Guide to the Human Genome
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Name: C5orf36 Sequence: fasta or formatted (1275aa) NCBI GI: 224589077
Description:

hypothetical protein LOC285600 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {324aa} hypothetical protein LOC285600 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         53           2
 C cysteine            2.9         37           2
 D aspartate           4.4         56           2
 E glutamate           8.0        102           4
 F phenylalanine       4.7         60           3
 G glycine             2.2         28           2
 H histidine           2.8         36           2
 I isoleucine          5.7         73           2
 K lysine              7.5         95           2
 L leucine            12.7        162           3
 M methionine          2.6         33           1
 N asparagine          4.9         63           2
 P proline             3.7         47           3
 Q glutamine           5.6         72           2
 R arginine            3.7         47           2
 S serine              9.0        115           3
 T threonine           5.6         71           3
 V valine              5.3         68           2
 W tryptophan          1.8         23           1
 Y tyrosine            2.7         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285600 isoform 1 
C5orf36               0.248   hypothetical protein LOC285600 isoform 2 
TRIP11                0.004   thyroid hormone receptor interactor 11 
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
KIF11                 0.004   kinesin family member 11 
DST                   0.004   dystonin isoform 1eB precursor 
CRB1                  0.004   crumbs homolog 1 precursor 
CES8                  0.003   carboxylesterase 8 (putative) 
EVI5                  0.003   ecotropic viral integration site 5 
KRT31                 0.003   keratin 31 
KRT33B                0.003   type I hair keratin 3B 
NBEA                  0.003   neurobeachin 
ATM                   0.003   ataxia telangiectasia mutated isoform 2 
ATM                   0.003   ataxia telangiectasia mutated isoform 1 
LOC651610             0.003   PREDICTED: similar to Serine-protein kinase ATM, pa...
RALBP1                0.003   ralA binding protein 1 
MDN1                  0.003   MDN1, midasin homolog 
LOC727909             0.002   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.002   PREDICTED: similar to Golgin subfamily A member 8-l...
CLEC12B               0.002   C-type lectin domain family 12, member B isoform 1 ...
CLEC12B               0.002   C-type lectin domain family 12, member B isoform 2 ...
KIAA1688              0.002   KIAA1688 protein 
LOC728080             0.002   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.002   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.002   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.002   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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