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Search of human proteins with 115511032
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 723 0.0
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 655 0.0
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 655 0.0
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 655 0.0
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 655 0.0
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 645 0.0
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 582 e-166
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 575 e-164
gi|38201714 ELAV-like 1 [Homo sapiens] 491 e-139
gi|4506447 RNA binding motif, single stranded interacting protei... 126 3e-29
gi|8400718 RNA binding motif, single stranded interacting protei... 126 3e-29
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 121 1e-27
gi|51317355 RNA binding motif, single stranded interacting prote... 117 2e-26
gi|51317351 RNA binding motif, single stranded interacting prote... 117 2e-26
gi|51317353 RNA binding motif, single stranded interacting prote... 116 3e-26
gi|4506449 RNA binding motif, single stranded interacting protei... 113 3e-25
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 111 9e-25
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 110 3e-24
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 110 3e-24
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 110 3e-24
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 105 8e-23
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 102 7e-22
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 101 9e-22
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 100 2e-21
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 97 2e-20
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 93 4e-19
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 92 7e-19
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 92 7e-19
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 90 3e-18
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 89 8e-18
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 723 bits (1866), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60
METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
Sbjct: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60
Query: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
Sbjct: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD 240
EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
Sbjct: 181 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD 240
Query: 241 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 300
NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
Sbjct: 241 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 300
Query: 301 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
Sbjct: 301 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 655 bits (1689), Expect = 0.0
Identities = 324/360 (90%), Positives = 344/360 (95%), Gaps = 2/360 (0%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQEELKSLF 59
ME Q+SNGPT +NT+NGP++ N NC SP+ +G T+DSKTNLIVNYLPQNMTQEE +SLF
Sbjct: 11 MEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLF 69
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS
Sbjct: 70 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 129
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEA
Sbjct: 130 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 189
Query: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRL 239
EEAIKGLNGQKP GATEPITVKFANNPSQK++QA+LSQLYQSPNRRYPGPL QAQRFRL
Sbjct: 190 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRL 249
Query: 240 DNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 299
DNLLNMAYGVKRFSP+TIDGMTSL G+NIPGH GTGWCIFVYNL+PD+DES+LWQ+FGPF
Sbjct: 250 DNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 309
Query: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
GAV NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK HK+
Sbjct: 310 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS 369
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 655 bits (1689), Expect = 0.0
Identities = 324/360 (90%), Positives = 344/360 (95%), Gaps = 2/360 (0%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQEELKSLF 59
ME Q+SNGPT +NT+NGP++ N NC SP+ +G T+DSKTNLIVNYLPQNMTQEE +SLF
Sbjct: 8 MEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLF 66
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEA
Sbjct: 127 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 186
Query: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRL 239
EEAIKGLNGQKP GATEPITVKFANNPSQK++QA+LSQLYQSPNRRYPGPL QAQRFRL
Sbjct: 187 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRL 246
Query: 240 DNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 299
DNLLNMAYGVKRFSP+TIDGMTSL G+NIPGH GTGWCIFVYNL+PD+DES+LWQ+FGPF
Sbjct: 247 DNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 306
Query: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
GAV NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK HK+
Sbjct: 307 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS 366
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 655 bits (1689), Expect = 0.0
Identities = 324/360 (90%), Positives = 344/360 (95%), Gaps = 2/360 (0%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQEELKSLF 59
ME Q+SNGPT +NT+NGP++ N NC SP+ +G T+DSKTNLIVNYLPQNMTQEE +SLF
Sbjct: 25 MEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLF 83
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS
Sbjct: 84 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 143
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEA
Sbjct: 144 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 203
Query: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRL 239
EEAIKGLNGQKP GATEPITVKFANNPSQK++QA+LSQLYQSPNRRYPGPL QAQRFRL
Sbjct: 204 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRL 263
Query: 240 DNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 299
DNLLNMAYGVKRFSP+TIDGMTSL G+NIPGH GTGWCIFVYNL+PD+DES+LWQ+FGPF
Sbjct: 264 DNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 323
Query: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
GAV NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK HK+
Sbjct: 324 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS 383
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 655 bits (1689), Expect = 0.0
Identities = 324/360 (90%), Positives = 344/360 (95%), Gaps = 2/360 (0%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQEELKSLF 59
ME Q+SNGPT +NT+NGP++ N NC SP+ +G T+DSKTNLIVNYLPQNMTQEE +SLF
Sbjct: 8 MEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLF 66
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEA
Sbjct: 127 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 186
Query: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRL 239
EEAIKGLNGQKP GATEPITVKFANNPSQK++QA+LSQLYQSPNRRYPGPL QAQRFRL
Sbjct: 187 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRL 246
Query: 240 DNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPF 299
DNLLNMAYGVKRFSP+TIDGMTSL G+NIPGH GTGWCIFVYNL+PD+DES+LWQ+FGPF
Sbjct: 247 DNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF 306
Query: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
GAV NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK HK+
Sbjct: 307 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS 366
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 645 bits (1664), Expect = 0.0
Identities = 324/374 (86%), Positives = 344/374 (91%), Gaps = 16/374 (4%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQEELKSLF 59
ME Q+SNGPT +NT+NGP++ N NC SP+ +G T+DSKTNLIVNYLPQNMTQEE +SLF
Sbjct: 8 MEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLF 66
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEA
Sbjct: 127 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 186
Query: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRL 239
EEAIKGLNGQKP GATEPITVKFANNPSQK++QA+LSQLYQSPNRRYPGPL QAQRFRL
Sbjct: 187 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRL 246
Query: 240 DNLLNMAYGVK--------------RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAP 285
DNLLNMAYGVK RFSP+TIDGMTSL G+NIPGH GTGWCIFVYNL+P
Sbjct: 247 DNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSP 306
Query: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345
D+DES+LWQ+FGPFGAV NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR
Sbjct: 307 DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 366
Query: 346 VLQVSFKTNKTHKA 359
VLQVSFKTNK HK+
Sbjct: 367 VLQVSFKTNKAHKS 380
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 582 bits (1500), Expect = e-166
Identities = 294/360 (81%), Positives = 316/360 (87%), Gaps = 9/360 (2%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60
ME+Q+ GP NGP N G T+DSKTNLIVNYLPQNMTQ+E KSLFG
Sbjct: 9 MESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
SIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSYARPSSA
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD 240
EAIKGLNGQKP GA EPITVKFANNPSQKT QA+L+ LYQS RRY GPL Q QRFRLD
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
Query: 241 NLLNMAYGVKRFSPMTIDGMTSLAGINIP-GHPGTGWCIFVYNLAPDADESILWQMFGPF 299
NLLNMAYGVKRFSP+ IDGM+ LAG+ + G G GWCIFVYNL+P+ADES+LWQ+FGPF
Sbjct: 241 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF 300
Query: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
GAVTNVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFKT+K HKA
Sbjct: 301 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA 360
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 575 bits (1482), Expect = e-164
Identities = 294/367 (80%), Positives = 316/367 (86%), Gaps = 16/367 (4%)
Query: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60
ME+Q+ GP NGP N G T+DSKTNLIVNYLPQNMTQ+E KSLFG
Sbjct: 9 MESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
SIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSYARPSSA
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD 240
EAIKGLNGQKP GA EPITVKFANNPSQKT QA+L+ LYQS RRY GPL Q QRFRLD
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
Query: 241 NLLNMAYGVK-------RFSPMTIDGMTSLAGINIP-GHPGTGWCIFVYNLAPDADESIL 292
NLLNMAYGVK RFSP+ IDGM+ LAG+ + G G GWCIFVYNL+P+ADES+L
Sbjct: 241 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
Query: 293 WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 352
WQ+FGPFGAVTNVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFK
Sbjct: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
Query: 353 TNKTHKA 359
T+K HKA
Sbjct: 361 TSKQHKA 367
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 491 bits (1264), Expect = e-139
Identities = 237/321 (73%), Positives = 274/321 (85%), Gaps = 13/321 (4%)
Query: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
+TNLIVNYLPQNMTQ+EL+SLF SIGE+ES KL+RDK+ G SLGYGFVNY+ KDAE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
NTLNGLRLQ+KTIKVSYARPSS I+DANLY+SGLP+TMTQK++E +FS++GRII SR+L
Sbjct: 79 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217
VDQ TG+SRGV FIRFDKR EAEEAI NG KPPG++EPITVKFA NP+Q N A+LSQ
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQ 198
Query: 218 LYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWC 277
LY SP RR+ GP+ QAQRF RFSPM +D M+ L+G+N+PG+ +GWC
Sbjct: 199 LYHSPARRFGGPVHHQAQRF-------------RFSPMGVDHMSGLSGVNVPGNASSGWC 245
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
IF+YNL DADE ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY+EAAMAIASL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 338 NGYRLGDRVLQVSFKTNKTHK 358
NGYRLGD++LQVSFKTNK+HK
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
A I NL V+ LP+ MTQ EL LFS G + +++++ D+V G S G GF+ +
Sbjct: 10 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69
Query: 175 KRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAIL 215
+AE AI LNG + T I V +A S+ A L
Sbjct: 70 TAKDAERAINTLNGLRLQSKT--IKVSYARPSSEVIKDANL 108
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 126 bits (316), Expect = 3e-29
Identities = 80/215 (37%), Positives = 117/215 (54%), Gaps = 23/215 (10%)
Query: 19 TTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
T+ NNN SS +SG + SKTNL + LP + T ++L L G+I S K + DK T +
Sbjct: 42 TSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNK 101
Query: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 138
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP +M +
Sbjct: 102 CKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDE 154
Query: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA- 194
+ELE + +G++I++RIL D +G SRGVGF R + + E I NG + PPG
Sbjct: 155 QELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 213
Query: 195 --TEPITVKFANNPSQKTNQAILSQLYQSPNRRYP 227
TEP+ KFA+ +K Q+PN+ P
Sbjct: 214 APTEPLLCKFADGGQKKR---------QNPNKYIP 239
Score = 45.4 bits (106), Expect = 8e-05
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 261 TSLAGINIPGHPGTGWC------IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN 314
T+ + N +GW +++ L P + L ++ P+G + + K I D TN
Sbjct: 41 TTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTN 100
Query: 315 KCKGFGFVTMTNYDEAAMAIASL 337
KCKG+GFV + A A+++L
Sbjct: 101 KCKGYGFVDFDSPAAAQKAVSAL 123
Score = 38.5 bits (88), Expect = 0.009
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ NL DE L M PFG V + +++RD ++ +G GF M + ++ I
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201
Query: 338 NG 339
NG
Sbjct: 202 NG 203
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 126 bits (316), Expect = 3e-29
Identities = 80/215 (37%), Positives = 117/215 (54%), Gaps = 23/215 (10%)
Query: 19 TTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
T+ NNN SS +SG + SKTNL + LP + T ++L L G+I S K + DK T +
Sbjct: 42 TSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNK 101
Query: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 138
GYGFV++ P A+KA++ L +Q + K P+ NLY+S LP +M +
Sbjct: 102 CKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDE 154
Query: 139 KELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA- 194
+ELE + +G++I++RIL D +G SRGVGF R + + E I NG + PPG
Sbjct: 155 QELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 213
Query: 195 --TEPITVKFANNPSQKTNQAILSQLYQSPNRRYP 227
TEP+ KFA+ +K Q+PN+ P
Sbjct: 214 APTEPLLCKFADGGQKKR---------QNPNKYIP 239
Score = 45.4 bits (106), Expect = 8e-05
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 261 TSLAGINIPGHPGTGWC------IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN 314
T+ + N +GW +++ L P + L ++ P+G + + K I D TN
Sbjct: 41 TTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTN 100
Query: 315 KCKGFGFVTMTNYDEAAMAIASL 337
KCKG+GFV + A A+++L
Sbjct: 101 KCKGYGFVDFDSPAAAQKAVSAL 123
Score = 38.5 bits (88), Expect = 0.009
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ NL DE L M PFG V + +++RD ++ +G GF M + ++ I
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201
Query: 338 NG 339
NG
Sbjct: 202 NG 203
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 121 bits (303), Expect = 1e-27
Identities = 89/337 (26%), Positives = 158/337 (46%), Gaps = 60/337 (17%)
Query: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
D G + N+ + L ++ + L F + G I SCK+ D+ S G+GFV++
Sbjct: 90 DPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFET 147
Query: 90 PKDAEKAINTLNGLRLQTKTIKVSY--------ARPSSASIRDANLYVSGLPKTMTQKEL 141
+ A++AINT+NG+ L + + V + A + ++ N+YV LP + ++ L
Sbjct: 148 HEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGL 207
Query: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 201
+ LFSQ+G++++ +++ D +G SR GF+ F+K EA++A+ +NG++ G
Sbjct: 208 QDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSG-------- 258
Query: 202 FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMT 261
Y G ++ +R N L +RF M D +
Sbjct: 259 ---------------------RLLYAGRAQKRVER---QNELK-----RRFEQMKQDRLR 289
Query: 262 SLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 321
G+N ++V NL D+ L + F P+G +T+ KV+ + KGFGF
Sbjct: 290 RYQGVN----------LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGF 337
Query: 322 VTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
V ++ +EA A+ +NG +G + L V+ K +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 84.0 bits (206), Expect = 2e-16
Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T+ L F G I S ++ RD T +SLGY ++N+ P DAE+A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N L+ + I++ +++ P N+++ L ++ K L FS +G I++ ++
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ SRG GF+ F+ A++AI +NG
Sbjct: 132 CDEHG--SRGFGFVHFETHEAAQQAINTMNG 160
Score = 77.4 bits (189), Expect = 2e-14
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ V LP ++ ++ L+ LF G++ S K++RD +G S +GFVN+ ++A+KA+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVV 249
Query: 99 TLNGLRLQTKTIKVSYARPSSASIRD------------------ANLYVSGLPKTMTQKE 140
+NG + + + A+ + NLYV L ++ +
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
L + FS YG I +++++ + G S+G GF+ F EA +A+ +NG+ T+P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIV--GTKPLYV 365
Query: 201 KFANNPSQKTNQAILSQLYQ---SPNRRYPGPLAQQAQR 236
A ++ +AIL+ Y S R PL Q+
Sbjct: 366 ALAQRKEER--KAILTNQYMQRLSTMRTLSNPLLGSFQQ 402
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
IF+ NL D L+ F FG + + KV D + ++ GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTM 158
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L DR + V FK+ + +A
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREA 181
Score = 43.1 bits (100), Expect = 4e-04
Identities = 17/61 (27%), Positives = 36/61 (59%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V +L PD E++L++ F P G + +++V RD T + G+ ++ +A A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 338 N 338
N
Sbjct: 73 N 73
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 117 bits (293), Expect = 2e-26
Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 16/225 (7%)
Query: 1 METQLSNGPTCNNTAN-GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
++T+ S P + A P+T +++ +S +S + SKTNL + LP T ++L L
Sbjct: 22 LQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLC 81
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 82 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT- 140
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
NLY+S LP +M ++ELE + +G +I++RIL D G+SRGVGF R + +
Sbjct: 141 ------NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKC 193
Query: 180 EEAIKGLNG---QKPPG---ATEPITVKFANNPSQK-TNQAILSQ 217
E I+ NG + PPG +EP+ KFA+ +K NQ+ +Q
Sbjct: 194 EVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQ 238
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ L P + L ++ P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
Score = 38.9 bits (89), Expect = 0.007
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ NL DE L M PFG V + +++RD N +G GF M + ++ + I
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
Query: 338 NG 339
NG
Sbjct: 201 NG 202
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 117 bits (293), Expect = 2e-26
Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 16/225 (7%)
Query: 1 METQLSNGPTCNNTAN-GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
++T+ S P + A P+T +++ +S +S + SKTNL + LP T ++L L
Sbjct: 22 LQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLC 81
Query: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
G+I S K + DK T Q GYGFV++ P A+KA+ +L +Q + K P+
Sbjct: 82 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT- 140
Query: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
NLY+S LP +M ++ELE + +G +I++RIL D G+SRGVGF R + +
Sbjct: 141 ------NLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKC 193
Query: 180 EEAIKGLNG---QKPPG---ATEPITVKFANNPSQK-TNQAILSQ 217
E I+ NG + PPG +EP+ KFA+ +K NQ+ +Q
Sbjct: 194 EVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQ 238
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ L P + L ++ P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
Score = 38.9 bits (89), Expect = 0.007
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ NL DE L M PFG V + +++RD N +G GF M + ++ + I
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 200
Query: 338 NG 339
NG
Sbjct: 201 NG 202
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 116 bits (291), Expect = 3e-26
Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 15/207 (7%)
Query: 18 PTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG 77
P+T +++ +S +S + SKTNL + LP T ++L L G+I S K + DK T
Sbjct: 39 PSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN 98
Query: 78 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMT 137
Q GYGFV++ P A+KA+ +L +Q + K P+ NLY+S LP +M
Sbjct: 99 QCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMD 151
Query: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPG- 193
++ELE + +G +I++RIL D G+SRGVGF R + + E I+ NG + PPG
Sbjct: 152 EQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGI 210
Query: 194 --ATEPITVKFANNPSQK-TNQAILSQ 217
+EP+ KFA+ +K NQ+ +Q
Sbjct: 211 PAPSEPLLCKFADGGQKKRQNQSKYTQ 237
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ L P + L ++ P+G + + K I D NTN+CKG+GFV + A A+ASL
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
Score = 38.9 bits (89), Expect = 0.007
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ NL DE L M PFG V + +++RD N +G GF M + ++ + I
Sbjct: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDAN-GVSRGVGFARMESTEKCEVVIQHF 199
Query: 338 NG 339
NG
Sbjct: 200 NG 201
>gi|4506449 RNA binding motif, single stranded interacting protein 2
[Homo sapiens]
Length = 407
Score = 113 bits (282), Expect = 3e-25
Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
SS +GN + SKTNL + L T ++L L G+I S K + DK T + GYGFV
Sbjct: 43 SSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 102
Query: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
++ P A+KA+ L +Q + K P+ NLY+S LP +M ++ELE +
Sbjct: 103 DFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELEGML 155
Query: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPIT 199
+G++I++RIL D +G SRGVGF R + + E I NG + PPG ++P+
Sbjct: 156 KPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLL 214
Query: 200 VKFAN-NPSQKTNQ 212
KFA+ P ++ NQ
Sbjct: 215 CKFADGGPKKRQNQ 228
Score = 45.4 bits (106), Expect = 8e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ L P + L ++ P+G + + K I D TNKCKG+GFV + A A+ +L
Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
Score = 37.0 bits (84), Expect = 0.027
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ NL DE L M PFG V + +++RD + +G GF M + ++ I
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHF 195
Query: 338 NG 339
NG
Sbjct: 196 NG 197
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 111 bits (278), Expect = 9e-25
Identities = 84/329 (25%), Positives = 152/329 (46%), Gaps = 64/329 (19%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L +++ + L F + G I SCK+V D+ S GYGFV++ + AE+AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157
Query: 100 LNGLRLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMTQKELEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + M + L+ LF ++G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
++ +++ D+ +G S+G GF+ F++ +A++A+ +NG++ G
Sbjct: 216 PALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG---------------- 258
Query: 210 TNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIP 269
+ Y G ++ +R ++F M D +T G+N
Sbjct: 259 -------------KQIYVGRAQKKVER--------QTELKRKFEQMKQDRITRYQGVN-- 295
Query: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
++V NL D+ L + F PFG +T+ KV+ + + KGFGFV ++ +E
Sbjct: 296 --------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEE 345
Query: 330 AAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
A A+ +NG + + L V+ K +
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 90.9 bits (224), Expect = 2e-18
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T+ L F G I S ++ RD IT +SLGY +VN+ P DAE+A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N ++ K +++ +++ PS N+++ L K++ K L FS +G I++ +++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G GF+ F+ + AE AI+ +NG
Sbjct: 132 CDE--NGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 86.3 bits (212), Expect = 4e-17
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ + ++M E LK LFG G S K++ D+ +G+S G+GFV++ +DA+KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249
Query: 99 TLNGLRLQTKTIKVSYARPS------------------SASIRDANLYVSGLPKTMTQKE 140
+NG L K I V A+ + NLYV L + +
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
L + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ AT+P+ V
Sbjct: 310 LRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYV 365
Query: 201 KFANNPSQKTNQAILSQLY---QSPNRRYPGPLAQQAQ 235
A ++ QA L+ Y + R P P+ Q
Sbjct: 366 ALAQRKEER--QAHLTNQYMQRMASVRAVPNPVINPYQ 401
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
IF+ NL D L+ F FG + + KV+ D N KG+GFV + A AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L DR + V FK+ K +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
PS+ S A+LYV L +T+ L + FS G I++ R+ D +T S G ++ F +
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 177 IEAEEAIKGLN 187
+AE A+ +N
Sbjct: 63 ADAERALDTMN 73
Score = 43.5 bits (101), Expect = 3e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V +L PD E++L++ F P G + +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 338 N 338
N
Sbjct: 73 N 73
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 110 bits (274), Expect = 3e-24
Identities = 83/329 (25%), Positives = 155/329 (47%), Gaps = 64/329 (19%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L +++ + L F + G I SCK+V D+ S GY FV++ + A+KAI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 100 LNGLRLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMTQKELEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + + + L++LFSQ+G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
+ ++ +++ D G S+G GF+ ++K +A +A++ +NG++ G + F +K
Sbjct: 216 KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-----KIIFVGRAQKK 269
Query: 210 TNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIP 269
+ +QA+ R +F + + ++ G+N
Sbjct: 270 --------------------VERQAELKR------------KFEQLKQERISRYQGVN-- 295
Query: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
+++ NL D+ L + F PFG++T+ KV+ + KGFGFV ++ +E
Sbjct: 296 --------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEE 345
Query: 330 AAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
A A+ +NG +G + L V+ K +
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/151 (31%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T+ L F G + S ++ RD IT +SLGY +VN+ P DAE+A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K L FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G F+ F+ + A++AI+ +NG
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 82.8 bits (203), Expect = 4e-16
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 27/196 (13%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ + + + E LK LF G+ S K++RD G+S G+GFV+Y +DA KA+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 249
Query: 99 TLNGLRLQTKTIKVSYARPS------------------SASIRDANLYVSGLPKTMTQKE 140
+NG + K I V A+ + + NLY+ L T+ ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
L + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 310 LRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYV 365
Query: 201 KFANNPSQK----TNQ 212
A ++ TNQ
Sbjct: 366 ALAQRKEERKAHLTNQ 381
Score = 47.4 bits (111), Expect = 2e-05
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L DR + V FK+ K +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V +L D E++L++ F P G V +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 338 N 338
N
Sbjct: 73 N 73
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 110 bits (274), Expect = 3e-24
Identities = 83/329 (25%), Positives = 155/329 (47%), Gaps = 64/329 (19%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L +++ + L F + G I SCK+V D+ S GY FV++ + A+KAI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 100 LNGLRLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMTQKELEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + + + L++LFSQ+G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
+ ++ +++ D G S+G GF+ ++K +A +A++ +NG++ G + F +K
Sbjct: 216 KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-----KIIFVGRAQKK 269
Query: 210 TNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIP 269
+ +QA+ R +F + + ++ G+N
Sbjct: 270 --------------------VERQAELKR------------KFEQLKQERISRYQGVN-- 295
Query: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
+++ NL D+ L + F PFG++T+ KV+ + KGFGFV ++ +E
Sbjct: 296 --------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEE 345
Query: 330 AAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
A A+ +NG +G + L V+ K +
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/151 (31%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T+ L F G + S ++ RD IT +SLGY +VN+ P DAE+A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K L FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G F+ F+ + A++AI+ +NG
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 82.8 bits (203), Expect = 4e-16
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 27/196 (13%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ + + + E LK LF G+ S K++RD G+S G+GFV+Y +DA KA+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 249
Query: 99 TLNGLRLQTKTIKVSYARPS------------------SASIRDANLYVSGLPKTMTQKE 140
+NG + K I V A+ + + NLY+ L T+ ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
L + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 310 LRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYV 365
Query: 201 KFANNPSQK----TNQ 212
A ++ TNQ
Sbjct: 366 ALAQRKEERKAHLTNQ 381
Score = 47.4 bits (111), Expect = 2e-05
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L DR + V FK+ K +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V +L D E++L++ F P G V +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 338 N 338
N
Sbjct: 73 N 73
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 110 bits (274), Expect = 3e-24
Identities = 83/329 (25%), Positives = 155/329 (47%), Gaps = 64/329 (19%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L +++ + L F + G I SCK+V D+ S GY FV++ + A+KAI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 100 LNGLRLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMTQKELEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + + + L++LFSQ+G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
+ ++ +++ D G S+G GF+ ++K +A +A++ +NG++ G + F +K
Sbjct: 216 KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-----KIIFVGRAQKK 269
Query: 210 TNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIP 269
+ +QA+ R +F + + ++ G+N
Sbjct: 270 --------------------VERQAELKR------------KFEQLKQERISRYQGVN-- 295
Query: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
+++ NL D+ L + F PFG++T+ KV+ + KGFGFV ++ +E
Sbjct: 296 --------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEE 345
Query: 330 AAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
A A+ +NG +G + L V+ K +
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/151 (31%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T+ L F G + S ++ RD IT +SLGY +VN+ P DAE+A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K L FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G F+ F+ + A++AI+ +NG
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 82.8 bits (203), Expect = 4e-16
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 27/196 (13%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ + + + E LK LF G+ S K++RD G+S G+GFV+Y +DA KA+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 249
Query: 99 TLNGLRLQTKTIKVSYARPS------------------SASIRDANLYVSGLPKTMTQKE 140
+NG + K I V A+ + + NLY+ L T+ ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
L + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 310 LRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYV 365
Query: 201 KFANNPSQK----TNQ 212
A ++ TNQ
Sbjct: 366 ALAQRKEERKAHLTNQ 381
Score = 47.4 bits (111), Expect = 2e-05
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L DR + V FK+ K +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V +L D E++L++ F P G V +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 338 N 338
N
Sbjct: 73 N 73
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 105 bits (261), Expect = 8e-23
Identities = 76/315 (24%), Positives = 147/315 (46%), Gaps = 61/315 (19%)
Query: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
L V L +++T+ + LF IG +SCK++ + + Y FV + + +DA A+ +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 101 NGLRLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
NG ++ K +KV++A S+ +D + ++V L +T ++++ F+ +G+I +R+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILS 216
+ D TG S+G GF+ F +++AE AI + GQ + +TN A
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ------------WLGGRQIRTNWA--- 173
Query: 217 QLYQSPNRRYPGPLAQQ---AQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPG 273
R+ P P + Q ++ R ++++N + SP
Sbjct: 174 ------TRKPPAPKSTQENNTKQLRFEDVVNQS------SPKNC---------------- 205
Query: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
++ +A + ++ Q F PFG + ++V + KG+ FV + ++ AA A
Sbjct: 206 ---TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHA 256
Query: 334 IASLNGYRLGDRVLQ 348
I S+NG + V++
Sbjct: 257 IVSVNGTTIEGHVVK 271
Score = 77.4 bits (189), Expect = 2e-14
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
N ++P + ++ V L +T E++KS F G+I ++V+D TG+S GY
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RP--------------------SSA 120
GFV++ + DAE AI + G L + I+ ++A +P + +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQS 200
Query: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
S ++ +Y G+ +T + + Q FS +G+I+ R+ + +G F+RF A
Sbjct: 201 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAA 254
Query: 181 EAIKGLNG 188
AI +NG
Sbjct: 255 HAIVSVNG 262
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+FV +L+P+ + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 338 NGYRLGDRVLQVSFKTNK 355
G LG R ++ ++ T K
Sbjct: 159 GGQWLGGRQIRTNWATRK 176
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329
G P T ++V NL+ D E ++ Q+F G + K+I + +N + FV + +
Sbjct: 6 GQPRT---LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRD 60
Query: 330 AAMAIASLNGYRLGDRVLQVSFKT 353
AA A+A++NG ++ + ++V++ T
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT 84
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
+ +T + ++ F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 106 QTKTIKVSYARPS 118
+ +K + + S
Sbjct: 266 EGHVVKCYWGKES 278
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 102 bits (253), Expect = 7e-22
Identities = 80/327 (24%), Positives = 147/327 (44%), Gaps = 60/327 (18%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ V L +++ + L + G I SC +V D+ S GYGFV++ + AE+AI
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157
Query: 100 LNGLRL--------QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
+NG+ L Q K+ K A + + N+Y+ + M + L+ LF ++G
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
++ +++ D+ +G S+G GF+ F++ +A++A+ +NG++ G
Sbjct: 218 LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG------------------ 258
Query: 212 QAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGH 271
+ Y G ++ +R + F M D +T +N
Sbjct: 259 -----------KQIYVGRAQKKVER--------QTELKRTFEQMKQDRITRYQVVN---- 295
Query: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331
++V NL D+ L + F PFG +T+ KV+ + + KGFGFV ++ +EA
Sbjct: 296 ------LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEAT 347
Query: 332 MAIASLNGYRLGDRVLQVSFKTNKTHK 358
A+ +NG + + L V+ K +
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 85.9 bits (211), Expect = 5e-17
Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 33/214 (15%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + ++M E LK LFG G S K++ D+ +G+S G+GFV++ +DA+KA++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250
Query: 100 LNGLRLQTKTIKVSYARPS------------------SASIRDANLYVSGLPKTMTQKEL 141
+NG L K I V A+ + NLYV L + + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310
Query: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 201
+ FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ AT+P+ V
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVA 366
Query: 202 FANNPSQKTNQAILSQLYQS--------PNRRYP 227
A ++ QA L+ Y PN+R P
Sbjct: 367 LAQRKEER--QAYLTNEYMQRMASVRAVPNQRAP 398
Score = 82.0 bits (201), Expect = 7e-16
Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T+ L F G I S ++ RD IT S Y +VN+ KDAE A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N ++ K +++ +++ PS N++V L K++ K L S +G I++ ++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV 131
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G GF+ F+ AE AIK +NG
Sbjct: 132 CDE--NGSKGYGFVHFETHEAAERAIKKMNG 160
Score = 68.9 bits (167), Expect = 7e-12
Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 34/273 (12%)
Query: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
PS+ S A+LYV L +T+ L + FS G I++ RI D +T S ++ F
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 177 IEAEEAIKGLNGQKPPGATEPITVKFA-NNPSQK---TNQAILSQLYQSPNRRYPGPLAQ 232
+AE A+ +N G +P+ + ++ +PS + + L +S N +
Sbjct: 63 KDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 120
Query: 233 QAQRFRLDNLL-----NMAYG-------------VKRFSPMTIDGMTSLAG--------- 265
N++ + YG +K+ + M ++G G
Sbjct: 121 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180
Query: 266 INIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMT 325
+ +++ N D D+ L +FG FG +VKV+ D + K KGFGFV+
Sbjct: 181 AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFE 239
Query: 326 NYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
+++A A+ +NG L + + V K +
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 43.1 bits (100), Expect = 4e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
IFV NL + L+ FG + + V+ D N +K G+GFV ++ A AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKM 158
Query: 338 NGYRL-GDRVLQVSFKTNKTHKA 359
NG L G +V FK+ K +A
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREA 181
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 101 bits (252), Expect = 9e-22
Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 61/321 (19%)
Query: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
++ L V L +++T+ + LF IG ++CK++ D T + Y FV + + + A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGR 150
A+ +NG ++ K +KV++A S+ +D +++V L +T ++++ F+ +GR
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
I +R++ D TG S+G GF+ F + +AE AI+ + GQ + +T
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ------------WLGGRQIRT 168
Query: 211 NQAILSQLYQSPNRRYPGPLA---QQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGIN 267
N A R+ P P + ++ D ++N + SP
Sbjct: 169 NWA---------TRKPPAPKSTYESNTKQLSYDEVVNQS------SP------------- 200
Query: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 327
+ ++ + E ++ Q F PFG + ++V D KG+ FV ++
Sbjct: 201 ------SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 328 DEAAMAIASLNGYRLGDRVLQ 348
+ AA AI S+NG + V++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVK 269
Score = 81.6 bits (200), Expect = 1e-15
Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 40/256 (15%)
Query: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
N ++P + ++ V L +T E++K+ F G I ++V+D TG+S GY
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR---PSSASIRDAN------------- 126
GFV++ + DAE AI + G L + I+ ++A P+ S ++N
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQS 198
Query: 127 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
+Y G+ +T++ + Q FS +G+I+ R+ D +G F+RF+ A
Sbjct: 199 SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAA 252
Query: 181 EAIKGLNGQKPPG-------ATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQ 233
AI +NG G E + + NP Q+ NQ Q Y + Y AQQ
Sbjct: 253 HAIVSVNGTTIEGHVVKCYWGKETLDM---INPVQQQNQIGYPQPYGQWGQWYGN--AQQ 307
Query: 234 AQRFRLDNLLNMAYGV 249
++ + AYG+
Sbjct: 308 IGQYMPNGWQVPAYGM 323
Score = 57.8 bits (138), Expect = 1e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+FV +L+P+ + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 338 NGYRLGDRVLQVSFKTNK 355
G LG R ++ ++ T K
Sbjct: 157 GGQWLGGRQIRTNWATRK 174
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V NL+ D E+++ Q+F G N K+I D N + FV + AA A+A++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAM 66
Query: 338 NGYRLGDRVLQVSFKT 353
NG ++ + ++V++ T
Sbjct: 67 NGRKIMGKEVKVNWAT 82
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 100 bits (249), Expect = 2e-21
Identities = 78/330 (23%), Positives = 150/330 (45%), Gaps = 74/330 (22%)
Query: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD----KITGQSLG-----------YGFV 85
L V L +++T+ + LF IG +SCK++ + + S+G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKEL 141
+ + +DA A+ +NG ++ K +KV++A S+ +D + ++V L +T +++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130
Query: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 201
+ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ
Sbjct: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ------------ 178
Query: 202 FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQ---AQRFRLDNLLNMAYGVKRFSPMTID 258
+ +TN A R+ P P + Q ++ R ++++N + SP
Sbjct: 179 WLGGRQIRTNWA---------TRKPPAPKSTQENNTKQLRFEDVVNQS------SPKNC- 222
Query: 259 GMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG 318
++ +A + ++ Q F PFG + ++V + KG
Sbjct: 223 ------------------TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KG 258
Query: 319 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
+ FV + ++ AA AI S+NG + V++
Sbjct: 259 YSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 77.4 bits (189), Expect = 2e-14
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
N ++P + ++ V L +T E++KS F G+I ++V+D TG+S GY
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RP--------------------SSA 120
GFV++ + DAE AI + G L + I+ ++A +P + +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQS 217
Query: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
S ++ +Y G+ +T + + Q FS +G+I+ R+ + +G F+RF A
Sbjct: 218 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAA 271
Query: 181 EAIKGLNG 188
AI +NG
Sbjct: 272 HAIVSVNG 279
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+FV +L+P+ + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 338 NGYRLGDRVLQVSFKTNK 355
G LG R ++ ++ T K
Sbjct: 176 GGQWLGGRQIRTNWATRK 193
Score = 34.7 bits (78), Expect = 0.14
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD----FNTNKCKGFG----- 320
G P T ++V NL+ D E ++ Q+F G + K+I + N GF
Sbjct: 6 GQPRT---LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 321 ------FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 353
FV + +AA A+A++NG ++ + ++V++ T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
+ +T + ++ F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 106 QTKTIKVSYARPS 118
+ +K + + S
Sbjct: 283 EGHVVKCYWGKES 295
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 97.4 bits (241), Expect = 2e-20
Identities = 77/332 (23%), Positives = 146/332 (43%), Gaps = 72/332 (21%)
Query: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
++ L V L +++T+ + LF IG ++CK++ D T + Y FV + + + A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDA---------------NLYVSGLPKTMTQK 139
A+ +NG ++ K +KV++A S+ +D +++V L +T +
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPIT 199
+++ F+ +GRI +R++ D TG S+G GF+ F + +AE AI+ + GQ
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---------- 170
Query: 200 VKFANNPSQKTNQAILSQLYQSPNRRYPGPLA---QQAQRFRLDNLLNMAYGVKRFSPMT 256
+ +TN A R+ P P + ++ D ++N + SP
Sbjct: 171 --WLGGRQIRTNWA---------TRKPPAPKSTYESNTKQLSYDEVVNQS------SP-- 211
Query: 257 IDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 316
+ ++ + E ++ Q F PFG + ++V D
Sbjct: 212 -----------------SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------ 248
Query: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
KG+ FV +++ AA AI S+NG + V++
Sbjct: 249 KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 82.8 bits (203), Expect = 4e-16
Identities = 69/253 (27%), Positives = 112/253 (44%), Gaps = 40/253 (15%)
Query: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
SS V S ++ V L +T E++K+ F G I ++V+D TG+S GYGFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR---PSSASIRDAN---------------- 126
++ + DAE AI + G L + I+ ++A P+ S ++N
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPS 212
Query: 127 ---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
+Y G+ +T++ + Q FS +G+I+ R+ D +G F+RF+ A AI
Sbjct: 213 NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAI 266
Query: 184 KGLNGQKPPG-------ATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQR 236
+NG G E + + NP Q+ NQ Q Y + Y AQQ +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDM---INPVQQQNQIGYPQPYGQWGQWYGN--AQQIGQ 321
Query: 237 FRLDNLLNMAYGV 249
+ + AYG+
Sbjct: 322 YMPNGWQVPAYGM 334
Score = 66.6 bits (161), Expect = 3e-11
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 52/229 (22%)
Query: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
LYV L + +T+ + QLFSQ G ++++D T + F+ F + A A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 246
NG+K G + + V +A PS + S + + Q++Q
Sbjct: 67 NGRKIMG--KEVKVNWATTPSSQKKDTSSSTVVST----------QRSQDH--------- 105
Query: 247 YGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306
+ +FV +L+P+ + F PFG +++ +
Sbjct: 106 -----------------------------FHVFVGDLSPEITTEDIKAAFAPFGRISDAR 136
Query: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
V++D T K KG+GFV+ N +A AI + G LG R ++ ++ T K
Sbjct: 137 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 92.8 bits (229), Expect = 4e-19
Identities = 80/322 (24%), Positives = 147/322 (45%), Gaps = 66/322 (20%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L +++ + L F + G+I S K++ D S GY FV++ + A++AI
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEE 156
Query: 100 LNGLRLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMTQKELEQLFSQYG 149
+NG L K KV R + R+A N+Y+ M + L+ +FS+YG
Sbjct: 157 MNGKLL--KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214
Query: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
+ ++ +++ D +G S+G GF+ FD A++A++ +NG+ G + F +K
Sbjct: 215 KTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDING-----QLIFVGRAQKK 268
Query: 210 T-NQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINI 268
QA L Q++ +Q +R R+ GVK
Sbjct: 269 VERQAELKQMF------------EQLKRERIRG----CQGVK------------------ 294
Query: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328
+++ NL D+ L F FG+++ VKV+++ + KGFG + ++ +
Sbjct: 295 ---------LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE--EGQSKGFGLICFSSPE 343
Query: 329 EAAMAIASLNGYRLGDRVLQVS 350
+A A+ +NG LG + L ++
Sbjct: 344 DATKAMTEMNGRILGSKPLSIA 365
Score = 89.0 bits (219), Expect = 6e-18
Identities = 46/152 (30%), Positives = 95/152 (62%), Gaps = 4/152 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L ++T++ L F ++G + S ++ RD++T +SLGY +VN++ DA+KA++T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 100 LNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
+N ++ K+I++ +++ + R N+++ L K++ K L + FS +G+I++S+++
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
D S+G F+ F + A+ AI+ +NG+
Sbjct: 131 SDDQG--SKGYAFVHFQNQSAADRAIEEMNGK 160
Score = 68.6 bits (166), Expect = 8e-12
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ + +M E LK +F G+ S K++ D +G+S G+GFV++ + A+KA+
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 99 TLNGLRLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMTQKE 140
+NG + + I V A R + LY+ L T+ ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
L FS +G I SR+ V Q G S+G G I F +A +A+ +NG+
Sbjct: 309 LRNEFSSFGSI--SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGR 355
Score = 48.5 bits (114), Expect = 9e-06
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
L + L + E+L++ F S G I K+++++ GQS G+G + + P+DA KA+ +
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 352
Query: 101 NGLRLQTKTIKVSYAR 116
NG L +K + ++ A+
Sbjct: 353 NGRILGSKPLSIALAQ 368
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+++ N D D+ L +F +G +VKV+ D ++ K KGFGFV+ +++ A A+ +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 338 NGYRLGDRVLQVSFKTNKTHK 358
NG + +++ V K +
Sbjct: 251 NGRDINGQLIFVGRAQKKVER 271
Score = 43.1 bits (100), Expect = 4e-04
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+F+ NL D L++ F FG + + KV+ D KG+ FV N A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 338 NGYRL-GDRVLQVSFKTNKTHKA 359
NG L G +V FK K +A
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREA 180
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
+A R A+LYV L +T+ L + FS G +++ RI DQVT S G ++ F + +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 179 AEEAIKGLN 187
A++A+ +N
Sbjct: 64 AQKALDTMN 72
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 92.0 bits (227), Expect = 7e-19
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L +T+ L F G I S ++ RDKIT +SLGY +VNY P DA++A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
LN ++ + +++ +++ PS N+++ L KT+ K L +FS +G I++ ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ +G GF+ F K+ AE AI +NG
Sbjct: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L + + + L ++F + G I SCK+ D+ + GYGFV++ + AE+AI+
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 100 LNGLRLQTKTIKV 112
+NG+ L + I V
Sbjct: 149 MNGMFLNYRKIFV 161
Score = 42.7 bits (99), Expect = 5e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+F+ NL D L+ +F FG + + KV D KG+GFV + A AI +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L R + V FK++K +A
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREA 172
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 92.0 bits (227), Expect = 7e-19
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
+L V L +T+ L F G I S ++ RDKIT +SLGY +VNY P DA++A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
LN ++ + +++ +++ PS N+++ L KT+ K L +FS +G I++ ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
D+ +G GF+ F K+ AE AI +NG
Sbjct: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L + + + L ++F + G I SCK+ D+ + GYGFV++ + AE+AI+
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 100 LNGLRLQTKTIKV 112
+NG+ L + I V
Sbjct: 149 MNGMFLNYRKIFV 161
Score = 42.7 bits (99), Expect = 5e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+F+ NL D L+ +F FG + + KV D KG+GFV + A AI +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
Query: 338 NGYRLGDRVLQVS-FKTNKTHKA 359
NG L R + V FK++K +A
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREA 172
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 90.1 bits (222), Expect = 3e-18
Identities = 80/320 (25%), Positives = 150/320 (46%), Gaps = 61/320 (19%)
Query: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
N+ + L +++ L LF + G I SCK+V D S GY +V++ A +AI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
Query: 100 LNGLRLQTKTIKVS---YARPSSASIRD------ANLYVSGLPKTMTQKELEQLFSQYGR 150
+NG+RL + + V + +A +R N++V + + ++L++LF +YG
Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
Query: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
+ +++ D +G S+G GF+R++ A++A+ L+G+ G V + +K
Sbjct: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDG-----KVLYVGRAQKKI 278
Query: 211 NQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPG 270
+ L++L RR+ +R RL ++ P PG
Sbjct: 279 ER--LAEL----RRRF--------ERLRLK---------EKSRP--------------PG 301
Query: 271 HPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330
P I++ NL ++ L + F FG+++ KV+ + + KGFG V ++++EA
Sbjct: 302 VP-----IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354
Query: 331 AMAIASLNGYRLGDRVLQVS 350
A+ +NG +G + L V+
Sbjct: 355 TKAVDEMNGRIVGSKPLHVT 374
Score = 82.0 bits (201), Expect = 7e-16
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
K L V L ++T++ L F G + ++ RD +T LGYG+VN+ P DAE A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 98 NTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
NT+N + K ++ +++P + N+++ L K++ + L LFS +G I++ +
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
++ D S+G ++ FD A AI +NG
Sbjct: 137 VVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
Score = 73.9 bits (180), Expect = 2e-13
Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
TN+ V + ++ E+LK LF G ES K++RD +G+S G+GFV Y + A+KA+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
Query: 99 TLNGLRLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMTQKE 140
L+G + K + V A+ + + +Y+ L +T+ ++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
L++ FS +G I ++++++ G +G G + F EA +A+ +NG+
Sbjct: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
Score = 52.8 bits (125), Expect = 5e-07
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
+FV N+ D D+ L ++F +G +VKVIRD + K KGFGFV ++ A A+ L
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 338 NGYRLGDRVLQVSFKTNKTHK 358
+G + +VL V K +
Sbjct: 260 HGKSIDGKVLYVGRAQKKIER 280
Score = 36.2 bits (82), Expect = 0.047
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V +L PD E +L++ F P G + ++ RD T G+G+V +A A+ ++
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 338 N 338
N
Sbjct: 80 N 80
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 88.6 bits (218), Expect = 8e-18
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
Query: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
+ P+ N + + V L + +++ L LF G + + + +D++TGQ GYGFV
Sbjct: 3 AGPISERNQD---ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 59
Query: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQL 144
++ +DA+ AI +N ++L K I+V+ A + ++ AN+++ L + +K L
Sbjct: 60 EFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDT 119
Query: 145 FSQYGRII-TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
FS +G I+ T +I+ D TG S+G FI F ++ AI+ +NGQ PITV +A
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYA 177
Query: 204 NNPSQK 209
K
Sbjct: 178 FKKDSK 183
Score = 59.7 bits (143), Expect = 4e-09
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNV-KVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
IF+ NL P+ DE +L+ F FG + K++RD +T KG+ F+ ++D + AI +
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 337 LNGYRLGDRVLQVSFKTNKTHK 358
+NG L +R + VS+ K K
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSK 183
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
++V L E +LW++F G V N + +D T + +G+GFV + ++A AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 338 NGYRLGDRVLQVS 350
N +L + ++V+
Sbjct: 75 NMIKLYGKPIRVN 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,509,260
Number of Sequences: 37866
Number of extensions: 586005
Number of successful extensions: 3017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 1026
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.