P  AAA  P
Sbjct: 634 MRPRLRYSPYSIPVPVPDGSSLLT--TALPSMAAAAGP 669


>gi|158187509 T-box 22 isoform 1 [Homo sapiens]
          Length = 520

 Score =  174 bits (441), Expect = 2e-43
 Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 15/223 (6%)

Query: 244 PGAAAAGSCGGLGGLGVPGSGFRA---HVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFL 300
           P  +A+  CG   G G            + L    LW +FH   TEMIITK GRRMFP +
Sbjct: 66  PSTSASSGCGSDSGYGNSSESLEEKDIQMELQGSELWKRFHDIGTEMIITKAGRRMFPSV 125

Query: 301 SFNINGLNPTAHYNVFVEVVLADPNHWRF--QGGKWVTCGKADNNMQGNKMYVHPESPNT 358
              + GL+P   Y+V ++VV  D   +R+     +W+  G  D+     + YVHP+SP +
Sbjct: 126 RVKVKGLDPGKQYHVAIDVVPVDSKRYRYVYHSSQWMVAGNTDHLCIIPRFYVHPDSPCS 185

Query: 359 GSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNE--- 415
           G  WMRQ ISF ++KLTNN+  +  +   I+LQS+HKY+PR+H++E  +    DL++   
Sbjct: 186 GETWMRQIISFDRMKLTNNEMDDKGH---IILQSMHKYKPRVHVIE--QGSSVDLSQIQS 240

Query: 416 -PSK-TQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
            P++  +TF+F ET+F  VTAYQN  IT+LKI+ NPFAKGFRD
Sbjct: 241 LPTEGVKTFSFKETEFTTVTAYQNQQITKLKIERNPFAKGFRD 283


>gi|18375603 T-box 22 isoform 1 [Homo sapiens]
          Length = 520

 Score =  174 bits (441), Expect = 2e-43
 Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 15/223 (6%)

Query: 244 PGAAAAGSCGGLGGLGVPGSGFRA---HVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFL 300
           P  +A+  CG   G G            + L    LW +FH   TEMIITK GRRMFP +
Sbjct: 66  PSTSASSGCGSDSGYGNSSESLEEKDIQMELQGSELWKRFHDIGTEMIITKAGRRMFPSV 125

Query: 301 SFNINGLNPTAHYNVFVEVVLADPNHWRF--QGGKWVTCGKADNNMQGNKMYVHPESPNT 358
              + GL+P   Y+V ++VV  D   +R+     +W+  G  D+     + YVHP+SP +
Sbjct: 126 RVKVKGLDPGKQYHVAIDVVPVDSKRYRYVYHSSQWMVAGNTDHLCIIPRFYVHPDSPCS 185

Query: 359 GSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNE--- 415
           G  WMRQ ISF ++KLTNN+  +  +   I+LQS+HKY+PR+H++E  +    DL++   
Sbjct: 186 GETWMRQIISFDRMKLTNNEMDDKGH---IILQSMHKYKPRVHVIE--QGSSVDLSQIQS 240

Query: 416 -PSK-TQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
            P++  +TF+F ET+F  VTAYQN  IT+LKI+ NPFAKGFRD
Sbjct: 241 LPTEGVKTFSFKETEFTTVTAYQNQQITKLKIERNPFAKGFRD 283


>gi|4507339 transcription factor T [Homo sapiens]
          Length = 435

 Score =  172 bits (435), Expect = 1e-42
 Identities = 90/187 (48%), Positives = 118/187 (63%), Gaps = 14/187 (7%)

Query: 276 LWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWV 335
           LWL+F     EMI+TK GRRMFP L  N++GL+P A Y+  ++ V AD + W++  G+WV
Sbjct: 51  LWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWV 110

Query: 336 TCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHK 395
             GK +     + +Y+HP+SPN G+HWM+  +SF K+KLTN      N    I+L SLHK
Sbjct: 111 PGGKPEPQAP-SCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKL----NGGGQIMLNSLHK 165

Query: 396 YQPRLHIVEVTEDGVEDLNEPSKTQT-FTFSETQFIAVTAYQNTDITQLKIDHNPFAKGF 454
           Y+PR+HIV V          P +  T   F ETQFIAVTAYQN +IT LKI +NPFAK F
Sbjct: 166 YEPRIHIVRV--------GGPQRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAF 217

Query: 455 RDNYDSS 461
            D  + S
Sbjct: 218 LDAKERS 224


>gi|4827024 T-box 19 [Homo sapiens]
          Length = 448

 Score =  171 bits (434), Expect = 2e-42
 Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 12/194 (6%)

Query: 269 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR 328
           + L + PLW +F     EMI+TK GRRMFP L  ++ GL+P A Y++ ++ V  D + W+
Sbjct: 43  IILEDAPLWQRFKEVTNEMIVTKNGRRMFPVLKISVTGLDPNAMYSLLLDFVPTDSHRWK 102

Query: 329 FQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMI 388
           +  G+WV  GK + +   + +Y+HP+SPN G+HWM+  ISF K+KLTN      N    I
Sbjct: 103 YVNGEWVPAGKPEVSSH-SCVYIHPDSPNFGAHWMKAPISFSKVKLTNKL----NGGGQI 157

Query: 389 VLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHN 448
           +L SLHKY+P++HIV V        +        +F ETQFIAVTAYQN +IT LKI +N
Sbjct: 158 MLNSLHKYEPQVHIVRVG-------SAHRMVTNCSFPETQFIAVTAYQNEEITALKIKYN 210

Query: 449 PFAKGFRDNYDSSH 462
           PFAK F D  + +H
Sbjct: 211 PFAKAFLDAKERNH 224


>gi|117676399 T-box transcription factor TBX20 [Homo sapiens]
          Length = 447

 Score =  171 bits (433), Expect = 2e-42
 Identities = 116/318 (36%), Positives = 162/318 (50%), Gaps = 29/318 (9%)

Query: 274 RPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR--FQG 331
           + LW KFH   TEMIITK GRRMFP +  + +G++P A Y V +++V  D   +R  +  
Sbjct: 107 KELWDKFHELGTEMIITKSGRRMFPTIRVSFSGVDPEAKYIVLMDIVPVDNKRYRYAYHR 166

Query: 332 GKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQ 391
             W+  GKAD  +   ++YVHP+SP TG   ++Q +SF K+KLTNN+   + +   I+L 
Sbjct: 167 SSWLVAGKADPPLPA-RLYVHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGH---IILN 222

Query: 392 SLHKYQPRLHIVEVTEDGVEDLNEPSKT-QTFTFSETQFIAVTAYQNTDITQLKIDHNPF 450
           S+HKYQPR+HI++  +     LN  S+  +TF F ET F AVTAYQN  IT+LKID NPF
Sbjct: 223 SMHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPF 282

Query: 451 AKGFRDNYDSSHQIVPGGRYGVQSFFPEPFVNTLPQARYYNGERTVPQTNGLLSPQQSEE 510
           AKGFRD    S ++    R  V+S   +      P  R Y GE  V       +P +   
Sbjct: 283 AKGFRD----SSRLTDIERESVESLIQKHSYARSP-IRTYGGEEDVLGDESQTTPNRGSA 337

Query: 511 VANPP----QRWLVTPVQQP-----------GTNKLDISSYESEYTSSTLLPYGIKSLPL 555
                      W+ +    P           GT+   I++        +L PY    +PL
Sbjct: 338 FTTSDNLSLSSWVSSSSSFPGFQHPQSLTALGTSTASIATPIPHPIQGSLPPYSRLGMPL 397

Query: 556 QTSHALGYY--PDPTFPA 571
             S          PTFP+
Sbjct: 398 TPSAIASSMQGSGPTFPS 415


>gi|18201900 T-box 6 [Homo sapiens]
          Length = 436

 Score =  171 bits (433), Expect = 2e-42
 Identities = 94/220 (42%), Positives = 133/220 (60%), Gaps = 16/220 (7%)

Query: 238 PLYGPYPGAAAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMF 297
           P  G  P  +A  +   L G+ +          L NR LW +F    TEMIITK GRRMF
Sbjct: 71  PAMGTEPAPSAPEALHSLPGVSLS---------LENRELWKEFSSVGTEMIITKAGRRMF 121

Query: 298 PFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPN 357
           P    ++ GL+P A Y   ++V+  D   +R+QG +W   GKA+  +  +++Y+HP+SP 
Sbjct: 122 PACRVSVTGLDPEARYLFLLDVIPVDGARYRWQGRRWEPSGKAEPRLP-DRVYIHPDSPA 180

Query: 358 TGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPS 417
           TG+HWMRQ +SF ++KLTN+    + +   ++L S+HKYQPR+H+V   +   +     +
Sbjct: 181 TGAHWMRQPVSFHRVKLTNSTLDPHGH---LILHSMHKYQPRIHLVRAAQLCSQHWGGMA 237

Query: 418 KTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDN 457
              +F F ET FI+VTAYQN  ITQLKI  NPFAKGFR+N
Sbjct: 238 ---SFRFPETTFISVTAYQNPQITQLKIAANPFAKGFREN 274


>gi|55770860 T-box 15 [Homo sapiens]
          Length = 496

 Score =  169 bits (427), Expect = 1e-41
 Identities = 127/367 (34%), Positives = 179/367 (48%), Gaps = 49/367 (13%)

Query: 276 LWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRF--QGGK 333
           LW +FH   TEMIITK GRRMFP +   I GL+P   Y + +++V  D   +R+     K
Sbjct: 16  LWKRFHDIGTEMIITKAGRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSK 75

Query: 334 WVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSL 393
           W+  G AD+ +   ++Y+HP+S  +G  WMRQ +SF KLKLTNN+  +  +   I+L S+
Sbjct: 76  WMVAGNADSPVPP-RVYIHPDSLASGDTWMRQVVSFDKLKLTNNELDDQGH---IILHSM 131

Query: 394 HKYQPRLHIVEVTEDGVEDLNEPSK-------TQTFTFSETQFIAVTAYQNTDITQLKID 446
           HKYQPR+H++   +D   DL+ P+K        +TF F ET F  VTAYQN  IT+LKID
Sbjct: 132 HKYQPRVHVIR--KDFSSDLS-PTKPVPVGDGVKTFNFPETVFTTVTAYQNQQITRLKID 188

Query: 447 HNPFAKGFRDN------YDSSHQIVPGGRYGVQSFFPEPFVNTLPQARYYNGERTVPQTN 500
            NPFAKGFRD+       ++  +     R  V++   E F     Q     G      + 
Sbjct: 189 RNPFAKGFRDSGRNRTGLEAIMETYAFWRPPVRTLTFEDFTTMQKQQGGSTGTSPTTSST 248

Query: 501 GLLSPQQSEEVANPPQRWLVTPVQQPGTNKLDISSYESEYTSSTLLPYGIKSLPLQTSH- 559
           G  SP  S  + +P       P      N  ++   ES+  +  L  Y     P   S+ 
Sbjct: 249 GTPSPSASSHLLSPS---CSPPTFHLAPNTFNVGCRESQLCNLNLSDYP----PCARSNM 301

Query: 560 -ALGYYPDPTFPAMAGWGGRGSYQRKMAAGLPWTSRTSPTVFSEDQLSKEKVKEEIGSSW 618
            AL  YP          G   S   ++ +G   TS T P+     Q +   +      S 
Sbjct: 302 AALQSYP----------GLSDSGYNRLQSGT--TSATQPSETFMPQRTPSLI------SG 343

Query: 619 IETPPSI 625
           I TPPS+
Sbjct: 344 IPTPPSL 350


>gi|32567784 T-box 10 [Homo sapiens]
          Length = 385

 Score =  168 bits (425), Expect = 2e-41
 Identities = 98/236 (41%), Positives = 131/236 (55%), Gaps = 12/236 (5%)

Query: 239 LYGPYPGAAAAGSCGGLGGLGVPGSG------FRAHVYLCNRPLWLKFHRHQTEMIITKQ 292
           L  P+P      S G        G G       R  V L  +PLW +F++  TEMI+TK 
Sbjct: 31  LGSPFPSGPCTSSTGAQAVAEPTGQGPKNPRVSRVTVQLEMKPLWEEFNQLGTEMIVTKA 90

Query: 293 GRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWR--FQGGKWVTCGKADNNMQGNKMY 350
           GRRMFP     I G++  A Y + ++ +  D   +R  F    W+  GKAD    G +++
Sbjct: 91  GRRMFPPFQVKILGMDSLADYALLMDFIPLDDKRYRYAFHSSAWLVAGKADPATPG-RVH 149

Query: 351 VHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGV 410
            HP+SP  G+ WMRQ +SF KLKLTNN   +N +   I+L S+H+YQPR H+V V     
Sbjct: 150 FHPDSPAKGAQWMRQIVSFDKLKLTNNLLDDNGH---IILNSMHRYQPRFHVVFVDPRKD 206

Query: 411 EDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDSSHQIVP 466
            +       ++F F+ETQF AVTAYQN  ITQLKI  NPFAKGFR++   S  + P
Sbjct: 207 SERYAQENFKSFIFTETQFTAVTAYQNHRITQLKIASNPFAKGFRESDLDSWPVAP 262


>gi|158187511 T-box 22 isoform 2 [Homo sapiens]
          Length = 400

 Score =  142 bits (357), Expect = 1e-33
 Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 12/168 (7%)

Query: 296 MFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRF--QGGKWVTCGKADNNMQGNKMYVHP 353
           MFP +   + GL+P   Y+V ++VV  D   +R+     +W+  G  D+     + YVHP
Sbjct: 1   MFPSVRVKVKGLDPGKQYHVAIDVVPVDSKRYRYVYHSSQWMVAGNTDHLCIIPRFYVHP 60

Query: 354 ESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDL 413
           +SP +G  WMRQ ISF ++KLTNN+  +  +   I+LQS+HKY+PR+H++E  +    DL
Sbjct: 61  DSPCSGETWMRQIISFDRMKLTNNEMDDKGH---IILQSMHKYKPRVHVIE--QGSSVDL 115

Query: 414 NE----PSK-TQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 456
           ++    P++  +TF+F ET+F  VTAYQN  IT+LKI+ NPFAKGFRD
Sbjct: 116 SQIQSLPTEGVKTFSFKETEFTTVTAYQNQQITKLKIERNPFAKGFRD 163


>gi|122937424 one cut homeobox 3 [Homo sapiens]
          Length = 494

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 84/268 (31%), Positives = 100/268 (37%), Gaps = 42/268 (15%)

Query: 22  LESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSL------SCEAVSGEPAAASAGA 75
           L+   GG GG AG    A  +    D      + +G L      +CEA  G     +   
Sbjct: 54  LDGGGGGGGGGAGGAGGAGSAGGGADF---RGELAGPLHPAMGMACEA-PGLGGTYTTLT 109

Query: 76  PAAMLSDTDA-GDAF---ASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAAT 131
           P   L    A  D F   A+AAAVA      G  G        P+AA          AA+
Sbjct: 110 PLQHLPPLAAVADKFHQHAAAAAVA------GAHGGHPHAHPHPAAAPPPPPPPQRLAAS 163

Query: 132 ARYSMDSLSSERYYLQSPG----PQGSELAA--------PCSLFPYQAAAGAPHGPVYPA 179
              S   +  ER  L S G    P G EL A        P +L P    A  P  P  P 
Sbjct: 164 VSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPP 223

Query: 180 PNGARYPYG-----SMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYS 234
           P  A  P G      +LPP  F       GRA+     G   G GG+  GG G G+    
Sbjct: 224 PLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGS---- 279

Query: 235 QGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
             A L  P  G AAAG+ G  GG G PG
Sbjct: 280 -AAGLLAPLGGLAAAGAHGPHGGGGGPG 306



 Score = 35.0 bits (79), Expect = 0.23
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 195 GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGG--GGPGTYQYSQGAPLYGPYPGAAAAGSC 252
           G P  V        G G G G GAGG+ G G  GG   ++     PL   +P    A   
Sbjct: 42  GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPL---HPAMGMACEA 98

Query: 253 GGLGG 257
            GLGG
Sbjct: 99  PGLGG 103



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 28/76 (36%)

Query: 188 GSMLPPGGFPAAVCP------PGRAQFGPGAGAGSGA---GGSSGGGGGPGTYQYSQGAP 238
           G +L PG   +A         PGR    PG  AG  +   GG  GGGGG G         
Sbjct: 20  GELLSPGHARSAAAQHRGLVAPGR----PGLVAGMASLLDGGGGGGGGGAG--------- 66

Query: 239 LYGPYPGAAAAGSCGG 254
                 GA  AGS GG
Sbjct: 67  ------GAGGAGSAGG 76


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 81/274 (29%), Positives = 100/274 (36%), Gaps = 52/274 (18%)

Query: 15  PGAHFYPLESARGGSGGSAGHLPS----------AAPSPQKLDLDKASKKFSGSLSCEAV 64
           PGA   P  + R   GG     P           A P+P    L    +  +GS  C  V
Sbjct: 83  PGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS--CAPV 140

Query: 65  SGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPC-GEEELPSAAAAAAA 123
               A A+   PA       AG A  +A A   PGP  G    P  G+   P AA     
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNG 200

Query: 124 AAAA-----AAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYP 178
           +AA      AAA A   +++  +    L  P   G+ +  P    P+  AA AP  P  P
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP----PFVGAA-APPAPAAP 255

Query: 179 APNGARYPYG-------------SMLPPGGFPA-------AVCPPGRAQFGPGAGA---- 214
           +P  A  P               ++  P G PA       AV PP  AQ G  AGA    
Sbjct: 256 SPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAP 315

Query: 215 GSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAA 248
              AGG +G  G PG      GA    P PG  A
Sbjct: 316 APAAGGPAGVSGQPG-----PGAAAAAPAPGVKA 344



 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 70/231 (30%), Positives = 78/231 (33%), Gaps = 44/231 (19%)

Query: 22  LESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLS 81
           LES    S     HL    P  +                  A    PAA + GAP A   
Sbjct: 29  LESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPE 88

Query: 82  DTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSS 141
              AG A        +PGPP  R+         P   A  A  AA               
Sbjct: 89  PPPAGRARPGGGGPQRPGPPSPRR---------PLVPAGPAPPAAKL------------- 126

Query: 142 ERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVC 201
                  P P+GS  A  C+  P  AAA    GP  PAP G   P G        PAA+ 
Sbjct: 127 ------RPPPEGS--AGSCA--PVPAAAAVAAGP-EPAPAGPAKPAG--------PAALA 167

Query: 202 PPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQG-APLYGPYPGAAAAGS 251
              RA  GPG G G G G   G   GPG  Q   G A L   +  AA A S
Sbjct: 168 --ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVS 216



 Score = 36.2 bits (82), Expect = 0.10
 Identities = 58/206 (28%), Positives = 66/206 (32%), Gaps = 43/206 (20%)

Query: 16  GAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGA 75
           GA   P  +A       A   P+AAP P                   A    P    AG 
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPPPPP--------------PAPATLARPPGHPAGP 290

Query: 76  PAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYS 135
           P A  +      A    +A A P P     G P G    P   AAAAA A    A     
Sbjct: 291 PTAAPAVPPPAAAQNGGSAGAAPAPAPA-AGGPAGVSGQPGPGAAAAAPAPGVKA----- 344

Query: 136 MDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGG 195
                S +  +Q+  P    LAA     P   AA    GP      GA       LP   
Sbjct: 345 ----ESPKRVVQAAPPAAQTLAAS---GPASTAASMVIGPTM---QGA-------LPS-- 385

Query: 196 FPAAVCPPGRAQFGPGAGAGSGAGGS 221
            PAAV PP     G   G   GA G+
Sbjct: 386 -PAAVPPPAP---GTPTGLPKGAAGA 407



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 16  GAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGA 75
           GA   P  +A G +G S    P AA +     +   S K     +  A     A+  A  
Sbjct: 310 GAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPAST 369

Query: 76  PAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYS 135
            A+M+       A  S AAV  P P     G+P G   LP  AA A   + +   TA  S
Sbjct: 370 AASMVIGPTMQGALPSPAAVPPPAP-----GTPTG---LPKGAAGAVTQSLSRTPTATTS 421


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 80/302 (26%), Positives = 106/302 (35%), Gaps = 58/302 (19%)

Query: 6   QLLVSSVNLPGAHFYPLESARGG--SGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEA 63
           +L +S   LPG+  +P  SA        S G  P   PS   L     S   +G LS   
Sbjct: 129 ELFISGA-LPGSSTFPSSSALSAYQHPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHD 187

Query: 64  VSGEPAAASAGAPAAMLSDTDAGDAFASAAAVA-------KPGPPDGRKGSPCGEEELPS 116
           V     + +   P+++  +  AG      A +        +PGPPD     P     LP+
Sbjct: 188 VLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPD----PPPPPRHLPT 243

Query: 117 AAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCS---LFPYQAAAGAPH 173
                A+++AAAAA  + S    +   +   +PGP   E A P     +  YQ  A A  
Sbjct: 244 QFNLLASSSAAAAAAEQSSPQLYN---FSGAAPGPPPPERALPRQDTVIKHYQRPASAQP 300

Query: 174 GPVYPAPN--------GARYPY--------------GSMLPPGGFPAAVCPPGRAQFGPG 211
            P  P  +        G  YP               G   P  G P+   P G      G
Sbjct: 301 PPPPPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASG 360

Query: 212 AGAGSGAGGSSGGGGGPGTYQ-------YSQGAPLYG---------PYPGAAAAGSCGGL 255
              G  A G  G GGG G Y+       Y  G   YG         P P + A   C  L
Sbjct: 361 RATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSL 420

Query: 256 GG 257
           GG
Sbjct: 421 GG 422



 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 67/269 (24%), Positives = 84/269 (31%), Gaps = 44/269 (16%)

Query: 21  PLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAV-------SGEPAAASA 73
           P  +  GG+GG  G       SP      K  K   G+ +  A        +  P   S 
Sbjct: 365 PEAAGGGGAGGGGGGYRPIIQSPGY----KTGKGGYGAAAGGATRPPPPRSTATPKCQSL 420

Query: 74  GAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAA------ 127
           G PAA  +   A  A  +      PG P G  G     +      A   + A +      
Sbjct: 421 GGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPP 480

Query: 128 ----------AAATARYSMDSLSSERYYLQS---PGPQGSELAAPCSLFPYQAAAGAPHG 174
                      A    YS D L  + Y +Q    PGP       P +      + G  H 
Sbjct: 481 QPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTG--HS 538

Query: 175 PVYPAPNGARYPYGSMLPPGG--FPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQ 232
           P      G   P  S L  GG   P+ +  P   Q  P  G   G G      G PG Y 
Sbjct: 539 PALSGHGGGWGP--SSLGGGGEASPSHIIRP--LQSPPATGRPPGVGSP----GAPGKYL 590

Query: 233 YS--QGAPLYGPYPGAAAAGSCGGLGGLG 259
            S    AP   P    + A   GG  G G
Sbjct: 591 SSVLASAPFLAPPGAGSYAAGAGGYKGKG 619



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 75/303 (24%), Positives = 99/303 (32%), Gaps = 73/303 (24%)

Query: 23  ESARGGSGGSAGHL-----PSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPA 77
           ++ +GG G +AG       P +  +P+   L   +  ++   +  A      A S G P 
Sbjct: 390 KTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQ 449

Query: 78  AMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMD 137
            +L     G  F    A      P    G P    + PS       A   +     YS D
Sbjct: 450 GLLGPQAYGQGFGGGQAQDLSKAPSYSGGPP----QPPSGPPPPGLATCQS-----YSPD 500

Query: 138 SLSSERYYLQS---PGP----QGSELAAPCSLF-----PYQAAAGAPHGPVYPAPNGARY 185
            L  + Y +Q    PGP    QG   A+P   +     P  +  G   GP      G   
Sbjct: 501 QLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEAS 560

Query: 186 PYGSMLPPGGFPAAVCPPGRAQFG------------------PGAGAG-SGAGGSSGGG- 225
           P   + P    PA   PPG    G                  PGAG+  +GAGG  G G 
Sbjct: 561 PSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGD 620

Query: 226 -----GGPG------------TYQYSQGAP----------LYGPYPGAAAAGSCGGLGGL 258
                 GPG              Q+   AP          L G    A A+   GG GG 
Sbjct: 621 GSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGAADASKGLGGSGGA 680

Query: 259 GVP 261
           G P
Sbjct: 681 GGP 683



 Score = 37.0 bits (84), Expect = 0.061
 Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 26/152 (17%)

Query: 98  PGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELA 157
           PG  +  K  P G     + A A+  A    AA    +       R  +QSPG +  +  
Sbjct: 341 PGAGEPSKAGPSG-----ATAGASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGG 395

Query: 158 APCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSG 217
                  Y AAAG    P  P P     P    L   G PAA    G+A         SG
Sbjct: 396 -------YGAAAGGATRP--PPPRSTATPKCQSL---GGPAAAYATGKA---------SG 434

Query: 218 AGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAA 249
           AGG+ G    PG  Q   G   YG   G   A
Sbjct: 435 AGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQA 466



 Score = 33.9 bits (76), Expect = 0.51
 Identities = 62/221 (28%), Positives = 75/221 (33%), Gaps = 40/221 (18%)

Query: 69  AAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPS----AAAAAAAA 124
           A++SA A AA  S     + F+ AA    PGPP   +  P  +  +      A+A     
Sbjct: 249 ASSSAAAAAAEQSSPQLYN-FSGAA----PGPPPPERALPRQDTVIKHYQRPASAQPPPP 303

Query: 125 AAAAAATARY-----SMDSLSSERYYLQSP---GPQGSELAAPCSLFPYQAAAGAPH--- 173
              A A   Y     S  S+        SP   G        P    P  A AGA     
Sbjct: 304 PPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRAT 363

Query: 174 GPVYPAPNGARYPYGSMLP----------PGGFPAAVC-----PPGRAQFGP-----GAG 213
           GP      GA    G   P           GG+ AA       PP R+   P     G  
Sbjct: 364 GPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGP 423

Query: 214 AGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGG 254
           A + A G + G GG G   YS G P     P A   G  GG
Sbjct: 424 AAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGG 464



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 29/117 (24%)

Query: 148 SPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGS----MLPPGGFPA----- 198
           SPG  G  L++  +  P+ A  GA     Y A  G     G     +  PGG PA     
Sbjct: 582 SPGAPGKYLSSVLASAPFLAPPGAGS---YAAGAGGYKGKGDGSELLAGPGGPPAERTED 638

Query: 199 ----------AVCPP------GRAQFGPGAGAGSGAGGSSGGGGGPGT-YQYSQGAP 238
                     A  PP      G       A A  G GGS G GG PGT Y+ ++  P
Sbjct: 639 EEFLIQHLLQAPSPPRTSGADGLVGEDGAADASKGLGGSGGAGGPPGTPYELAKEDP 695


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 68/241 (28%), Positives = 84/241 (34%), Gaps = 36/241 (14%)

Query: 28  GSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASA-GAPAAMLSDTDAG 86
           G+ G +G  PS  P  +        K   G        G P    A GAP A+ +   AG
Sbjct: 631 GTAGPSG--PSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAG 688

Query: 87  -DAFASAAAVAKPGPPDGRKGSPCGEEEL----PSAAAAAAAAAAAAAATARYSMDSLSS 141
                  A  A P  P G +GSP    E+    P+  A  A AA    A           
Sbjct: 689 ATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKG 748

Query: 142 ERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVC 201
           E   +   GP G+            A    P+GP  P P G+R   G             
Sbjct: 749 ENGVVGPTGPVGA------------AGPAGPNGP--PGPAGSRGDGG------------- 781

Query: 202 PPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVP 261
           PPG   F PGA   +G  G SG  G PG    +    L GP       G  G +G +G P
Sbjct: 782 PPGMTGF-PGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPP 840

Query: 262 G 262
           G
Sbjct: 841 G 841



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 73/249 (29%), Positives = 85/249 (34%), Gaps = 41/249 (16%)

Query: 28  GSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLSDTDAGD 87
           GS GS G +  A P          S    G        GE  A     PA          
Sbjct: 235 GSDGSVGPVGPAGPI--------GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVG 286

Query: 88  AFASAAAVAKPGPPD-----GRKGSP-----CGEEELPSAAAAAAAAAAAAAATARYSMD 137
               +  V  PG P      G KG+       G   LP          AA A  AR    
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR---- 342

Query: 138 SLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYG---SMLPPG 194
            L  E      PGP GS+  +     P  A    P GP      G R P G   S  PPG
Sbjct: 343 GLVGE------PGPAGSKGESGNKGEPGSAGPQGPPGP--SGEEGKRGPNGEAGSAGPPG 394

Query: 195 GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGG 254
                  PPG  +  PG+    GA G +G  G PG+   S  A + GP   A   G  G 
Sbjct: 395 -------PPG-LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGL 446

Query: 255 LGGLGVPGS 263
           +G  G+PGS
Sbjct: 447 MGPRGLPGS 455



 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 78/275 (28%), Positives = 94/275 (34%), Gaps = 52/275 (18%)

Query: 14  LPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASA 73
           LPG    P      G+ G+ G +    P+         SK  SG+       GEP +A  
Sbjct: 323 LPGPRGIPGPVGAAGATGARGLVGEPGPA--------GSKGESGN------KGEPGSAGP 368

Query: 74  GAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSA--------------AA 119
             P     +         A +   PGPP G +GSP G   LP A              A+
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPP-GLRGSP-GSRGLPGADGRAGVMGPPGSRGAS 426

Query: 120 AAAAAAAAAAATARYSMDSLSSERYYLQSPG---PQGSELAAPCSLFPYQAAAGAPHGPV 176
             A          R     L   R    SPG   P G E   P  L       G P GP+
Sbjct: 427 GPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKE--GPVGL---PGIDGRP-GPI 480

Query: 177 YPAPNGARYPYGSMLPPG-----GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTY 231
            PA  GAR   G++  PG     G P      G A    GA    G  G++G  G PG  
Sbjct: 481 GPA--GARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLA-GARGAPGPDGNNGAQGPPGPQ 537

Query: 232 QYSQGAPLYGPYPG----AAAAGSCGGLGGLGVPG 262
               G    GP PG        G  G  G +G PG
Sbjct: 538 GVQGGKGEQGP-PGPPGFQGLPGPSGPAGEVGKPG 571



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 68/264 (25%), Positives = 80/264 (30%), Gaps = 29/264 (10%)

Query: 26  RGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLSDTDA 85
           +G  GG     P   P  Q L          G      + GE        P         
Sbjct: 537 QGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGE 596

Query: 86  GDAFASAAAVAKPGP-----PDGRKGSP-------CGEEELPSAAAAAAAAAAAAAATAR 133
             A      +   GP     PDG KG P             PS       AA        
Sbjct: 597 SGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGE 656

Query: 134 YSMDSLSSERYYLQSPGPQGSELA-------APCSLFPYQAAAGAPHGPVYPA-PNGARY 185
                L  E   + +PG  G+  A        P      +  AGA  GP  PA P G+  
Sbjct: 657 KGEPGLRGE---IGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAA-GPAGPAGPRGSPG 712

Query: 186 PYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPY-- 243
             G + P G  P     P  A   PGA    GA G  G  G  G       A   GP   
Sbjct: 713 ERGEVGPAG--PNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGP 770

Query: 244 PGAAAAGSCGGLGGL-GVPGSGFR 266
           PG A +   GG  G+ G PG+  R
Sbjct: 771 PGPAGSRGDGGPPGMTGFPGAAGR 794



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 90/369 (24%), Positives = 112/369 (30%), Gaps = 122/369 (33%)

Query: 9    VSSVNLPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEP 68
            V +V  PG   +  E    G  G+AG  P   P PQ            G L    + G P
Sbjct: 834  VGAVGPPG---FAGEKGPSGEAGTAG--PPGTPGPQ------------GLLGAPGILGLP 876

Query: 69   AA-ASAGAPAAMLSDTDAGDAFASAAAVAKPGP-----PDGRKGSPCGEEELPSAAAAAA 122
             +    G P               A AV +PGP     P G +G P G    P    A  
Sbjct: 877  GSRGERGLPGV-------------AGAVGEPGPLGIAGPPGARGPP-GAVGSPGVNGAPG 922

Query: 123  AAAAAA-----AATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVY 177
             A             R        ER Y  + GP G+            A A  PHGPV 
Sbjct: 923  EAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGA------------AGAPGPHGPVG 970

Query: 178  PA----------PNGARYPYGSMLPPG-----------GFPAAVCP-------------- 202
            PA          P+G   P G++ P G           G P    P              
Sbjct: 971  PAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQG 1030

Query: 203  -PGRA----------QFGPGAGAG-SGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAG 250
             PG A            GP    G +G  G +G  G  G       A + GP      AG
Sbjct: 1031 LPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG 1090

Query: 251  SCGGLGGLGVPG-------SGFRAHVYLCNRP--------------LWLKFHRHQTEMII 289
              G  G  G PG        G+    Y  ++P                LK   +Q E ++
Sbjct: 1091 PPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLL 1150

Query: 290  TKQGRRMFP 298
            T +G R  P
Sbjct: 1151 TPEGSRKNP 1159



 Score = 38.5 bits (88), Expect = 0.021
 Identities = 74/283 (26%), Positives = 86/283 (30%), Gaps = 56/283 (19%)

Query: 23  ESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASA----GAPAA 78
           E    G  G AG  P+ A        ++ +K   G       +G   AA      G P  
Sbjct: 716 EVGPAGPNGFAG--PAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGP 773

Query: 79  MLSDTDAGD----AFASAAAVAKPGPPDGRKG-----SPCGEEEL--------PSAAAAA 121
             S  D G      F  AA    P  P G  G      P G+E L        P      
Sbjct: 774 AGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833

Query: 122 AAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSL----------FPYQAAAGA 171
             A               +       +PGPQG  L AP  L           P  A A  
Sbjct: 834 VGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGL-LGAPGILGLPGSRGERGLPGVAGAVG 892

Query: 172 PHGPVYPA-PNGARYPYGSMLPPG-----------GFPAAVCPPGRAQFGPGAGAGSGAG 219
             GP+  A P GAR P G++  PG           G P    PPGR           G  
Sbjct: 893 EPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGR----------DGQP 942

Query: 220 GSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
           G  G  G PG       A   GP+     AG  G  G  G  G
Sbjct: 943 GHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSG 985



 Score = 34.3 bits (77), Expect = 0.39
 Identities = 49/191 (25%), Positives = 60/191 (31%), Gaps = 27/191 (14%)

Query: 94  AVAKPGP-----PDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSSERYYLQS 148
           A   PGP     P G  G P   +  P+ A   A     A             ER  +  
Sbjct: 104 AAGAPGPQGFQGPAGEPGEP--GQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVV-- 159

Query: 149 PGPQGSE-------LAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVC 201
            GPQG+        L     +  +    G    P  P   G     G    PG   A   
Sbjct: 160 -GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGL 218

Query: 202 PPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPG----------AAAAGS 251
           P  R + G    AG+     S G  GP     S G P +   PG          A  AG 
Sbjct: 219 PGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGP 278

Query: 252 CGGLGGLGVPG 262
            G  G +G+PG
Sbjct: 279 AGPRGEVGLPG 289



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 32/116 (27%), Positives = 37/116 (31%), Gaps = 10/116 (8%)

Query: 149 PGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRA-- 206
           PGP G +              G P  P  P P G    + +     G      P G    
Sbjct: 47  PGPPGRD--------GEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGP 98

Query: 207 QFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
           +  PGA    G  G  G  G PG    +  A   GP      AG  G  G  G PG
Sbjct: 99  RGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPG 154


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 79/279 (28%), Positives = 92/279 (32%), Gaps = 68/279 (24%)

Query: 28  GSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAA-ASAGAPAAMLSDTDAG 86
           G GG  G   +  P PQ L   +      G        GEP     AGAP A     DAG
Sbjct: 624 GPGGDKGD--TGPPGPQGL---QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG 678

Query: 87  DAFASAAAVAKPGPPDGRKGSPC----GEEELPSAAAAAAAAAAAAAATARYSMDSLSSE 142
                  A  + GPP G  G+P          P     AA       A     +  +  E
Sbjct: 679 -------APGERGPP-GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGE 730

Query: 143 RYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPG-------- 194
           R  L SPGP+G +              G P     P  +G R P G + PPG        
Sbjct: 731 RGGLGSPGPKGDK-----------GEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK 779

Query: 195 ------GFPAAVCPPG----RAQFGPGAGAG----------------SGAGGSSGGGGGP 228
                 G P    P G    R + GP   AG                 GA G  G GG P
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839

Query: 229 GTYQYSQGAPLYGPYPGAAAA----GSCGGLGGLGVPGS 263
           G      G+   GP PG        GS GG G  G PG+
Sbjct: 840 GVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGA 877



 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 72/256 (28%), Positives = 85/256 (33%), Gaps = 51/256 (19%)

Query: 14   LPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASA 73
            LPG      E  R G+ GS G LP    SP      K  +  +GS       G P     
Sbjct: 1000 LPGLAGTAGEPGRDGNPGSDG-LPGRDGSPG----GKGDRGENGSPGAPGAPGHPGPPGP 1054

Query: 74   GAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATAR 133
              PA    D         A A   PGP  G +G+P  +             AA       
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGA---PGPA-GSRGAPGPQGPRGDKGETGERGAAG------ 1104

Query: 134  YSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPP 193
                 +   R +  +PG  GS   A       Q A G+P       P G R P G   PP
Sbjct: 1105 -----IKGHRGFPGNPGAPGSPGPAG-----QQGAIGSP------GPAGPRGPVGPSGPP 1148

Query: 194  G-----GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAA 248
            G     G P  + PPG            G  GS G  G PG     Q  P   P P  A 
Sbjct: 1149 GKDGTSGHPGPIGPPGPR-------GNRGERGSEGSPGHPG-----QPGP---PGPPGAP 1193

Query: 249  AGSCGGLGGLGVPGSG 264
               CGG+G   + G G
Sbjct: 1194 GPCCGGVGAAAIAGIG 1209



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 71/252 (28%), Positives = 88/252 (34%), Gaps = 30/252 (11%)

Query: 30  GGSAGHL-PSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAAMLSDTDAGDA 88
           GG AG+  P+  P P             GS   +   GEP  A    P           A
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPG------PPGA 220

Query: 89  FASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAA--AATARYSMDSLSSERYYL 146
              +    K G   GR G P GE  LP        A              D  + E+   
Sbjct: 221 IGPSGPAGKDGE-SGRPGRP-GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGET 278

Query: 147 QSPGPQGS-----ELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVC 201
            +PG +G      E  AP  + P + A G    P  P   GAR   G+     G P    
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGP-RGAPGERGRPGLPGAAGARGNDGAR-GSDGQPGPPG 336

Query: 202 PPGRAQF--GPGAGAGSGAGGSSGGGGGPGT--------YQYSQGAPLYGPYPGAAAAGS 251
           PPG A F   PGA    G  GS G  G PG         +  +QG P  GP     + G 
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPP--GPPGINGSPGG 394

Query: 252 CGGLGGLGVPGS 263
            G +G  G+PG+
Sbjct: 395 KGEMGPAGIPGA 406



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 78/288 (27%), Positives = 91/288 (31%), Gaps = 57/288 (19%)

Query: 14  LPGAHFYPLESARGGSGGSAGH--LPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPA-A 70
           +PG      E  + GS G  G   LP AA        ++ +  F G      + GE   A
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGAAG-------ERGAPGFRGPAGPNGIPGEKGPA 506

Query: 71  ASAGAPAAMLSDTDAGDAFASAAA--------VAKPGPP--DGRKGSPCGEEEL------ 114
              GAP        AG+                  PG P  DG+ G P  + E       
Sbjct: 507 GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP 566

Query: 115 -PSAAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPH 173
            PS                       + ER     PGPQG          P +     P 
Sbjct: 567 GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGP---------PGKNGETGPQ 617

Query: 174 GPVYPAPNGARYPYGSMLPPG-----GFPAAVCPPGR----AQFGPGAGAGS-GAGGSSG 223
           GP  P P G     G   PPG     G P    PPG      + GP   AG+ GA G  G
Sbjct: 618 GP--PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675

Query: 224 GGGGPGTYQ---------YSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
             G PG               GA   GP  G  AAG  G  G  G PG
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723



 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 70/259 (27%), Positives = 87/259 (33%), Gaps = 28/259 (10%)

Query: 21   PLESARGGSGGSAGHL----PSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASA--- 73
            P E   GG  G AG      P+  P PQ +  ++ S    G+       G P    +   
Sbjct: 830  PGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGN 889

Query: 74   ----GAPAAMLSDTDAGDAFASAAAVAKPGP--PDGRKGSPCGEEELPSAAAAAAAAA-- 125
                G   +   D   G A  +  A   PG   P G  G P GE+  P A     A    
Sbjct: 890  PGPPGPSGSPGKDGPPGPA-GNTGAPGSPGVSGPKGDAGQP-GEKGSPGAQGPPGAPGPL 947

Query: 126  AAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARY 185
              A  T    +           SPGPQG +     S  P         GP  P P G   
Sbjct: 948  GIAGITGARGLAGPPGMPGPRGSPGPQGVKGE---SGKPGANGLSGERGP--PGPQGLPG 1002

Query: 186  PYGSMLPPG--GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPY 243
              G+   PG  G P +   PGR     G+  G G  G +G  G PG   +       GP 
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGR----DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPA 1058

Query: 244  PGAAAAGSCGGLGGLGVPG 262
              +   G  G  G  G PG
Sbjct: 1059 GKSGDRGESGPAGPAGAPG 1077



 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 65/212 (30%), Positives = 75/212 (35%), Gaps = 56/212 (26%)

Query: 66  GEPAAASA-GAPAAMLSDTDAGDAFASAAAVAKPGPPD--GRKGSPCGEEELPSAAAAAA 122
           G P AA A G   A  SD   G           PGPP   G  GSP  + E+  A +  +
Sbjct: 312 GLPGAAGARGNDGARGSDGQPGP----------PGPPGTAGFPGSPGAKGEVGPAGSPGS 361

Query: 123 AAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNG 182
             A                       PGPQG             A A  P GP  P  NG
Sbjct: 362 NGAPGQRG-----------------EPGPQG------------HAGAQGPPGP--PGING 390

Query: 183 ARYPYGSMLPPG-----GFPAAVCPPGRA--QFGPGAGAGSGAGGSSGGGGGPGTYQYSQ 235
           +    G M P G     G   A  PPG A     PG   G+G  G +G  G PG      
Sbjct: 391 SPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450

Query: 236 GAPLYGPYPGAAAA----GSCGGLGGLGVPGS 263
            A + G  PGA       GS G  G  G+PG+
Sbjct: 451 EAGIPG-VPGAKGEDGKDGSPGEPGANGLPGA 481



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 36/100 (36%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 172 PHGPVYPAPNGARYPYGSMLPPG--GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGG--- 226
           P GP  P P G +   GS   PG  GFP A   PG     PG+    G  G SG  G   
Sbjct: 850 PAGP--PGPQGVKGERGSPGGPGAAGFPGARGLPGP----PGSNGNPGPPGPSGSPGKDG 903

Query: 227 --GPGTYQYSQGAP-LYGPYPGAAAAGSCGGLGGLGVPGS 263
             GP     + G+P + GP   A   G  G  G  G PG+
Sbjct: 904 PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGA 943



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 76/292 (26%), Positives = 89/292 (30%), Gaps = 54/292 (18%)

Query: 9   VSSVNLPGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEP 68
           V     PG++  P +    G  G AG      P P  ++     K   G +    + G P
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAG--AQGPPGPPGINGSPGGK---GEMGPAGIPGAP 407

Query: 69  AAASAGAPAAMLSDTDAGDAFASAA------AVAKPGP-----------------PDGRK 105
               A  P        A      A       A  +PGP                  DG+ 
Sbjct: 408 GLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD 467

Query: 106 GSPC--GEEELPSAAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLF 163
           GSP   G   LP AA    A      A      + +  E+      GP G E  AP    
Sbjct: 468 GSPGEPGANGLPGAAGERGAPGFRGPA----GPNGIPGEK------GPAG-ERGAPGPAG 516

Query: 164 PYQAAA-----GAPHGPVY---PAPNGARYPYGSMLPPG--GFPAAVCPPGRAQFGPGAG 213
           P  AA      G P GP     P   G     G   PPG  G      PPG +  GP   
Sbjct: 517 PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS--GPRGQ 574

Query: 214 AG-SGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPGSG 264
            G  G  G  G  G PG      G    GP       G  G  G  G  G G
Sbjct: 575 PGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPG 626



 Score = 35.8 bits (81), Expect = 0.14
 Identities = 67/273 (24%), Positives = 82/273 (30%), Gaps = 41/273 (15%)

Query: 15   PGAHFYPLESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFS-------GSLSCEAVSGE 67
            PG    P +    G  G+ G   S   S  K D  +  +K S       G+     ++G 
Sbjct: 893  PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGI 952

Query: 68   PAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPP--DGRKGSPCGEEELPSAAAAAAAAA 125
              A     P  M     +           KPG     G +G P G + LP  A  A    
Sbjct: 953  TGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPP-GPQGLPGLAGTAGEPG 1011

Query: 126  AAAAATARYSMDSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARY 185
                       D L        SPG +G              + GAP  P +P P G   
Sbjct: 1012 R----DGNPGSDGLPGRD---GSPGGKGDR--------GENGSPGAPGAPGHPGPPGPVG 1056

Query: 186  PYGSM-----LPPGGFPAAVCPPG-RAQFGP----------GAGAGSGAGGSSGGGGGPG 229
            P G         P G   A  P G R   GP          G    +G  G  G  G PG
Sbjct: 1057 PAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPG 1116

Query: 230  TYQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
                   A   G       AG  G +G  G PG
Sbjct: 1117 APGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPG 1149



 Score = 33.1 bits (74), Expect = 0.88
 Identities = 37/122 (30%), Positives = 40/122 (32%), Gaps = 26/122 (21%)

Query: 155 ELAAPCSLFPY-QAAAGAPHGPVYPA--PNGARYPYGSMLPPGGFPAAVCPPGRAQFGPG 211
           EL  P    P+ +  A  P  P  P   PNG + P G    PG       PPG     PG
Sbjct: 71  ELDCPNPEIPFGECCAVCPQPPTAPTRPPNG-QGPQGPKGDPG-------PPGI----PG 118

Query: 212 AGAGSGAGGSSGGGGGP-----------GTYQYSQGAPLYGPYPGAAAAGSCGGLGGLGV 260
                G  G  G  G P           G   YS     Y    G A  G  G  G  G 
Sbjct: 119 RNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGP 178

Query: 261 PG 262
           PG
Sbjct: 179 PG 180


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,718,950
Number of Sequences: 37866
Number of extensions: 2062991
Number of successful extensions: 23288
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 933
Number of HSP's that attempted gapping in prelim test: 10947
Number of HSP's gapped (non-prelim): 6578
length of query: 686
length of database: 18,247,518
effective HSP length: 109
effective length of query: 577
effective length of database: 14,120,124
effective search space: 8147311548
effective search space used: 8147311548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.