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Search of human proteins with 22538428
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo
sapiens]
(565 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens] 1177 0.0
gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens] 1177 0.0
gi|50345881 cytoplasmic polyadenylation element binding protein ... 49 2e-05
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 46 8e-05
gi|150417989 cyclin K isoform 1 [Homo sapiens] 46 1e-04
gi|54860105 nadrin isoform 2 [Homo sapiens] 45 1e-04
gi|27502386 nuclear factor of activated T-cells, cytosolic compo... 44 5e-04
gi|33356556 amelogenin (X chromosome) isoform 3 precursor [Homo ... 43 9e-04
gi|33356558 amelogenin (X chromosome) isoform 2 precursor [Homo ... 43 9e-04
gi|4502071 amelogenin (X chromosome) isoform 1 precursor [Homo s... 43 9e-04
gi|54860079 nadrin isoform 1 [Homo sapiens] 43 9e-04
gi|148277037 AP2 associated kinase 1 [Homo sapiens] 42 0.001
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 42 0.001
gi|47132519 Ras association and pleckstrin homology domains 1 is... 42 0.001
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 41 0.003
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 41 0.003
gi|14149696 SEC31 homolog B [Homo sapiens] 41 0.003
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 41 0.003
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 41 0.003
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 40 0.004
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 40 0.004
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 40 0.004
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 40 0.004
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 40 0.006
gi|33356148 formin-like 1 [Homo sapiens] 40 0.007
gi|153792074 proline rich 12 [Homo sapiens] 40 0.007
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 39 0.010
gi|160707881 formin 2 [Homo sapiens] 39 0.010
>gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]
Length = 574
Score = 1177 bits (3046), Expect = 0.0
Identities = 565/565 (100%), Positives = 565/565 (100%)
Query: 1 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF 60
MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF
Sbjct: 10 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF 69
Query: 61 SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES 120
SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES
Sbjct: 70 SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES 129
Query: 121 VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR 180
VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR
Sbjct: 130 VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR 189
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE
Sbjct: 190 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 249
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 300
PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP
Sbjct: 250 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 309
Query: 301 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 360
GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE
Sbjct: 310 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 369
Query: 361 CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN 420
CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN
Sbjct: 370 CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN 429
Query: 421 FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDED 480
FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDED
Sbjct: 430 FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDED 489
Query: 481 EHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNIL 540
EHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNIL
Sbjct: 490 EHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNIL 549
Query: 541 LRLLREEEYVAPPRGPLPTLQVVPL 565
LRLLREEEYVAPPRGPLPTLQVVPL
Sbjct: 550 LRLLREEEYVAPPRGPLPTLQVVPL 574
>gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]
Length = 565
Score = 1177 bits (3046), Expect = 0.0
Identities = 565/565 (100%), Positives = 565/565 (100%)
Query: 1 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF 60
MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF
Sbjct: 1 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF 60
Query: 61 SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES 120
SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES
Sbjct: 61 SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES 120
Query: 121 VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR 180
VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR
Sbjct: 121 VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR 180
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE
Sbjct: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 300
PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP
Sbjct: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 300
Query: 301 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 360
GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE
Sbjct: 301 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 360
Query: 361 CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN 420
CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN
Sbjct: 361 CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDTAMEVVKFVN 420
Query: 421 FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDED 480
FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDED
Sbjct: 421 FLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDED 480
Query: 481 EHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNIL 540
EHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNIL
Sbjct: 481 EHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNIL 540
Query: 541 LRLLREEEYVAPPRGPLPTLQVVPL 565
LRLLREEEYVAPPRGPLPTLQVVPL
Sbjct: 541 LRLLREEEYVAPPRGPLPTLQVVPL 565
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 48.5 bits (114), Expect = 2e-05
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 41/199 (20%)
Query: 201 SQPQDVLGIRQLERPLPLTSVC------YPQDLPRPLRSREFPQFEPQRYPACAQMLPPN 254
+QPQ RQ ++P P +SV + P+P + P P P A P
Sbjct: 12 TQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPP-APNGPDK 70
Query: 255 LSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPL-PGASVRGLHPVQKV 313
+ +P PG HQ P QP P +P PGAS L P
Sbjct: 71 MQMESPL-----LPGLSFHQPPQ-------------QPPPPQEPAAPGAS---LSP---- 105
Query: 314 ILNYPSPWDQEERPAQRDCSFPGLPR------HQDQPHHQPPNRAGAPGESLECPAELRP 367
++ S W A D F G+ Q+ PHH P G +
Sbjct: 106 --SFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHH 163
Query: 368 QVPQPPSPAAVPRPPSNPP 386
Q P PP+PA P P+ PP
Sbjct: 164 QQPPPPAPAPQPAQPAQPP 182
Score = 32.0 bits (71), Expect = 1.6
Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 31/131 (23%)
Query: 297 QPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPG 356
QP P +SV P + P P + PA + P P D+ + P PG
Sbjct: 25 QPQPESSVSEA-PSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPL---LPG 80
Query: 357 ESLECPAELRPQVPQPPSPAAVPRPPSNP-----------------------PARGTLKT 393
S P PQ P PP A P +P P GT+
Sbjct: 81 LSFHQP----PQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLF 136
Query: 394 SNLPEELRKVF 404
N P + VF
Sbjct: 137 QNFPHHVNPVF 147
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 46.2 bits (108), Expect = 8e-05
Identities = 62/210 (29%), Positives = 82/210 (39%), Gaps = 27/210 (12%)
Query: 201 SQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAP 260
SQ +LG P P VC P P+ + P + P A LP P AP
Sbjct: 631 SQQSVMLGSLADAAPSPAQCVCSPPVSEGPVLPQSLPSLGAYQQPTAAPGLPVGSVP-AP 689
Query: 261 WNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVI-LNYPS 319
CP S P P ++ V+ P P P+P + P Q+ L P+
Sbjct: 690 -----ACPPSLQQHFPD----PAMSFAPVLPP--PSTPMPTGPGQPAPPGQQPPPLAQPT 738
Query: 320 PWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGE--SLECP-AELRP--QVP--QP 372
P Q P Q +P H P+ P ++ GAP + L+ P A L+P QVP P
Sbjct: 739 PLPQVLAP-QPVVPLQPVPPHLP-PYLAPASQVGAPAQLKPLQMPQAPLQPLAQVPPQMP 796
Query: 373 PSPAAVPRPP-----SNPPARGTLKTSNLP 397
P P P P PPA L T+ +P
Sbjct: 797 PIPVVPPITPLAGIDGLPPALPDLPTATVP 826
Score = 36.6 bits (83), Expect = 0.063
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 26/178 (14%)
Query: 215 PLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQ 274
PL + +P P + R P P A + PP ++ + + PG P +
Sbjct: 855 PLQAVKLPHPPGAPLAMPCRTIVPNAPATIPLLA-VAPPGVAALSIHSAVAQLPGQPVYP 913
Query: 275 VPYGH----DYPRAAYQQVI-------QPALPGQP-LPGASVRGLHPVQKVILNYPSPWD 322
+ D P + + V QPALP QP LP V P Q + P
Sbjct: 914 AAFPQMAPTDVPPSPHHTVQNMRATPPQPALPPQPTLPPQPVL---PPQPTLPPQPVLPP 970
Query: 323 QEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLEC-PAELRPQVPQPPSPAAVP 379
Q RP Q P LP QP PP P +L P L+P +P+ +PAA P
Sbjct: 971 QPTRPPQ-----PVLP---PQPM-LPPQPVLPPQPALPVRPEPLQPHLPEQAAPAATP 1019
Score = 34.7 bits (78), Expect = 0.24
Identities = 57/221 (25%), Positives = 77/221 (34%), Gaps = 30/221 (13%)
Query: 181 PQPHRN----RAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREF 236
P PH RA P + PQ VL + P P+ P+P R +
Sbjct: 926 PSPHHTVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLP-------PQPTRPPQ- 977
Query: 237 PQFEPQRYPACAQMLPPNLS-PHAPWNYHYHCP------GSPDHQVPYGHDYPRAAYQQV 289
P PQ +LPP + P P H P +P Q+ GH P Y
Sbjct: 978 PVLPPQPMLPPQPVLPPQPALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAP---YAVD 1034
Query: 290 IQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERP---AQRDCSFPGLPRHQDQ--P 344
+ +P P+P A+V L P +L +P + P A S +P P
Sbjct: 1035 VAAQVPTVPVPPAAV--LSPPLPEVLLPAAPELLPQFPSSLATVSASVQSVPTQTATLLP 1092
Query: 345 HHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNP 385
PP G PG + CP P A+ +PP P
Sbjct: 1093 PANPP-LPGGPGIASPCPTVQLTVEPVQEEQASQDKPPGLP 1132
Score = 34.3 bits (77), Expect = 0.31
Identities = 50/177 (28%), Positives = 64/177 (36%), Gaps = 29/177 (16%)
Query: 224 PQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQV--PYGHDY 281
P LP L + P P +Y + A +LP +P P + P P V P+
Sbjct: 814 PPALP-DLPTATVPPVPPPQYFSPAVILPSLAAPLPPAS-----PALPLQAVKLPHPPGA 867
Query: 282 PRAAYQQVIQPALPGQ-PL-----PGASVRGLH------PVQKVILNYPSPWDQEERPAQ 329
P A + I P P PL PG + +H P Q V YP+ + P
Sbjct: 868 PLAMPCRTIVPNAPATIPLLAVAPPGVAALSIHSAVAQLPGQPV---YPAAF-----PQM 919
Query: 330 RDCSFPGLPRHQDQPHHQ-PPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNP 385
P P H Q PP A P +L L PQ PP P P+P P
Sbjct: 920 APTDVPPSPHHTVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRPP 976
Score = 29.6 bits (65), Expect = 7.7
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 141 LVSQLSAASPDTGHDSDKSD--------QSLPNASADSLGGSQEMVQRPQPHRNRAGL 190
LV QL + TGH +D S Q+ +ADS G S + VQ QP RA L
Sbjct: 1963 LVRQLKVVASSTGHLADSSRGPPAKDPAQASVGLTADSTGLSGKAVQTQQPCSVRASL 2020
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 45.8 bits (107), Expect = 1e-04
Identities = 44/141 (31%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 251 LPPNLSP--HAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLH 308
LPP P H P++ H + P P VP P + I P PG P P +
Sbjct: 461 LPPAYGPPAHLPYHPHVYPPNPPPPPVP---PPPASFPPPAIPPPTPGYPPPPPTYNP-- 515
Query: 309 PVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQ 368
N+P P P LP P H PP G P S PA P
Sbjct: 516 -------NFPPPP-------------PRLPPTHAVPPHPPPG-LGLPPASYPPPAV--PP 552
Query: 369 VPQPPSPAAVPRPPSNPPARG 389
QPP P +P PP PP G
Sbjct: 553 GGQPPVPPPIP-PPGMPPVGG 572
Score = 33.9 bits (76), Expect = 0.41
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 22/122 (18%)
Query: 295 PGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAG- 353
P Q S++ V +V + PS + +P Q+D P P Q QP QP +
Sbjct: 270 PHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQKD---PQQPAQQQQPAQQPKKPSPQ 326
Query: 354 -------------APGESLECPAELRPQVPQ-----PPSPAAVPRPPSNPPARGTLKTSN 395
+P E + P++P+ PP P A P P PP L +
Sbjct: 327 PSSPRQVKRAVVVSPKEENKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPPLAAALGEAE 386
Query: 396 LP 397
P
Sbjct: 387 PP 388
Score = 30.8 bits (68), Expect = 3.5
Identities = 46/180 (25%), Positives = 58/180 (32%), Gaps = 43/180 (23%)
Query: 213 ERPLPLTSVCYPQDLPRPLRSREFP--QFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGS 270
+R PL + + P P+ + + P Q P +PA PP PH P P
Sbjct: 373 DRKPPLAAALGEAEPPGPVDATDLPKVQIPPPAHPAPVHQPPP--LPHRP-------PPP 423
Query: 271 PDHQVPYG----HDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEER 326
P G Y Q +Q + + G S L P Y P
Sbjct: 424 PPSSYMTGMSTTSSYMSGEGYQSLQSMMKTE---GPSYGALPPA------YGPP------ 468
Query: 327 PAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPP 386
LP H PH PPN P PA P PP+P P PP+ P
Sbjct: 469 --------AHLPYH---PHVYPPNPPPPPVPPP--PASFPPPAIPPPTPGYPPPPPTYNP 515
Score = 30.4 bits (67), Expect = 4.5
Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 26/166 (15%)
Query: 252 PPNL--SPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPAL-PGQPLPGASVRGLH 308
PP+L +P P S + P D + A QQ QPA P +P P S
Sbjct: 276 PPSLQPTPQVPQVQQSQPSQSSEPSQPQQKDPQQPAQQQ--QPAQQPKKPSPQPS--SPR 331
Query: 309 PVQKVILNYPSPWDQEERPA-----QRDCSFPGLPRHQDQPHHQPPNRAGA--------- 354
V++ ++ P ++ P + + + P LP P +PP A
Sbjct: 332 QVKRAVVVSPKEENKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPPLAAALGEAEPPGPV 391
Query: 355 -----PGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSN 395
P + PA P PP P P PP + G TS+
Sbjct: 392 DATDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYMTGMSTTSS 437
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 45.4 bits (106), Expect = 1e-04
Identities = 82/305 (26%), Positives = 112/305 (36%), Gaps = 49/305 (16%)
Query: 112 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKS--DQSLPNASAD 169
AV EP + P E +F+ E L + S S TG+DSD ++ P + A
Sbjct: 429 AVIEPIIQHADWFFPEEVEFNVSEAFVP-LTTPSSNHSFHTGNDSDSGTLERKRPASMAV 487
Query: 170 SLGGSQEMVQRPQPHRNRA------GLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVC- 222
G + P+P + G + I +G +QPQ G QL P +
Sbjct: 488 MEGDLVKKESPPKPKDPVSAAVPAPGRNNSQIASG-QNQPQAAAGSHQLSMGQPHNAAGP 546
Query: 223 YPQDLPR----PLRSREFPQFEPQRYP-----ACAQMLPPNLSPHAPWNYHYHCPGSPDH 273
P L R P + P P +P + PP+LSP P SP
Sbjct: 547 SPHTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTR-------SPSP 599
Query: 274 QVPYGHDYPRAAYQQVIQPALPGQ-PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDC 332
+ P QP+ P Q P L P+Q N+P P + P Q
Sbjct: 600 PTQHTGQPPG-------QPSAPSQLSAPRRYSSSLSPIQAP--NHPPP----QPPTQ--- 643
Query: 333 SFPGLPRHQDQPHHQ-PPNRAGAPGE-SLECPAELRPQVPQPPSPAAVPRPPSNPPARGT 390
P +P+ Q PPN P E LE P+ PQ P PPS + + + PA T
Sbjct: 644 ---ATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQT 700
Query: 391 LKTSN 395
L N
Sbjct: 701 LAGGN 705
>gi|27502386 nuclear factor of activated T-cells, cytosolic
component 1 isoform C [Homo sapiens]
Length = 930
Score = 43.5 bits (101), Expect = 5e-04
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 30/193 (15%)
Query: 231 LRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVI 290
+++ +EP P C + LSP Y PD +P + +
Sbjct: 688 IKTEPTDDYEPA--PTCGPV-SQGLSPLPRPYYSQQLAMPPDPSSCLVAGFPPCPQRSTL 744
Query: 291 QPALPGQP------LPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQP 344
PA PG P A +G+ L P P E PA +D P + H P
Sbjct: 745 MPAAPGVSPKLHDLSPAAYTKGVASPGHCHLGLPQP--AGEAPAVQDVPRP-VATHPGSP 801
Query: 345 HHQPP----NRAGAPGESLECPAELR----PQVPQPPSPAAVPRP-------PSNPPARG 389
PP + AP S CP L P P PP P A P P+ PPA G
Sbjct: 802 GQPPPALLPQQVSAPPSS-SCPPGLEHSLCPSSPSPPLPPATQEPTCLQPCSPACPPATG 860
Query: 390 TLKTSNLPEELRK 402
+ +LP +R+
Sbjct: 861 --RPQHLPSTVRR 871
Score = 31.2 bits (69), Expect = 2.6
Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 21/151 (13%)
Query: 215 PLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQ 274
P P QD+PRP+ + +P Q+ P S P H CP SP
Sbjct: 778 PQPAGEAPAVQDVPRPVATHPGSPGQPPPALLPQQVSAPPSSSCPPGLEHSLCPSSPSPP 837
Query: 275 VPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSF 334
+P P +QP P P A+ R H PS ++E P
Sbjct: 838 LP-----PATQEPTCLQPCSPA--CPPATGRPQH--------LPSTVRRDESPTAGPRLL 882
Query: 335 PGLPRHQDQPHHQPPNRAGAPGESLECPAEL 365
P + H+D PN A P P EL
Sbjct: 883 PEV--HED----GSPNLAPIPVTVKREPEEL 907
>gi|33356556 amelogenin (X chromosome) isoform 3 precursor [Homo
sapiens]
Length = 205
Score = 42.7 bits (99), Expect = 9e-04
Identities = 38/134 (28%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 257 PHAPWNYHYHCP-----GSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQ 311
P W +H P P H + H P QQ + P P P+PG + P+Q
Sbjct: 70 PMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVIPQQPMMPVPGQ--HSMTPIQ 127
Query: 312 KVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQ 371
N P P Q +P P P+ QPP P L PQ P
Sbjct: 128 HHQPNLPPPAQQPYQPQ------PVQPQPHQPMQPQPPVHPMQP---------LPPQPPL 172
Query: 372 PPSPAAVPRPPSNP 385
PP P PP P
Sbjct: 173 PPMFPMQPLPPMLP 186
>gi|33356558 amelogenin (X chromosome) isoform 2 precursor [Homo
sapiens]
Length = 175
Score = 42.7 bits (99), Expect = 9e-04
Identities = 38/134 (28%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 257 PHAPWNYHYHCP-----GSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQ 311
P W +H P P H + H P QQ + P P P+PG + P+Q
Sbjct: 40 PMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVIPQQPMMPVPGQ--HSMTPIQ 97
Query: 312 KVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQ 371
N P P Q +P P P+ QPP P L PQ P
Sbjct: 98 HHQPNLPPPAQQPYQPQ------PVQPQPHQPMQPQPPVHPMQP---------LPPQPPL 142
Query: 372 PPSPAAVPRPPSNP 385
PP P PP P
Sbjct: 143 PPMFPMQPLPPMLP 156
>gi|4502071 amelogenin (X chromosome) isoform 1 precursor [Homo
sapiens]
Length = 191
Score = 42.7 bits (99), Expect = 9e-04
Identities = 38/134 (28%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 257 PHAPWNYHYHCP-----GSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQ 311
P W +H P P H + H P QQ + P P P+PG + P+Q
Sbjct: 56 PMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVIPQQPMMPVPGQ--HSMTPIQ 113
Query: 312 KVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQ 371
N P P Q +P P P+ QPP P L PQ P
Sbjct: 114 HHQPNLPPPAQQPYQPQ------PVQPQPHQPMQPQPPVHPMQP---------LPPQPPL 158
Query: 372 PPSPAAVPRPPSNP 385
PP P PP P
Sbjct: 159 PPMFPMQPLPPMLP 172
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 42.7 bits (99), Expect = 9e-04
Identities = 66/256 (25%), Positives = 90/256 (35%), Gaps = 60/256 (23%)
Query: 145 LSAASPDTGHDSDK--SDQSLPNASADSLGGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQ 202
+SAA P G ++ + S Q+ P A+A S + QPH N AG T+
Sbjct: 583 VSAAVPAPGRNNSQIASGQNQPQAAAGS-----HQLSMGQPH-NAAGPSPHTLR------ 630
Query: 203 PQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWN 262
R +++P P P P ++P PP SP P
Sbjct: 631 -------RAVKKPAPAPP---KPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQ 680
Query: 263 YHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQ-PLPGASVRGLHPVQKVILNYPSPW 321
+ PG QP+ P Q P L P+Q N+P P
Sbjct: 681 HTGQPPG---------------------QPSAPSQLSAPRRYSSSLSPIQAP--NHPPP- 716
Query: 322 DQEERPAQRDCSFPGLPRHQDQPHHQ-PPNRAGAPGE-SLECPAELRPQVPQPPSPAAVP 379
+ P Q P +P+ Q PPN P E LE P+ PQ P PPS +
Sbjct: 717 ---QPPTQ------ATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTPPLG 767
Query: 380 RPPSNPPARGTLKTSN 395
+ + PA TL N
Sbjct: 768 KQNPSLPAPQTLAGGN 783
>gi|148277037 AP2 associated kinase 1 [Homo sapiens]
Length = 961
Score = 42.4 bits (98), Expect = 0.001
Identities = 60/241 (24%), Positives = 88/241 (36%), Gaps = 46/241 (19%)
Query: 185 RNRAGLDLPTIDTGYDSQPQDVLGIRQLE------RPLPLTSVCYPQDLPRPLRSREFPQ 238
R RA + P G +QP + + Q + +PLP T PQ P P ++ P
Sbjct: 391 RKRATVQPPPQAAGSSNQPGLLASVPQPKPQAPPSQPLPQTQAKQPQAPPTP---QQTPS 447
Query: 239 FEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQ----QVIQPAL 294
+ Q PA AQ P + P Q P G Y + Q Q + PA
Sbjct: 448 TQAQGLPAQAQATPQHQQQLFLKQQQQQQQPPPAQQQPAGTFYQQQQAQTQQFQAVHPAT 507
Query: 295 PGQP----LPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQ--------- 341
QP P S G Q+++ N+ Q+++ Q+ L + Q
Sbjct: 508 Q-QPAIAQFPVVSQGGSQ--QQLMQNFYQQQQQQQQQQQQQQLATALHQQQLMTQQAALQ 564
Query: 342 --------DQPHHQP---PNRAGAPGESLECPAELRPQVPQPPSPAAVPR------PPSN 384
QP QP P A A +++ P +P+V P PA + PPS+
Sbjct: 565 QKPTMAAGQQPQPQPAAAPQPAPAQEPAIQAPVRQQPKVQTTPPPAVQGQKVGSLTPPSS 624
Query: 385 P 385
P
Sbjct: 625 P 625
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 42.4 bits (98), Expect = 0.001
Identities = 53/195 (27%), Positives = 66/195 (33%), Gaps = 47/195 (24%)
Query: 225 QDLPRPLRSREFPQFEPQ-RYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPR 283
Q LP P +SR Q P P A + + PH + + PGS + + P
Sbjct: 260 QPLPTPAQSRNTAQASPAGAKPGIADSV---MEPHKKGDGNSSVPGSMEGRAGLSRTVPA 316
Query: 284 AAYQQVIQPAL----PGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPR 339
A +I PA P Q LP S + L P Q VI P P Q+ P Q P
Sbjct: 317 VAAHPLIAPAYAQLQPHQLLPQPSSKHLQP-QFVIQQQPQPQQQQPPPQQ------SRPV 369
Query: 340 HQDQPHHQ-----------PPNRAGA---------------------PGESLECPAELRP 367
Q +PH Q P + A A PG S +C
Sbjct: 370 LQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPALPLQCPTANLHKPGGSQQCHPPTPD 429
Query: 368 QVPQPPSPAAVPRPP 382
PQ P VP P
Sbjct: 430 TGPQNGHPEGVPHTP 444
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 42.0 bits (97), Expect = 0.001
Identities = 53/199 (26%), Positives = 69/199 (34%), Gaps = 24/199 (12%)
Query: 215 PLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAP-------WNYHYHC 267
P P+ + PQ P+PL + P P Q PP +P P + Y
Sbjct: 766 PPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIP 825
Query: 268 PGSPDHQVPYGHDYPRAAYQQVIQPALPGQPL-PGASVRGLHPVQKVILNYPSP------ 320
P P VP P QQ P PL P SV V+++ +P P
Sbjct: 826 PSPPTPPVPVPP--PTLPKQQSFCAKPPPSPLSPVPSV-----VKQIASQFPPPPTPPAM 878
Query: 321 WDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQV--PQPPSPAAV 378
Q +P + + P + +P QP + P P V P PPSP
Sbjct: 879 ESQPLKPVPANVAPQSPPAVKAKPKWQPSS-IPVPSPDFPPPPPESSLVFPPPPPSPVPA 937
Query: 379 PRPPSNPPARGTLKTSNLP 397
P PP P A T S P
Sbjct: 938 PPPPPPPTASPTPDKSGSP 956
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 337 LPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNL 396
+P QP P A P L P P P PP P P P + P+ G+
Sbjct: 606 VPPLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGS------ 659
Query: 397 PEELRKVFITYSMDTAME 414
+F+ YS T ++
Sbjct: 660 ---AAPMFVKYSTITRLQ 674
Score = 30.4 bits (67), Expect = 4.5
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 28/95 (29%)
Query: 292 PALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNR 351
P P P PG+++ L P C+ P LP+ P PP +
Sbjct: 713 PPPPPPPTPGSAMAQLKPAP--------------------CA-PSLPQFSAPP---PPLK 748
Query: 352 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPP 386
++ ++ P P PP P P PP PP
Sbjct: 749 I----HQVQHITQVAPPTPPPPPPIPAPLPPQAPP 779
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.2 bits (95), Expect = 0.003
Identities = 54/218 (24%), Positives = 74/218 (33%), Gaps = 43/218 (19%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P+P RNR P + + DS P P+P T PRP++S +
Sbjct: 162 PEPQRNRMPPPRPDVGSKPDSIPP----------PVPST--------PRPIQSSPHNRGS 203
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 300
P Q P P P N G Q P P + +P LP P P
Sbjct: 204 PPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSN-----RPPLP--PTP 256
Query: 301 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 360
++ P P P RP+ + P P ++P P P S +
Sbjct: 257 SRALDDKPP--------PPPPPVGNRPSIHREAVPPPPPQNNKP---PVPSTPRPSASSQ 305
Query: 361 CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPE 398
P P PP P+ PP P + G +T LP+
Sbjct: 306 AP-------PPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.2 bits (95), Expect = 0.003
Identities = 54/218 (24%), Positives = 74/218 (33%), Gaps = 43/218 (19%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P+P RNR P + + DS P P+P T PRP++S +
Sbjct: 162 PEPQRNRMPPPRPDVGSKPDSIPP----------PVPST--------PRPIQSSPHNRGS 203
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 300
P Q P P P N G Q P P + +P LP P P
Sbjct: 204 PPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSN-----RPPLP--PTP 256
Query: 301 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 360
++ P P P RP+ + P P ++P P P S +
Sbjct: 257 SRALDDKPP--------PPPPPVGNRPSIHREAVPPPPPQNNKP---PVPSTPRPSASSQ 305
Query: 361 CPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPE 398
P P PP P+ PP P + G +T LP+
Sbjct: 306 AP-------PPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 41.2 bits (95), Expect = 0.003
Identities = 53/195 (27%), Positives = 68/195 (34%), Gaps = 36/195 (18%)
Query: 224 PQDLPRP----LRSREFPQFEPQRYPACAQMLPPNLSP--------HAPWNYHYHCPGSP 271
P+D +P LR R F Q Q PP P H+ Y P
Sbjct: 765 PRDCAQPPVQQLRDR---LFHAQGSAVLGQQSPPFPFPRIVVGATLHSKETSSYRLGSQP 821
Query: 272 DHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRD 331
HQVP PR Q PA+P P + +G P + I +Y +P Q +P
Sbjct: 822 SHQVPTPSPRPRVFTPQ-SSPAMPLAPSHPSPYQG--PRTQNISDYRAPGPQAIQPLPLS 878
Query: 332 CSFPGLPRHQDQP------HHQPPNRAGAPGE--------SLECPAELRP-QVPQPPSPA 376
PG+ QP Q PN G PG + CP +RP P +P
Sbjct: 879 ---PGVRPASSQPQLLGGQRVQVPNPVGFPGTWPLPGSPLPMACPGIMRPGSTSLPETPR 935
Query: 377 AVPRPPSNPPARGTL 391
P P P G +
Sbjct: 936 LFPLLPLRPLGPGRM 950
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 40.8 bits (94), Expect = 0.003
Identities = 48/180 (26%), Positives = 68/180 (37%), Gaps = 33/180 (18%)
Query: 217 PLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCP-GSPDHQV 275
PL S+ +P PL S P P ++ P SP +P HCP SP + +
Sbjct: 50 PLVSLHHPVSPHFPLVSPHHPLMSPHY-----SLVSPQYSPVSP-----HCPLVSPHYSL 99
Query: 276 PYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPS-PWDQEERPAQRDCSF 334
H + ++ P L G P P + V L + PS P D P+
Sbjct: 100 VSPH-------RPLVSPLLSGVPSPPSDVPSL------LSGVPSLPSDVSSPPSDVPSLL 146
Query: 335 PGLPRHQDQPHHQPPNRAGAPGESLECPAE---LRPQVPQPPS-----PAAVPRPPSNPP 386
+P P + P + P++ L VP PPS P+ VP PPS+ P
Sbjct: 147 SDVPSLLSGVPSPPSDVPSPPSDVPSPPSDVPSLLSGVPSPPSDVPSPPSDVPSPPSDVP 206
Score = 36.2 bits (82), Expect = 0.082
Identities = 67/270 (24%), Positives = 91/270 (33%), Gaps = 56/270 (20%)
Query: 141 LVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQRPQPHRNRAGLDLPTIDTGYD 200
LVS L + P D +P+ +D V P D+P++ +G
Sbjct: 106 LVSPLLSGVPSPPSDVPSLLSGVPSLPSD--------VSSPPSDVPSLLSDVPSLLSGVP 157
Query: 201 SQPQDVLGIRQLERPLPLTSV-CYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHA 259
S P DV P P + V P D+P L P P P+ PP+ P
Sbjct: 158 SPPSDV--------PSPPSDVPSPPSDVPSLLSGVPSP---PSDVPS-----PPSDVPSP 201
Query: 260 PWNYHYHCP-GSPDHQVPYGHDYPRAAYQQVIQPA----LPGQPLPGASVRGLHPVQKVI 314
P + SP VP D P P+ L G P P + V L +
Sbjct: 202 PSDVPLLSDVPSPPSDVPLLSDVPSPPSDVPSLPSDVPSLSGVPSPPSDVPSL------L 255
Query: 315 LNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRP------Q 368
PSP P+ +P P P +G P + P+ L
Sbjct: 256 SGVPSPPSDISPPSDVPSLLSDVP---SLPSDVPSLLSGVPSPPSDVPSLLSDVPSPPSD 312
Query: 369 VPQPPS-----------PAAVPRPPSNPPA 387
VP PPS P+ VP PPS+ P+
Sbjct: 313 VPSPPSDIPLLSGVPSPPSDVPSPPSDVPS 342
Score = 32.3 bits (72), Expect = 1.2
Identities = 54/216 (25%), Positives = 77/216 (35%), Gaps = 35/216 (16%)
Query: 191 DLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQM 250
D+P++ +G S P DV + P P + V D+P P P P+
Sbjct: 176 DVPSLLSGVPSPPSDVPSPPS-DVPSPPSDVPLLSDVPSPPSDVPLLSDVPSP-PSDVPS 233
Query: 251 LP---PNLS--PHAPWNYHYHCPG--SPDHQVPYGHDYPRAAYQQVIQPA-----LPGQP 298
LP P+LS P P + G SP + D P P+ L G P
Sbjct: 234 LPSDVPSLSGVPSPPSDVPSLLSGVPSPPSDISPPSDVPSLLSDVPSLPSDVPSLLSGVP 293
Query: 299 LPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGES 358
P + V L + + PSP P G+P PP+ +P
Sbjct: 294 SPPSDVPSL------LSDVPSPPSDVPSPPSDIPLLSGVP--------SPPSDVPSPPSD 339
Query: 359 LECPAELRPQVPQPPSP-------AAVPRPPSNPPA 387
+ P P + PSP + VP PPS+ P+
Sbjct: 340 VPSPPSDVPLLSGVPSPLSDVPLLSGVPSPPSDVPS 375
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 40.8 bits (94), Expect = 0.003
Identities = 54/207 (26%), Positives = 78/207 (37%), Gaps = 38/207 (18%)
Query: 208 GIRQLERPLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLS---PHAPWNYH 264
G R+ P P + +P+ +P+ S PQ++ A PP +S PH P
Sbjct: 304 GAREPPPPAPAPAHHHPEYQGQPVVSHPHHIMPPQQHYAPPPPPPPPISHPMPHPP---- 359
Query: 265 YHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQE 324
G+P H V Y +A + P P PG + + P +N+P P
Sbjct: 360 -QAAGTP-HLV-----YSQAPPPPMTSAPPPITPPPGHIIAQMPP----YMNHPPPGPP- 407
Query: 325 ERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQP--------PSPA 376
P Q G P PHH PN + + E L P QP P+P
Sbjct: 408 --PPQHG----GPPVTAPPPHHYNPN---SLPQFTEDQGTLSPPFTQPGGMSPGIWPAPR 458
Query: 377 AVPRPP--SNPPARGTLKTSNLPEELR 401
P PP PP++ L + P++ R
Sbjct: 459 GPPPPPRLQGPPSQTPLPGPHHPDQTR 485
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 40.4 bits (93), Expect = 0.004
Identities = 86/389 (22%), Positives = 130/389 (33%), Gaps = 81/389 (20%)
Query: 14 PYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDFSQAHSTLKLANHQ 73
P P + P E + P P +P S P + + + A ++ Q
Sbjct: 768 PPPEDIPAPTEPTPASEATGAPTPPPAPPSP-SAPPPVVPKEEKEEETAAAPPVEEGEEQ 826
Query: 74 RPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASESVVGALPAEHQFSF 133
+P + + + T E+ S C G A G A E A + GAL AE
Sbjct: 827 KPPAAEELAVDTGKAEEPVKSECTEEAEEGPA--KGKDA--EAAEATAEGALKAE----- 877
Query: 134 MEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQRPQPHRNRAGLDLP 193
K+ +A S DSD S + ++ GG + + P+P L P
Sbjct: 878 --KKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP-----SLLTP 930
Query: 194 TIDTGYDSQPQDVLGIRQLER------PLPLTSVCYPQDLPRPLRSREFPQFEPQRYPAC 247
T D ++ PQ L ++QL++ P+ +T V P P+ A
Sbjct: 931 TGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEP----------------PREDAAP 974
Query: 248 AQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGL 307
+ PP +P P N +QP PG+S RG
Sbjct: 975 TKPAPP--APPPPQN---------------------------LQPESDAPQQPGSSPRG- 1004
Query: 308 HPVQKVILNYPSPWDQEERPAQRDCSFPGLPRH-QDQPHHQPPNRAGAPGESLECPAELR 366
SP ++ A++ FP Q P P +G P P E+
Sbjct: 1005 --------KSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLPFP--VPPREVI 1054
Query: 367 PQVPQPPSPAAVP-RPPSNPPARGTLKTS 394
P P P+A PP +P G T+
Sbjct: 1055 KASPHAPDPSAFSYAPPGHPLPLGLHDTA 1083
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 40.4 bits (93), Expect = 0.004
Identities = 93/429 (21%), Positives = 141/429 (32%), Gaps = 66/429 (15%)
Query: 5 IPVEVDESEPYPSQLLKPIPEYSPEEESEPPA------PNIRNMAPNSLSAPTMLHNSSG 58
IP + PS + PI P +++ P + P + + P S P + +
Sbjct: 364 IPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPA- 422
Query: 59 DFSQAHSTLKLANHQRPVSRQVTCLR-----TQVLEDSEDSFCRRHPGLGKAFPSGCSAV 113
++P+ R R T+ L + S + P L + S
Sbjct: 423 --------------EKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHA 468
Query: 114 SEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGG 173
S+PAS P +S A +P + + +P S S
Sbjct: 469 SKPASARTSTHKPPPFT----------ALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPR 518
Query: 174 SQEMVQRPQPHRNRAGLDLP-----TIDTGYDSQPQDVLGIR--QLERPLPLTSVCYPQD 226
+ V P P G P + G S P+ + +R + R +PL+ +
Sbjct: 519 TAPAV--PTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLT---T 573
Query: 227 LPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAY 286
P P + + Q P A AQ L + P + +H GS + G P+
Sbjct: 574 RPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDC 633
Query: 287 QQVIQPALPGQP-LPGASVRGLHPVQKVILNYPSP---WDQEERP----------AQRDC 332
P LPG P +PGA P P P Q+ P A+ D
Sbjct: 634 GLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDM 693
Query: 333 SFPGLPRHQDQP----HHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPAR 388
PGL + P H P AG PGE + E P P +P P +P +
Sbjct: 694 GLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPK 753
Query: 389 GTLKTSNLP 397
G+ LP
Sbjct: 754 GSRGYIGLP 762
Score = 30.4 bits (67), Expect = 4.5
Identities = 42/145 (28%), Positives = 48/145 (33%), Gaps = 35/145 (24%)
Query: 268 PGSPDHQVPYGHDYP---RAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQE 324
PG P Q P G P R A + P P P RGL P P +
Sbjct: 1041 PGEPGPQGPPGSRGPPGMRGAKGRR-GPRGPDGPAGEQGSRGLK-------GPPGPQGRP 1092
Query: 325 ERPAQRDCS----------FPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPS 374
RP Q+ + FPG+P PP G PGE PQ PQ P
Sbjct: 1093 GRPGQQGVAGERGHLGSRGFPGIPGPSG-----PPGTKGLPGEP-------GPQGPQGPI 1140
Query: 375 PAAVPRPPSNPPARGTLKTSNLPEE 399
P PP G + LP E
Sbjct: 1141 GPPGEMGPKGPP--GAVGEPGLPGE 1163
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 319 SPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAV 378
SPW Q +P C G P H PHH PP+ P ++L CP R Q A+
Sbjct: 248 SPWTQLAQPLGPPCQDTG-PTHYPPPHHPPPH----PPQALPCPPACRHPEKQGSYSPAL 302
Query: 379 PRPP 382
P P
Sbjct: 303 PLQP 306
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 40.4 bits (93), Expect = 0.004
Identities = 38/131 (29%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 268 PGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERP 327
PG P+ P G + + P PG+P G +G + Q P P E P
Sbjct: 180 PGKPEGPPPQGGNQSQGP------PPRPGKP-EGPPPQGGNQSQGPP---PRPGKPEGPP 229
Query: 328 AQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPS---------PAAV 378
+Q G P H +P PP P P RPQ P PP PA
Sbjct: 230 SQGGNKPQGPPPHPGKPQGPPPQEGNKPQRP---PPPGRPQGPPPPGGNPQQPLPPPAGK 286
Query: 379 PRPPSNPPARG 389
P+ P PP G
Sbjct: 287 PQGPPPPPQGG 297
Score = 35.4 bits (80), Expect = 0.14
Identities = 41/151 (27%), Positives = 52/151 (34%), Gaps = 27/151 (17%)
Query: 268 PGSPDHQVPYGHDY---------------PRAAYQQVIQPALPGQPLPGASVRGLHPVQK 312
PG P+ Q P G + P+ Q P PG+P G +G + Q
Sbjct: 96 PGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKP-EGPPPQGGNQSQG 154
Query: 313 VILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQP 372
P P E P Q G P H +P PP G P +P+ P P
Sbjct: 155 PP---PRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQ--GGNQSQGPPPRPGKPEGPPP 209
Query: 373 ----PSPAAVPRP--PSNPPARGTLKTSNLP 397
S PRP P PP++G K P
Sbjct: 210 QGGNQSQGPPPRPGKPEGPPSQGGNKPQGPP 240
Score = 32.7 bits (73), Expect = 0.91
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 269 GSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPA 328
G P+ + P G + P+ P PG+P G +G + Q P P E P
Sbjct: 34 GKPEGRRPQGGNQPQRT------PPPPGKP-EGRPPQGGNQSQGPP---PRPGKPEGPPP 83
Query: 329 QRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQP----PSPAAVPRP--P 382
Q G P +P QPP G P +P+ P P S PRP P
Sbjct: 84 QGGNQSQGPPPRPGKPEGQPPQ--GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKP 141
Query: 383 SNPPARGTLKTSNLP 397
PP +G ++ P
Sbjct: 142 EGPPPQGGNQSQGPP 156
Score = 32.7 bits (73), Expect = 0.91
Identities = 33/119 (27%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 268 PGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERP 327
PG P+ P G + + P PG+P S G P P P + P
Sbjct: 201 PGKPEGPPPQGGNQSQGP------PPRPGKPEGPPSQGGNKPQGPP----PHPGKPQGPP 250
Query: 328 AQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPP 386
Q + P P +P PP G P + L PA P PP RPP P
Sbjct: 251 PQEG-NKPQRPPPPGRPQGPPPP-GGNPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQP 307
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 40.0 bits (92), Expect = 0.006
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 294 LPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAG 353
LPG L A + G+ P + P+P ERPA S QP + P G
Sbjct: 35 LPGPALVVAGLDGIRPAPAAA-HPPAP---RERPAAARLSALAAA----QPRRRSPGPQG 86
Query: 354 APGESLECPAELR------PQVPQPPSPAAVPRPPSNPPARGTL 391
G + P P VP PSP +P PS+PP R +L
Sbjct: 87 GGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSL 130
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 40.0 bits (92), Expect = 0.006
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 294 LPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAG 353
LPG L A + G+ P + P+P ERPA S QP + P G
Sbjct: 35 LPGPALVVAGLDGIRPAPAAA-HPPAP---RERPAAARLSALAAA----QPRRRSPGPQG 86
Query: 354 APGESLECPAELR------PQVPQPPSPAAVPRPPSNPPARGTL 391
G + P P VP PSP +P PS+PP R +L
Sbjct: 87 GGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSL 130
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 40.0 bits (92), Expect = 0.006
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 333 SFPGLPRHQDQPHHQPPNRAGA-PGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTL 391
S P PR + +P QP R+ + PG S P RP P PP P PRP + +R
Sbjct: 95 SSPVCPRRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRS 154
Query: 392 KTSNLPEELR 401
+ + P+ R
Sbjct: 155 RPGSRPQTRR 164
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 335 PGLPRHQDQPHHQPPNRAGAPGE-----SLECPAELRPQVPQPPSP----AAVPRPPSNP 385
PGLP Q+ P PP PG + P +L P P PP P VP PP P
Sbjct: 549 PGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPP 608
Query: 386 P 386
P
Sbjct: 609 P 609
Score = 31.6 bits (70), Expect = 2.0
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 327 PAQRDCSFPGLPRHQDQPHHQPPNRAGAPGES---------LECPAELRPQVPQ--PPSP 375
P+ D PG+P P P APG + L P E P P PP P
Sbjct: 511 PSGGDAPTPGVPTGSPSPDLAPAAEP-APGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLP 569
Query: 376 AAVPRPPSNPPARGTL 391
+ P PP PP G L
Sbjct: 570 GS-PEPPPAPPLPGDL 584
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 39.7 bits (91), Expect = 0.007
Identities = 38/117 (32%), Positives = 42/117 (35%), Gaps = 30/117 (25%)
Query: 292 PALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNR 351
P LPG LP A+ G P P EE+P P P P QPP
Sbjct: 1434 PPLPG--LPSANSNGT----------PEPPLLEEKP-------PPTPPPAPTPQPQPPPP 1474
Query: 352 AGAPGESLECPAEL---------RPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEE 399
P +L P L P +P PP PA PP PPA L PEE
Sbjct: 1475 PPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAP--PEE 1529
Score = 29.6 bits (65), Expect = 7.7
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 335 PGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTS 394
PGLP +PP P + +PQ P PP P P PS PP +S
Sbjct: 1437 PGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQ-PPPPPPPPQPALPSPPPLVAPTPSS 1495
Query: 395 NLPEEL 400
P L
Sbjct: 1496 PPPPPL 1501
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 39.3 bits (90), Expect = 0.010
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 268 PGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERP 327
PG P P G PR P PG P PG Q + P ++ +RP
Sbjct: 223 PGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPG---------QVLPPPLAGPPNRGDRP 273
Query: 328 AQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPP 386
FPG QP QPP PG P P P PP P P PP
Sbjct: 274 PP-PVLFPG------QPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPP 325
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 39.3 bits (90), Expect = 0.010
Identities = 61/226 (26%), Positives = 75/226 (33%), Gaps = 27/226 (11%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERP---LPLTSVCYPQDLPR-------P 230
P P G+ +PT+ + QP + G L P LP + P LP P
Sbjct: 877 PPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPP 936
Query: 231 LRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVI 290
L P P P A PP L P A PG+ +P P A
Sbjct: 937 LPGAGIPP--PPPLPGAAIPPPPPL-PGAGIPLPPPLPGAG---IPPPPPLPGAGIPP-- 988
Query: 291 QPALPGQ------PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQP 344
P LPG PLPGA + P+ + P P P G+P P
Sbjct: 989 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1048
Query: 345 HHQPPNRAGAPGESLECPAELRPQVPQPPSP---AAVPRPPSNPPA 387
P PG + P L PP P A +P PP P A
Sbjct: 1049 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGA 1094
Score = 38.1 bits (87), Expect = 0.022
Identities = 62/229 (27%), Positives = 72/229 (31%), Gaps = 24/229 (10%)
Query: 176 EMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSRE 235
EM+ P P AG+ P G P L + P PL P P PL
Sbjct: 906 EMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPP--PPPLPGAG 963
Query: 236 FPQFEPQRYPACAQMLPPNLS-------PHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQ 288
P P P PP L P P P P +P P A
Sbjct: 964 IPL--PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1021
Query: 289 VIQPALPGQ------PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQD 342
P LPG PLPGA + P+ + P P P G+P
Sbjct: 1022 --PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1079
Query: 343 QPHHQPPNRAGAPGESLECPAELRPQVPQPPSP----AAVPRPPSNPPA 387
P P PG + P L P V PP P A +P PP P A
Sbjct: 1080 LPGAGIPPPPPLPGAGIPPPPPL-PGVGIPPPPPLPGAGIPPPPPLPGA 1127
Score = 35.8 bits (81), Expect = 0.11
Identities = 57/221 (25%), Positives = 68/221 (30%), Gaps = 34/221 (15%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P P AG+ P G P L + P PL V P P PL P
Sbjct: 1065 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPP--PPPLPGAGIPP-- 1120
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQPLP 300
P P PP L P +P PR P PLP
Sbjct: 1121 PPPLPGAGIPPPPPL---------------PGAGIPPPPPLPRVGIP-------PPPPLP 1158
Query: 301 GASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLE 360
GA + P+ + P P P G+P P P PG +
Sbjct: 1159 GAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIP 1218
Query: 361 CPAELRPQVPQPPSPAAVPRPP----SNPPARGTLKTSNLP 397
PA P P PP +P PP S PP + +S LP
Sbjct: 1219 -PA---PAPPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLP 1255
Score = 34.3 bits (77), Expect = 0.31
Identities = 55/214 (25%), Positives = 64/214 (29%), Gaps = 30/214 (14%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P P AG+ LP G P L + P PL P P PL P
Sbjct: 955 PPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP--PPPLPGAGIPP-- 1010
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQ--- 297
P P PP L P +P P A P LPG
Sbjct: 1011 PPPLPGAGIPPPPPL---------------PGAGIPPPPPLPGAGIPP--PPPLPGAGIP 1053
Query: 298 ---PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGA 354
PLPGA + P+ + P P P G+P P P
Sbjct: 1054 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPL 1113
Query: 355 PGESLECPAELRPQVPQPPSP---AAVPRPPSNP 385
PG + P L PP P A +P PP P
Sbjct: 1114 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1147
Score = 33.1 bits (74), Expect = 0.70
Identities = 60/217 (27%), Positives = 70/217 (32%), Gaps = 32/217 (14%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P P AG+ P G P L + P PL P P PL P
Sbjct: 977 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP--PPPLPGAGIPP-- 1032
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQ--- 297
P P PP L P P P +P P A P LPG
Sbjct: 1033 PPPLPGAGIPPPPPL----PGAGIPPPPPLPGAGIPPPPPLPGAGIPP--PPPLPGAGIP 1086
Query: 298 ---PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGA 354
PLPGA + P+ V + P P P G+P PP
Sbjct: 1087 PPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIP---------PP--PPL 1135
Query: 355 PGESLECPAELRPQVPQPPSP----AAVPRPPSNPPA 387
PG + P L P+V PP P A +P PP P A
Sbjct: 1136 PGAGIPPPPPL-PRVGIPPPPPLPGAGIPPPPPLPGA 1171
Score = 33.1 bits (74), Expect = 0.70
Identities = 57/215 (26%), Positives = 67/215 (31%), Gaps = 21/215 (9%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P P AG+ P G P L + P PL P P PL P
Sbjct: 1010 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP--PPPLPGAGIPP-- 1065
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQ--- 297
P P PP L P P P +P P P LPG
Sbjct: 1066 PPPLPGAGIPPPPPL----PGAGIPPPPPLPGAGIPPPPPLPGVGIPP--PPPLPGAGIP 1119
Query: 298 ---PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGA 354
PLPGA + P+ + P P + P G+P P P
Sbjct: 1120 PPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL 1179
Query: 355 PGESLECPAELRPQVPQPPSP----AAVPRPPSNP 385
PG + P L P V PP P A +P PP P
Sbjct: 1180 PGVGIPPPPPL-PGVGIPPPPPLPGAGIPPPPPLP 1213
Score = 30.4 bits (67), Expect = 4.5
Identities = 54/214 (25%), Positives = 63/214 (29%), Gaps = 19/214 (8%)
Query: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
P P AG+ P G P L + P PL P P PL P
Sbjct: 988 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP--PPPLPGAGIPP-- 1043
Query: 241 PQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQPALPGQ--- 297
P P PP L P P P +P P A P LPG
Sbjct: 1044 PPPLPGAGIPPPPPL----PGAGIPPPPPLPGAGIPPPPPLPGAGIPP--PPPLPGAGIP 1097
Query: 298 ---PLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNRAGA 354
PLPG + P+ + P P P G+P P P
Sbjct: 1098 PPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPL 1157
Query: 355 PGESLECPAELRPQVPQPPSP---AAVPRPPSNP 385
PG + P L PP P +P PP P
Sbjct: 1158 PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLP 1191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,748,903
Number of Sequences: 37866
Number of extensions: 1665466
Number of successful extensions: 14115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 477
Number of HSP's that attempted gapping in prelim test: 10991
Number of HSP's gapped (non-prelim): 2734
length of query: 565
length of database: 18,247,518
effective HSP length: 108
effective length of query: 457
effective length of database: 14,157,990
effective search space: 6470201430
effective search space used: 6470201430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.