Guide to the Human Genome
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Name: TRAF3IP2 Sequence: fasta or formatted (574aa) NCBI GI: 22538426
Description:

TRAF3 interacting protein 2 isoform 1

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [565aa] TRAF3 interacting protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         35           2
 C cysteine            1.4          8           1
 D aspartate           4.7         27           1
 E glutamate           6.6         38           3
 F phenylalanine       3.0         17           1
 G glycine             4.5         26           2
 H histidine           3.7         21           2
 I isoleucine          3.8         22           2
 K lysine              3.5         20           2
 L leucine             8.5         49           2
 M methionine          2.4         14           2
 N asparagine          3.8         22           1
 P proline            13.2         76           2
 Q glutamine           7.1         41           2
 R arginine            6.4         37           2
 S serine              8.0         46           2
 T threonine           3.3         19           1
 V valine              5.7         33           2
 W tryptophan          1.0          6           1
 Y tyrosine            3.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TRAF3 interacting protein 2 isoform 1 
TRAF3IP2              0.984   TRAF3 interacting protein 2 isoform 2 
CPEB3                 0.020   cytoplasmic polyadenylation element binding protein ...
WNK2                  0.018   WNK lysine deficient protein kinase 2 
CCNK                  0.018   cyclin K isoform 1 
ARHGAP17              0.017   nadrin isoform 2 
NFATC1                0.016   nuclear factor of activated T-cells, cytosolic compo...
AMELX                 0.015   amelogenin (X chromosome) isoform 3 precursor 
AMELX                 0.015   amelogenin (X chromosome) isoform 2 precursor 
AMELX                 0.015   amelogenin (X chromosome) isoform 1 precursor 
ARHGAP17              0.015   nadrin isoform 1 
AAK1                  0.015   AP2 associated kinase 1 
PHC2                  0.015   polyhomeotic-like 2 isoform a 
RAPH1                 0.015   Ras association and pleckstrin homology domains 1 is...
WIPF1                 0.014   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.014   WAS/WASL interacting protein family, member 1 
SEC31B                0.014   SEC31 homolog B 
LOC100134663          0.014   PREDICTED: hypothetical protein, partial 
CBLL1                 0.014   Cas-Br-M (murine) ecotropic retroviral transforming...
COL27A1               0.014   collagen, type XXVII, alpha 1 
NCOR2                 0.013   nuclear receptor co-repressor 2 isoform 2 
C15orf39              0.013   hypothetical protein LOC56905 
PRB3                  0.013   proline-rich protein BstNI subfamily 3 precursor [H...
LOC100131102          0.013   PREDICTED: hypothetical protein 
LOC100131102          0.013   PREDICTED: hypothetical protein 
USP51                 0.013   ubiquitin specific protease 51 
FMNL1                 0.013   formin-like 1 
PRR12                 0.013   proline rich 12 
CPSF6                 0.012   cleavage and polyadenylation specific factor 6, 68 ...
FMN2                  0.012   formin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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