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Search of human proteins with 224548950
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224548950 hypothetical protein LOC644844 [Homo sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224548950 hypothetical protein LOC644844 [Homo sapiens] 225 7e-60
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 67 4e-12
gi|7706501 WW domain binding protein 11 [Homo sapiens] 62 1e-10
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 60 4e-10
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 60 5e-10
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 59 6e-10
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 59 8e-10
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 59 8e-10
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 59 8e-10
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 58 1e-09
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 58 1e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 58 2e-09
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 58 2e-09
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 58 2e-09
gi|17402900 far upstream element-binding protein [Homo sapiens] 57 2e-09
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 57 2e-09
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 57 3e-09
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 57 3e-09
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 57 3e-09
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 57 4e-09
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 56 5e-09
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 56 5e-09
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 56 5e-09
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 56 5e-09
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 56 5e-09
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 56 7e-09
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 56 7e-09
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 56 7e-09
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 56 7e-09
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 56 7e-09
>gi|224548950 hypothetical protein LOC644844 [Homo sapiens]
Length = 82
Score = 225 bits (573), Expect = 7e-60
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MDPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHH 60
MDPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHH
Sbjct: 1 MDPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHH 60
Query: 61 GPGPCGPPPGHGPGHPPPGPHH 82
GPGPCGPPPGHGPGHPPPGPHH
Sbjct: 61 GPGPCGPPPGHGPGHPPPGPHH 82
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 66.6 bits (161), Expect = 4e-12
Identities = 36/68 (52%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPC-GPPPGHGPGPCGPPPHHGPGPC--GPPPGHGP 73
PPG P PG+GP P PPP GP P GP P PGP GPP P P GPPPG
Sbjct: 293 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGA-- 350
Query: 74 GHPPPGPH 81
PPP PH
Sbjct: 351 --PPPAPH 356
Score = 52.0 bits (123), Expect = 1e-07
Identities = 37/88 (42%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GHGHPPG----HCGPPPGHG------PGPCG------PPPH-HGPGPCGPPPGHGPGPC- 54
G+G PPG GPPP G PGP G PPPH GP P PPP P
Sbjct: 302 GYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAF 361
Query: 55 GPPPHHGPGPC----GPPPGHGPGHPPP 78
PPP + P GPPP G PPP
Sbjct: 362 FPPPTNSGMPTSDSRGPPPTDPYGRPPP 389
Score = 51.6 bits (122), Expect = 1e-07
Identities = 40/110 (36%), Positives = 41/110 (37%), Gaps = 37/110 (33%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHGPGPCGP--------PPGHG--- 50
PGP G G PP G P P GP GPP GP P G PP G
Sbjct: 218 PGPAGP----GGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRP 273
Query: 51 --------------------PGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
PGP P P +GP P PPP GP PPPGP
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGP-PPPPGP 322
Score = 40.0 bits (92), Expect = 4e-04
Identities = 31/76 (40%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 17 PPGHCGPP-----PGH--GPGPCGPPPHHGPGPC-GPPPGHGPGPC----GPPPHHGPGP 64
PPG GPP P H GP P PPP P PPP + P GPPP P
Sbjct: 327 PPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP---TDP 383
Query: 65 CGPPPGHGPG-HPPPG 79
G PP + G + PPG
Sbjct: 384 YGRPPPYDRGDYGPPG 399
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/70 (42%), Positives = 30/70 (42%), Gaps = 18/70 (25%)
Query: 12 GGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGP-GPCGPPPG 70
GG G G PG PG P GPG GPPP P P G P P GP GPP
Sbjct: 200 GGRGR-----GRFPGAVPGGDRFPGPAGPG--GPPP---PFPAGQTPPRPPLGPPGPP-- 247
Query: 71 HGPGHPPPGP 80
PPGP
Sbjct: 248 -----GPPGP 252
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 62.0 bits (149), Expect = 1e-10
Identities = 37/90 (41%), Positives = 37/90 (41%), Gaps = 26/90 (28%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPG------------------------ 52
PP PP GP P GPPP P GPP G PG
Sbjct: 398 PPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRL 457
Query: 53 -PCGPPPHHGPG-PCGPPPGHGPGHPPPGP 80
P GPPP PG P GPPPG PG PP GP
Sbjct: 458 LPPGPPPGRPPGPPPGPPPGLPPGPPPRGP 487
Score = 56.2 bits (134), Expect = 5e-09
Identities = 40/81 (49%), Positives = 40/81 (49%), Gaps = 20/81 (24%)
Query: 15 GHPPGHCGPPPG-------------HGPGPCGPPPHHGPG-PCGPPPGHGPG-PCGPPPH 59
G PPG PPPG GP P PP PG P GPPPG PG P GPPP
Sbjct: 429 GLPPG---PPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPP- 484
Query: 60 HGPGPCGPPPGHGPGHPPPGP 80
GP P PPP PG PPP P
Sbjct: 485 RGPPPRLPPPA-PPGIPPPRP 504
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/71 (50%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 22 GPPPGHGPGPC-GPPPH--HGPGPCGPPPG-HGPGPCG-PPPHHG------PGPCGP-PP 69
GPPPG PGP GPPP GP P GPPP P P G PPP G P GP PP
Sbjct: 461 GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPP 520
Query: 70 GHGPGHPPPGP 80
G P P P P
Sbjct: 521 GLFPPAPLPNP 531
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/83 (37%), Positives = 31/83 (37%), Gaps = 26/83 (31%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPG------------------- 63
PP P PP GP P GPPP P GPP PG
Sbjct: 393 PPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRG 452
Query: 64 ------PCGPPPGHGPGHPPPGP 80
P GPPPG PG PPPGP
Sbjct: 453 PLPRLLPPGPPPGRPPG-PPPGP 474
Score = 48.5 bits (114), Expect = 1e-06
Identities = 35/70 (50%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 18 PGHCGP-----PPGHGPG-PCGPPPHHGPG-PCGPPPGHGPGPCGPPPHHGPGPCGPPPG 70
PG GP PPG PG P GPPP PG P GPPP GP P PPP P PPP
Sbjct: 448 PGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPP-RGPPPRLPPP---APPGIPPPR 503
Query: 71 HGPGHPPPGP 80
G PP P
Sbjct: 504 PGMMRPPLVP 513
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 55 GPP-------PHHGPGPCGPPPGHGPGHPPPGP 80
GPP P G G PPG P PPPGP
Sbjct: 174 GPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGP 206
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 60.1 bits (144), Expect = 4e-10
Identities = 38/79 (48%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
P P+G G PG GPPP G GPPP G P GPP G P GPPPH G
Sbjct: 186 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPSQGGNKPQGPPPHPG 244
Query: 62 PGPCGPPP--GHGPGHPPP 78
P GPPP G+ P PPP
Sbjct: 245 K-PQGPPPQEGNKPQRPPP 262
Score = 58.9 bits (141), Expect = 8e-10
Identities = 38/80 (47%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
P P+G G PG GPP G P GPPPH G P GPPP G P PPP
Sbjct: 207 PPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPG-KPQGPPPQEGNKPQRPPPPGR 265
Query: 62 P-GPCGPPPGHGPGHPPPGP 80
P GP PPPG P P P P
Sbjct: 266 PQGP--PPPGGNPQQPLPPP 283
Score = 57.8 bits (138), Expect = 2e-09
Identities = 38/81 (46%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
P P+G G PG GPPP G GPPP G P GPPP G GPPPH G
Sbjct: 123 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPHPG 181
Query: 62 PGPCGPPP--GHGPGHPPPGP 80
P GPPP G+ PPP P
Sbjct: 182 K-PEGPPPQGGNQSQGPPPRP 201
Score = 57.4 bits (137), Expect = 2e-09
Identities = 38/81 (46%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
P P+G G PG GPPP G GPPPH G P GPPP G GPPP G
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPG-KPEGPPPQGGNQSQGPPPRPG 202
Query: 62 PGPCGPPP--GHGPGHPPPGP 80
P GPPP G+ PPP P
Sbjct: 203 K-PEGPPPQGGNQSQGPPPRP 222
Score = 55.1 bits (131), Expect = 1e-08
Identities = 36/80 (45%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGP 62
P G+ G HP GPPP G GPPP G P GPPP G GPPP G
Sbjct: 166 PPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPRPGK 224
Query: 63 GPCGPPP--GHGPGHPPPGP 80
P GPP G+ P PPP P
Sbjct: 225 -PEGPPSQGGNKPQGPPPHP 243
Score = 53.9 bits (128), Expect = 3e-08
Identities = 39/86 (45%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 3 PG-PKGHCHCGGH---GHPPGHC---GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCG 55
PG P+G GG+ G PP GPPP G GPPP G P GPPP G G
Sbjct: 96 PGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQG 154
Query: 56 PPPHHGPGPCGPPPGHGPGHPPPGPH 81
PPP G P GPPP G P PH
Sbjct: 155 PPPRPGK-PEGPPPQGGNQSQGPPPH 179
Score = 53.5 bits (127), Expect = 3e-08
Identities = 35/79 (44%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP-GPCGPPPGHGPGPCGPPPHHG 61
P G+ G HP GPPP G P PPP P GP PPPG P PPP
Sbjct: 229 PSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGP--PPPGGNPQQPLPPPAGK 286
Query: 62 P-GPCGPPPGHGPGHPPPG 79
P GP PP G P PP G
Sbjct: 287 PQGPPPPPQGGRPHRPPQG 305
Score = 51.6 bits (122), Expect = 1e-07
Identities = 36/81 (44%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
P P+G G PG G PP G GPPP G P GPPP G GPPP G
Sbjct: 81 PPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPRPG 139
Query: 62 PGPCGPPP--GHGPGHPPPGP 80
P GPPP G+ PPP P
Sbjct: 140 K-PEGPPPQGGNQSQGPPPRP 159
Score = 50.4 bits (119), Expect = 3e-07
Identities = 39/87 (44%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 3 PG-PKGHCHCGGH---GHPPGHC---GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCG 55
PG P+G GG+ G PP GPPP G GPPP G P G PP G G
Sbjct: 54 PGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGK-PEGQPPQGGNQSQG 112
Query: 56 PPPHHGPGPCGPPP--GHGPGHPPPGP 80
PPP G P GPPP G+ PPP P
Sbjct: 113 PPPRPGK-PEGPPPQGGNQSQGPPPRP 138
Score = 47.4 bits (111), Expect = 3e-06
Identities = 32/67 (47%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 17 PPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPP--GHGP 73
PPG G PP G GPPP G P GPPP G GPPP G P G PP G+
Sbjct: 53 PPGKPEGRPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPRPGK-PEGQPPQGGNQS 110
Query: 74 GHPPPGP 80
PPP P
Sbjct: 111 QGPPPRP 117
Score = 40.0 bits (92), Expect = 4e-04
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 15 GHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPP--GHG 72
G P G P G+ P PPP P G PP G GPPP G P GPPP G+
Sbjct: 34 GKPEGR-RPQGGNQPQRTPPPPGK---PEGRPPQGGNQSQGPPPRPGK-PEGPPPQGGNQ 88
Query: 73 PGHPPPGP 80
PPP P
Sbjct: 89 SQGPPPRP 96
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 59.7 bits (143), Expect = 5e-10
Identities = 35/72 (48%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 17 PPGHCGPPPGHG---------PG-PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCG 66
PPG PP G PG P GPPP G P GPPP G P GPPP G P G
Sbjct: 134 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGKKPQG 192
Query: 67 PPPGHGPGHPPP 78
PPP P PPP
Sbjct: 193 PPPPGKPQGPPP 204
Score = 59.3 bits (142), Expect = 6e-10
Identities = 35/72 (48%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 17 PPGHCGPPPGHG---------PG-PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCG 66
PPG PP G PG P GPPP G P GPPP G P GPPP G P G
Sbjct: 73 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNRPQG 131
Query: 67 PPPGHGPGHPPP 78
PPP P PPP
Sbjct: 132 PPPPGKPQGPPP 143
Score = 57.8 bits (138), Expect = 2e-09
Identities = 41/99 (41%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG------------------PC 43
P P+G G PPG GPPP G P GPPP P P
Sbjct: 39 PSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 98
Query: 44 GPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
GPPP G P GPPP G P GPPP G G PPPG
Sbjct: 99 GPPPQGGNQPQGPPPPPGK-PQGPPPQGGNRPQGPPPPG 136
Score = 57.8 bits (138), Expect = 2e-09
Identities = 41/99 (41%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG------------------PC 43
P P+G G PPG GPPP G P GPPP P P
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQ 220
Query: 44 GPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
GPPP G P GPPP G P GPPP G G PPPG
Sbjct: 221 GPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPG 258
Score = 57.4 bits (137), Expect = 2e-09
Identities = 41/99 (41%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG------------------PC 43
P P+G G PPG GPPP G P GPPP P P
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 159
Query: 44 GPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
GPPP G P GPPP G P GPPP G G PPPG
Sbjct: 160 GPPPQGGNQPQGPPPPPGK-PQGPPPQGGKKPQGPPPPG 197
Score = 57.0 bits (136), Expect = 3e-09
Identities = 37/87 (42%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP---H 59
P P+G P GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 141 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGKKPQGPPPPGKP 199
Query: 60 HGPGPCG-------PPPGHGPGHPPPG 79
GP P G PPG G PP G
Sbjct: 200 QGPPPQGDKSRSSQSPPGKPQGPPPQG 226
Score = 56.6 bits (135), Expect = 4e-09
Identities = 37/87 (42%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP---H 59
P P+G P GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 80 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNRPQGPPPPGKP 138
Query: 60 HGPGPCG-------PPPGHGPGHPPPG 79
GP P G PPG G PP G
Sbjct: 139 QGPPPQGDKSRSPRSPPGKPQGPPPQG 165
Score = 54.3 bits (129), Expect = 2e-08
Identities = 35/74 (47%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 17 PPGHCGPPPGHG---------PG-PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCG 66
PPG PP G PG P GPPP G P GPPP G P GPPP G P G
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQG 253
Query: 67 PPP-GHGPGHPPPG 79
PPP G G P G
Sbjct: 254 PPPPGKPQGPPAQG 267
Score = 53.9 bits (128), Expect = 3e-08
Identities = 41/94 (43%), Positives = 42/94 (44%), Gaps = 20/94 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG-PCGPPPGHG---------P 51
P P+G G PPG GPPP G P GPPP PG P GPP G P
Sbjct: 222 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP---PGKPQGPPAQGGSKSQSARSPP 278
Query: 52 G-PCGPPPHHGPGPCGPPPGHG-----PGHPPPG 79
G P GPP G P GPPP G P PP G
Sbjct: 279 GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAG 312
Score = 53.5 bits (127), Expect = 3e-08
Identities = 36/82 (43%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGP 62
P P+G P GPPP G P GPPP G P GPPP G P GPPP P
Sbjct: 202 PPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPP---P 257
Query: 63 G-PCGPPPGHG----PGHPPPG 79
G P GPP G PPG
Sbjct: 258 GKPQGPPAQGGSKSQSARSPPG 279
Score = 51.6 bits (122), Expect = 1e-07
Identities = 32/68 (47%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 22 GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP---HHGPGPCG-------PPPGH 71
GP P G P GPPP G P GPPP G P GPPP GP P G PPG
Sbjct: 38 GPSPQGGNKPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 96
Query: 72 GPGHPPPG 79
G PP G
Sbjct: 97 PQGPPPQG 104
Score = 50.1 bits (118), Expect = 4e-07
Identities = 27/50 (54%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 31 PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPP-GHGPGHPPPG 79
P GP P G P GPPP G P GPPP G P GPPP G G PP G
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQG 84
Score = 48.5 bits (114), Expect = 1e-06
Identities = 30/75 (40%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 17 PPGHCGPPPGHG----------PG-PCGPPPHHGPGPCGPPP---GHGPGPCGPPPHHGP 62
PPG PP G PG P GPP G P GPPP G+ P PP
Sbjct: 256 PPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 315
Query: 63 GPCGPPPGHGPGHPP 77
GP PP G P PP
Sbjct: 316 GPPRPPQGGRPSRPP 330
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 59.3 bits (142), Expect = 6e-10
Identities = 35/72 (48%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 17 PPGHCGPPPGHG---------PG-PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCG 66
PPG PP G PG P GPPP G P GPPP G P GPPP G P G
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQG 152
Query: 67 PPPGHGPGHPPP 78
PPP P PPP
Sbjct: 153 PPPPGKPQGPPP 164
Score = 59.3 bits (142), Expect = 6e-10
Identities = 40/88 (45%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG---------PG-PCGPPPHHGPGPCGPPPGHGPG 52
P P+G G P GPPP G PG P GPPP G P GPPP G
Sbjct: 266 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK- 324
Query: 53 PCGPPPHHGPGPCGPPP-GHGPGHPPPG 79
P GPPP G P GPPP G G PP G
Sbjct: 325 PQGPPPQGGNKPQGPPPPGKPQGPPPQG 352
Score = 58.5 bits (140), Expect = 1e-09
Identities = 39/89 (43%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP--- 58
P P+G PPG GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 162 PPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGK 220
Query: 59 HHGPGPCG--------PPPGHGPGHPPPG 79
GP P G PPG G PP G
Sbjct: 221 PQGPPPQGDNKSQSARSPPGKPQGPPPQG 249
Score = 58.5 bits (140), Expect = 1e-09
Identities = 39/83 (46%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
P P+G PPG GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 286 PPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPP--- 341
Query: 62 PG-PCGPPPGHG----PGHPPPG 79
PG P GPPP G PPG
Sbjct: 342 PGKPQGPPPQGGSKSRSARSPPG 364
Score = 58.2 bits (139), Expect = 1e-09
Identities = 39/89 (43%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP--- 58
P P+G PPG GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 224 PPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGK 282
Query: 59 HHGPGPCG--------PPPGHGPGHPPPG 79
GP P G PPG G PP G
Sbjct: 283 PQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311
Score = 57.8 bits (138), Expect = 2e-09
Identities = 39/86 (45%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 5 PKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP---HH 60
P+G G PPG GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 41 PQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQ 99
Query: 61 GPGPCG-------PPPGHGPGHPPPG 79
GP P G PPG G PP G
Sbjct: 100 GPPPQGDKSRSPRSPPGKPQGPPPQG 125
Score = 57.8 bits (138), Expect = 2e-09
Identities = 45/100 (45%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHG--------PG-PCGPPPHHG---------PG-P 42
P P+G G PPG GPPP G PG P GPPP G PG P
Sbjct: 245 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKP 304
Query: 43 CGPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
GPPP G P GPPP G P GPPP G G PPPG
Sbjct: 305 QGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPG 343
Score = 57.4 bits (137), Expect = 2e-09
Identities = 41/99 (41%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG------------------PC 43
P P+G G PPG GPPP G P GPPP P P
Sbjct: 60 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 119
Query: 44 GPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
GPPP G P GPPP G P GPPP G G PPPG
Sbjct: 120 GPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPG 157
Score = 57.4 bits (137), Expect = 2e-09
Identities = 42/91 (46%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG-PCGPPPGHG---------P 51
P P+G G PPG GPPP G P GPPP PG P GPPP P
Sbjct: 121 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP---PGKPQGPPPQGDNKSRSSRSPP 177
Query: 52 G-PCGPPPHHGPGPCGPPP--GHGPGHPPPG 79
G P GPPP G P GPPP G G PP G
Sbjct: 178 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Score = 57.0 bits (136), Expect = 3e-09
Identities = 36/75 (48%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 17 PPGHCGPPPGHG----------PG-PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPC 65
PPG PP G PG P GPPP G P GPPP G P GPPP G P
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQ 213
Query: 66 GPPP-GHGPGHPPPG 79
GPPP G G PP G
Sbjct: 214 GPPPPGKPQGPPPQG 228
Score = 57.0 bits (136), Expect = 3e-09
Identities = 41/100 (41%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG-------------------P 42
P P+G G PPG GPPP G P GPPP P P
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP 242
Query: 43 CGPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
GPPP G P GPPP G P GPPP G G PPPG
Sbjct: 243 QGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPG 281
Score = 57.0 bits (136), Expect = 3e-09
Identities = 36/75 (48%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 17 PPGHCGPPPGHG----------PG-PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPC 65
PPG PP G PG P GPPP G P GPPP G P GPPP G P
Sbjct: 217 PPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQ 275
Query: 66 GPPP-GHGPGHPPPG 79
GPPP G G PP G
Sbjct: 276 GPPPPGKPQGPPPQG 290
Score = 57.0 bits (136), Expect = 3e-09
Identities = 42/94 (44%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG-PCGPPPGHG---------P 51
P P+G G PPG GPPP G P GPPP PG P GPPP G P
Sbjct: 307 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP---PGKPQGPPPQGGSKSRSARSPP 363
Query: 52 G-PCGPPPHHGPGPCGPPPGHG-----PGHPPPG 79
G P GPP G P GPPP G P PP G
Sbjct: 364 GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAG 397
Score = 56.2 bits (134), Expect = 5e-09
Identities = 37/88 (42%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPH--- 59
P P+G P GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 101 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKP 159
Query: 60 HGPGPCGP--------PPGHGPGHPPPG 79
GP P G PPG G PP G
Sbjct: 160 QGPPPQGDNKSRSSRSPPGKPQGPPPQG 187
Score = 55.1 bits (131), Expect = 1e-08
Identities = 33/68 (48%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 15 GHPPGHCGPPPGHGPG----PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPG 70
G PP P G P P GPPP G P GPPP G P GPPP G P GPPP
Sbjct: 38 GAPPQGGNKPQGP-PSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPP 95
Query: 71 HGPGHPPP 78
P PPP
Sbjct: 96 GKPQGPPP 103
Score = 53.5 bits (127), Expect = 3e-08
Identities = 32/61 (52%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 22 GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG---PGHPPP 78
G PP G P GPP G P GPPP G P GPPP G P GPPP G G PPP
Sbjct: 38 GAPPQGGNKPQGPPSPPGK-PQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPP 95
Query: 79 G 79
G
Sbjct: 96 G 96
Score = 50.1 bits (118), Expect = 4e-07
Identities = 34/88 (38%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG---------PG-PCGPPPHHGPGPCGPPP---GH 49
P P+G G P GPPP G PG P GPP G P GPPP G+
Sbjct: 328 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGN 387
Query: 50 GPGPCGPPPHHGPGPCGPPPGHGPGHPP 77
P PP GP PP G P PP
Sbjct: 388 PQQPQAPPAGQPQGPPRPPQGGRPSRPP 415
Score = 47.4 bits (111), Expect = 3e-06
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 31 PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG-PGHPPP 78
P G PP G P GPP G P GPPP G P GPPP G P PPP
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGK-PQGPPPQGGNQPQGPPPPPGKPQGPPP 83
Score = 37.4 bits (85), Expect = 0.003
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 42 PCGPPPGHGPGPCGPPPHHGPGPCGPPP--GHGPGHPPPGP 80
P G PP G P GPP G P GPPP G+ P PPP P
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGK-PQGPPPQGGNQPQGPPPPP 75
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 58.9 bits (141), Expect = 8e-10
Identities = 40/87 (45%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------PGPCGPPPGHGPGPC 54
PGPKG G PPG GP G G CG PH G GP GPP PGP
Sbjct: 165 PGPKGDMGLTG---PPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPP--GPPGPS 219
Query: 55 GPPPHHG-PGPCGPPPGHGPGHPPPGP 80
GP H G PGP GPP GP P P
Sbjct: 220 GPLGHPGLPGPMGPPGLPGPPGPKGDP 246
Score = 43.5 bits (101), Expect = 4e-05
Identities = 36/89 (40%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG----PGPCGPPPGHG-PGPCGP 56
PGP GH G PG GPP G PG GPP G PG G G G G
Sbjct: 428 PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGS 487
Query: 57 PPHHG-PGPCGPPPGHGPGHP----PPGP 80
P G G G P PG P PPGP
Sbjct: 488 PGEKGEAGEKGNPGAEVPGLPGPEGPPGP 516
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/86 (38%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHG-PGPCGPP 57
PGPKG G G G GP G P G PGP G P G PGP GP
Sbjct: 523 PGPKGEAGLDGAKGEKGFQGEKGDRGP--LGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 580
Query: 58 PHHG----PGPCGP------PPGHGP 73
G PG GP P HGP
Sbjct: 581 GERGSKGDPGMTGPTGAAGLPGLHGP 606
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG----PGPCG---PPPHHGP----GPC 65
P +C P P PG G GP G P G PGP G P H GP G
Sbjct: 115 PGCNCPPAPQGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT 174
Query: 66 GPPPGHGP 73
GPP GP
Sbjct: 175 GPPGQPGP 182
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHG-PGPCGPPPH 59
+ G G+ GG G P PPG PGP GP G G GPP G G G
Sbjct: 310 EKGDAGNSIGGGRGEPG-----PPGL-PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 363
Query: 60 HGP-GPCGP--PPGHG 72
GP GP G PG G
Sbjct: 364 QGPDGPKGSKGEPGKG 379
Score = 30.4 bits (67), Expect = 0.32
Identities = 35/103 (33%), Positives = 35/103 (33%), Gaps = 30/103 (29%)
Query: 3 PGPKGHCHCGGHGHPPGHCGP------PPGHGPGPCGPPPHHGPGPCGPPPGHG-PGPCG 55
PG KG G PG G P PG GP GP GPP G PGP G
Sbjct: 473 PGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP-----EGPPGPPGLQGVPGPKG 527
Query: 56 PPPHHGP-------------GPCGPPPGHG----PGHP-PPGP 80
G GP G P G PG P PGP
Sbjct: 528 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 570
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 12/54 (22%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPP---PHHG----PGPCGPPPGHG 50
GP GH G PPG GP PGP G P +HG G G P HG
Sbjct: 220 GPLGHPGLPGPMGPPGLPGP-----PGPKGDPGIQGYHGRKGERGMPGMPGKHG 268
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 58.9 bits (141), Expect = 8e-10
Identities = 40/87 (45%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------PGPCGPPPGHGPGPC 54
PGPKG G PPG GP G G CG PH G GP GPP PGP
Sbjct: 174 PGPKGDMGLTG---PPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPP--GPPGPS 228
Query: 55 GPPPHHG-PGPCGPPPGHGPGHPPPGP 80
GP H G PGP GPP GP P P
Sbjct: 229 GPLGHPGLPGPMGPPGLPGPPGPKGDP 255
Score = 43.5 bits (101), Expect = 4e-05
Identities = 36/89 (40%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG----PGPCGPPPGHG-PGPCGP 56
PGP GH G PG GPP G PG GPP G PG G G G G
Sbjct: 437 PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGS 496
Query: 57 PPHHG-PGPCGPPPGHGPGHP----PPGP 80
P G G G P PG P PPGP
Sbjct: 497 PGEKGEAGEKGNPGAEVPGLPGPEGPPGP 525
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/86 (38%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHG-PGPCGPP 57
PGPKG G G G GP G P G PGP G P G PGP GP
Sbjct: 532 PGPKGEAGLDGAKGEKGFQGEKGDRGP--LGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 589
Query: 58 PHHG----PGPCGP------PPGHGP 73
G PG GP P HGP
Sbjct: 590 GERGSKGDPGMTGPTGAAGLPGLHGP 615
Score = 33.1 bits (74), Expect = 0.049
Identities = 31/77 (40%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 9 CHC-----GGHGHP--PGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGP-GPCGPPPHH 60
C+C G G P PG G GP GPP PG G P GP G G P H
Sbjct: 117 CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQ--PGTRGFPGFPGPIGLDGKPGHP 174
Query: 61 GP----GPCGPPPGHGP 73
GP G GPP GP
Sbjct: 175 GPKGDMGLTGPPGQPGP 191
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHG-PGPCGPPPH 59
+ G G+ GG G P PPG PGP GP G G GPP G G G
Sbjct: 319 EKGDAGNSIGGGRGEPG-----PPGL-PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 372
Query: 60 HGP-GPCGP--PPGHG 72
GP GP G PG G
Sbjct: 373 QGPDGPKGSKGEPGKG 388
Score = 30.4 bits (67), Expect = 0.32
Identities = 35/103 (33%), Positives = 35/103 (33%), Gaps = 30/103 (29%)
Query: 3 PGPKGHCHCGGHGHPPGHCGP------PPGHGPGPCGPPPHHGPGPCGPPPGHG-PGPCG 55
PG KG G PG G P PG GP GP GPP G PGP G
Sbjct: 482 PGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP-----EGPPGPPGLQGVPGPKG 536
Query: 56 PPPHHGP-------------GPCGPPPGHG----PGHP-PPGP 80
G GP G P G PG P PGP
Sbjct: 537 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 579
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 12/54 (22%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPP---PHHG----PGPCGPPPGHG 50
GP GH G PPG GP PGP G P +HG G G P HG
Sbjct: 229 GPLGHPGLPGPMGPPGLPGP-----PGPKGDPGIQGYHGRKGERGMPGMPGKHG 277
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 58.9 bits (141), Expect = 8e-10
Identities = 40/87 (45%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------PGPCGPPPGHGPGPC 54
PGPKG G PPG GP G G CG PH G GP GPP PGP
Sbjct: 186 PGPKGDMGLTG---PPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPP--GPPGPS 240
Query: 55 GPPPHHG-PGPCGPPPGHGPGHPPPGP 80
GP H G PGP GPP GP P P
Sbjct: 241 GPLGHPGLPGPMGPPGLPGPPGPKGDP 267
Score = 43.5 bits (101), Expect = 4e-05
Identities = 36/89 (40%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG----PGPCGPPPGHG-PGPCGP 56
PGP GH G PG GPP G PG GPP G PG G G G G
Sbjct: 449 PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGS 508
Query: 57 PPHHG-PGPCGPPPGHGPGHP----PPGP 80
P G G G P PG P PPGP
Sbjct: 509 PGEKGEAGEKGNPGAEVPGLPGPEGPPGP 537
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/86 (38%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHG-PGPCGPP 57
PGPKG G G G GP G P G PGP G P G PGP GP
Sbjct: 544 PGPKGEAGLDGAKGEKGFQGEKGDRGP--LGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 601
Query: 58 PHHG----PGPCGP------PPGHGP 73
G PG GP P HGP
Sbjct: 602 GERGSKGDPGMTGPTGAAGLPGLHGP 627
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/76 (40%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGP-GPCGPPPHHG 61
PG KG G PG G GP GPP PG G P GP G G P H G
Sbjct: 133 PGDKGAIGMPGRVGSPGDAGLSI---IGPRGPPGQ--PGTRGFPGFPGPIGLDGKPGHPG 187
Query: 62 P----GPCGPPPGHGP 73
P G GPP GP
Sbjct: 188 PKGDMGLTGPPGQPGP 203
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHG-PGPCGPPPH 59
+ G G+ GG G P PPG PGP GP G G GPP G G G
Sbjct: 331 EKGDAGNSIGGGRGEPG-----PPGL-PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 384
Query: 60 HGP-GPCGP--PPGHG 72
GP GP G PG G
Sbjct: 385 QGPDGPKGSKGEPGKG 400
Score = 30.4 bits (67), Expect = 0.32
Identities = 35/103 (33%), Positives = 35/103 (33%), Gaps = 30/103 (29%)
Query: 3 PGPKGHCHCGGHGHPPGHCGP------PPGHGPGPCGPPPHHGPGPCGPPPGHG-PGPCG 55
PG KG G PG G P PG GP GP GPP G PGP G
Sbjct: 494 PGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP-----EGPPGPPGLQGVPGPKG 548
Query: 56 PPPHHGP-------------GPCGPPPGHG----PGHP-PPGP 80
G GP G P G PG P PGP
Sbjct: 549 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 591
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 12/54 (22%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPP---PHHG----PGPCGPPPGHG 50
GP GH G PPG GP PGP G P +HG G G P HG
Sbjct: 241 GPLGHPGLPGPMGPPGLPGP-----PGPKGDPGIQGYHGRKGERGMPGMPGKHG 289
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 58.2 bits (139), Expect = 1e-09
Identities = 35/67 (52%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 17 PPGHCGPPP--GHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPG 74
P G G P G+GPG G PP G GP P G PG G PP GPGP GP PG GP
Sbjct: 782 PSGFGGGPQNFGNGPGSLGGPPGFGSGP--PGLGSAPGHLGGPPAFGPGP-GPGPGPGPI 838
Query: 75 H--PPPG 79
H PPG
Sbjct: 839 HIGGPPG 845
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 13 GHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP 58
G G PGH G PP GPGP GP P GP G PPG P P
Sbjct: 811 GLGSAPGHLGGPPAFGPGP-GPGPGPGPIHIGGPPGFASSSGKPGP 855
Score = 44.7 bits (104), Expect = 2e-05
Identities = 33/75 (44%), Positives = 33/75 (44%), Gaps = 22/75 (29%)
Query: 12 GGHGHPPGH-CGPP-----PGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPC 65
G G PPG GPP PGH G PP GPGP GPGP GP P H
Sbjct: 797 GSLGGPPGFGSGPPGLGSAPGH----LGGPPAFGPGP-------GPGP-GPGPIH----I 840
Query: 66 GPPPGHGPGHPPPGP 80
G PPG PGP
Sbjct: 841 GGPPGFASSSGKPGP 855
Score = 42.7 bits (99), Expect = 6e-05
Identities = 31/80 (38%), Positives = 33/80 (41%), Gaps = 21/80 (26%)
Query: 13 GHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH- 71
G G P + P G G GP +GPG G PPG G GP G G PGH
Sbjct: 771 GFGGGPNNLSGPSGFGGGPQNFG--NGPGSLGGPPGFGSGPPG---------LGSAPGHL 819
Query: 72 ------GPG---HPPPGPHH 82
GPG P PGP H
Sbjct: 820 GGPPAFGPGPGPGPGPGPIH 839
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPG--HGPGHP 76
PPP P P P P P PP P G PP + P P P P +G G P
Sbjct: 211 PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLN-PPPVAPLPAGMNGSGAP 265
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/67 (37%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 23 PPPGHGPGPCGP--PPHHGPGPCGPP------PGHGPGP--CGPPPHHGPGPCGPPPGHG 72
PPPG G G G P G G P PG G GP P G GP G G
Sbjct: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPG 797
Query: 73 PGHPPPG 79
PPG
Sbjct: 798 SLGGPPG 804
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 18 PGHCGPPPGHGPGPCGP--PPHHGPGPCG-PPPGHGPGPCGPPPHHGPGPCGPP------ 68
P + PPP P P P PP P PPP P P P P P PP
Sbjct: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP 240
Query: 69 -PGHGPGHPPP 78
G P +PPP
Sbjct: 241 MSGMPPLNPPP 251
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 57 PPHHGPGPCGPPPGHGPGHPPPG 79
PP + PG G GP PPPG
Sbjct: 719 PPFNFPGNFGGSNAFGPPIPPPG 741
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 58.2 bits (139), Expect = 1e-09
Identities = 35/67 (52%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 17 PPGHCGPPP--GHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPG 74
P G G P G+GPG G PP G GP P G PG G PP GPGP GP PG GP
Sbjct: 782 PSGFGGGPQNFGNGPGSLGGPPGFGSGP--PGLGSAPGHLGGPPAFGPGP-GPGPGPGPI 838
Query: 75 H--PPPG 79
H PPG
Sbjct: 839 HIGGPPG 845
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 13 GHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP 58
G G PGH G PP GPGP GP P GP G PPG P P
Sbjct: 811 GLGSAPGHLGGPPAFGPGP-GPGPGPGPIHIGGPPGFASSSGKPGP 855
Score = 44.7 bits (104), Expect = 2e-05
Identities = 33/75 (44%), Positives = 33/75 (44%), Gaps = 22/75 (29%)
Query: 12 GGHGHPPGH-CGPP-----PGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPC 65
G G PPG GPP PGH G PP GPGP GPGP GP P H
Sbjct: 797 GSLGGPPGFGSGPPGLGSAPGH----LGGPPAFGPGP-------GPGP-GPGPIH----I 840
Query: 66 GPPPGHGPGHPPPGP 80
G PPG PGP
Sbjct: 841 GGPPGFASSSGKPGP 855
Score = 42.7 bits (99), Expect = 6e-05
Identities = 31/80 (38%), Positives = 33/80 (41%), Gaps = 21/80 (26%)
Query: 13 GHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH- 71
G G P + P G G GP +GPG G PPG G GP G G PGH
Sbjct: 771 GFGGGPNNLSGPSGFGGGPQNFG--NGPGSLGGPPGFGSGPPG---------LGSAPGHL 819
Query: 72 ------GPG---HPPPGPHH 82
GPG P PGP H
Sbjct: 820 GGPPAFGPGPGPGPGPGPIH 839
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPG--HGPGHP 76
PPP P P P P P PP P G PP + P P P P +G G P
Sbjct: 211 PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLN-PPPVAPLPAGMNGSGAP 265
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/67 (37%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 23 PPPGHGPGPCGP--PPHHGPGPCGPP------PGHGPGP--CGPPPHHGPGPCGPPPGHG 72
PPPG G G G P G G P PG G GP P G GP G G
Sbjct: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPG 797
Query: 73 PGHPPPG 79
PPG
Sbjct: 798 SLGGPPG 804
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 18 PGHCGPPPGHGPGPCGP--PPHHGPGPCG-PPPGHGPGPCGPPPHHGPGPCGPP------ 68
P + PPP P P P PP P PPP P P P P P PP
Sbjct: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP 240
Query: 69 -PGHGPGHPPP 78
G P +PPP
Sbjct: 241 MSGMPPLNPPP 251
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 57 PPHHGPGPCGPPPGHGPGHPPPG 79
PP + PG G GP PPPG
Sbjct: 719 PPFNFPGNFGGSNAFGPPIPPPG 741
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 57.8 bits (138), Expect = 2e-09
Identities = 36/80 (45%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHG----PGPC 54
PGP G G P G GPP GP GP G PGP GPP G GP
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPP-----GPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1199
Query: 55 GPPPHHGPGPCGPPPGHGPG 74
GPP + PGP GPP GPG
Sbjct: 1200 GPPGN--PGPPGPPGPPGPG 1217
Score = 57.0 bits (136), Expect = 3e-09
Identities = 40/89 (44%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPP-PHHGPGPCGPPPGHG----PGPCGPP 57
G KGH G PG GP G GP GP P PGP GP G PGP GPP
Sbjct: 1128 GLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPP 1187
Query: 58 PHHG----PGPCGPPPGHGPGHP--PPGP 80
G GP GPP GP P PPGP
Sbjct: 1188 GPRGRSGETGPAGPPGNPGPPGPPGPPGP 1216
Score = 47.0 bits (110), Expect = 3e-06
Identities = 35/85 (41%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP-PGHGPGPCGPP-PHHGPGPCGPPPGHG----PGPCGP 56
PG G G PPG G P P PGP G P G GPP G GP GP
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 952
Query: 57 PPHHG-PGPCGPPPGHGPGHPPPGP 80
P G PG GP G PPGP
Sbjct: 953 PGEKGEPGDDGPSGAEG----PPGP 973
Score = 44.7 bits (104), Expect = 2e-05
Identities = 33/87 (37%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-------PGPCGPPPHHG-PGPCGPPPGHG-PGP 53
PGP G G PPG G P G PG GP G PG G P G GP
Sbjct: 659 PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGP 718
Query: 54 CGPP-------PHHGPGPCGPPPGHGP 73
G P P GP GPP GP
Sbjct: 719 RGLPGTPGTDGPKGASGPAGPPGAQGP 745
Score = 43.1 bits (100), Expect = 5e-05
Identities = 37/111 (33%), Positives = 37/111 (33%), Gaps = 40/111 (36%)
Query: 4 GPKGHCHCGGHGHPPGHCGPP----PGHGPGPCGPPPHHGP-GPCGPPPGHG-------- 50
GPKG G PPG G P P PG G P GP G GPP G
Sbjct: 927 GPKG---ARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIV 983
Query: 51 --------------PGPCGPPPHHG----------PGPCGPPPGHGPGHPP 77
PGP G P G PGP GPP GP P
Sbjct: 984 GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 1034
Score = 43.1 bits (100), Expect = 5e-05
Identities = 32/81 (39%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGP-GPCGPPPH 59
+PG +G G PPG GPP GP G P G PG GPP G G G
Sbjct: 1003 EPGKQGAPGASGDRGPPGPVGPPGL--TGPAGEPGREGSPGADGPPGRDGAAGVKGDRGE 1060
Query: 60 HG----PGPCGPPPGHGPGHP 76
G PG GPP GP P
Sbjct: 1061 TGAVGAPGAPGPPGSPGPAGP 1081
Score = 43.1 bits (100), Expect = 5e-05
Identities = 30/72 (41%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHGPGPCGPPPGHGPG-PCGPP 57
PGP G G PG GPP G GP GPP + PGP GPP GPG
Sbjct: 1166 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN--PGPPGPPGPPGPGIDMSAF 1223
Query: 58 PHHGPGPCGPPP 69
GP GP P
Sbjct: 1224 AGLGPREKGPDP 1235
Score = 42.7 bits (99), Expect = 6e-05
Identities = 42/126 (33%), Positives = 44/126 (34%), Gaps = 48/126 (38%)
Query: 3 PGPKGHCH---CGGHGHPPGHCGPP--PGHG-----------------------PGPCGP 34
PGP+G G+ PPG GPP PG G GP GP
Sbjct: 146 PGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGP 205
Query: 35 P-PHHGPGPCGPPPGHG----PGPCGPPPHHGP-GPCGPP--------------PGHGPG 74
P PGP G P G PG G P GP GP GPP PG
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 265
Query: 75 HPPPGP 80
PPGP
Sbjct: 266 RGPPGP 271
Score = 42.7 bits (99), Expect = 6e-05
Identities = 36/96 (37%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP--------PGHG--PGPCGP---PPHHG-PGPCGPPPG 48
PG KGH G G G P PG PGP GP P G GP G
Sbjct: 284 PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA 343
Query: 49 HG----PGPCGPP----PHHGPGPCGPPPGHGPGHP 76
G PGP GPP P GPG G P G P
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 379
Score = 42.7 bits (99), Expect = 6e-05
Identities = 37/98 (37%), Positives = 37/98 (37%), Gaps = 28/98 (28%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-------------PGPCGPPPHHGPGPCGPPPGH 49
PGP G PPG G P G PGP GP PGP GP
Sbjct: 830 PGP------AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSG--APGPQGPTGVT 881
Query: 50 GP----GPCGPPPHHG-PGPCGP--PPGHGPGHPPPGP 80
GP G GPP G PG G PPG PPGP
Sbjct: 882 GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 919
Score = 41.2 bits (95), Expect = 2e-04
Identities = 31/81 (38%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP--PGHG--PGPCGPPPHHG----PGPCGPPPGHGP--G 52
PG KG G PG GP PG GP G G PGP GPP GP G
Sbjct: 305 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG 364
Query: 53 PCGPPPHHGPGPCGPPPGHGP 73
P P G GP GP
Sbjct: 365 PGFPGAPGAKGEAGPTGARGP 385
Score = 41.2 bits (95), Expect = 2e-04
Identities = 36/107 (33%), Positives = 37/107 (34%), Gaps = 30/107 (28%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGP--GPCGPPPHHGPGPCGPPPGHGP----GPCGPP 57
GP G G+ PG GPP GP GP P G GP GP GP G P
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Query: 58 PHHG-PGPCG-------------------PPPGHGPGHP----PPGP 80
G PGP G P PG P PPGP
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 442
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGP--PPGHGPGPCGPPPH 59
PGP+G G P G GP G GPP G PG G PPG P GPP
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQ--GPPGATGFPGAAGRVGPPGSNGNP-GPPGP 919
Query: 60 HGP-GPCGPPPGHGPGHPP 77
GP G GP G PP
Sbjct: 920 PGPSGKDGPKGARGDSGPP 938
Score = 40.0 bits (92), Expect = 4e-04
Identities = 36/108 (33%), Positives = 36/108 (33%), Gaps = 37/108 (34%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGP------------PPHHG------- 39
PG G G PPG G P GP GP GP P G
Sbjct: 938 PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL 997
Query: 40 PGPCGPPPGHG----------PGPCGPP----PHHGPGPCGPPPGHGP 73
PGP G P G PGP GPP P PG G P GP
Sbjct: 998 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Score = 38.9 bits (89), Expect = 9e-04
Identities = 39/107 (36%), Positives = 39/107 (36%), Gaps = 33/107 (30%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP----------GPCGPPPGHG-- 50
GPKG G PPG GPP G PG G GP GP G P G
Sbjct: 729 GPKG---ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 785
Query: 51 --PGPCGPPPHHG----------PGPCGPPPGHG-PGH----PPPGP 80
GP GPP G PGP G G PG PPGP
Sbjct: 786 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP 832
Score = 38.5 bits (88), Expect = 0.001
Identities = 35/97 (36%), Positives = 36/97 (37%), Gaps = 25/97 (25%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP----------PGHGPGPCGPPPHHGPGPCGP------- 45
PGP+G G P G G P P PGP G P PGP G
Sbjct: 440 PGPQG---ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPGPAGEEGKRGAR 494
Query: 46 -PPGHGPGPCGPPPHHG-PGPCGPPPGHGPGHPPPGP 80
PG G GP GPP G PG G P G P P
Sbjct: 495 GEPG-GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 530
Score = 38.5 bits (88), Expect = 0.001
Identities = 36/97 (37%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHG----PGPCG 55
+PG G G PG+ G P G GP G P GP G GP +G PG G
Sbjct: 496 EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG 555
Query: 56 PPPHHG----PGPCGPPPGHGP-------GHP-PPGP 80
P G PG GP GP G P PPGP
Sbjct: 556 LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 592
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/77 (40%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP----GPCGPP-PGHGPGPCGPP 57
GPKG G P G G G G GP GPP G G GPP P G G P
Sbjct: 762 GPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAP 821
Query: 58 PHHGP-GPCGPPPGHGP 73
G GP GP GP
Sbjct: 822 GERGETGPPGPAGFAGP 838
Score = 38.1 bits (87), Expect = 0.002
Identities = 35/91 (38%), Positives = 35/91 (38%), Gaps = 19/91 (20%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-PGPCGPPPGHG-------PGP 53
PGP G G G GPP GP G GPP G PG G G PGP
Sbjct: 809 PGPAGSAGARGAPGERGETGPP---GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 865
Query: 54 CGPPPHHGPGPCGP-----PPGHGPGHPPPG 79
GP PGP GP P G PPG
Sbjct: 866 QGPSG--APGPQGPTGVTGPKGARGAQGPPG 894
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/81 (41%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP-GPCGPPPGHG-PGPCG----P 56
PGPKG G G GP PGP GP GP G G G PGP G P
Sbjct: 100 PGPKGQK--GEPGDIKDIVGPKGP--PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP 155
Query: 57 PPHHGPGPCGPPPGHGPGHPP 77
PGP GPP GP PP
Sbjct: 156 GTPGNPGPPGPP---GPPGPP 173
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/77 (41%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
PGP G G PG G P GP GP GP PGP G P G G P G
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP-----PGPPGKP--GDDGEAGKPGKAG 264
Query: 62 P-GPCGPPPGHG-PGHP 76
GP GP G PG P
Sbjct: 265 ERGPPGPQGARGFPGTP 281
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/79 (41%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHGP-GPCGPPPH 59
PGPKG G G G P G PG G GP GP GP G G GP
Sbjct: 605 PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 664
Query: 60 HG-PGPCGPPPGHGPGHPP 77
G PGP GPP G G P
Sbjct: 665 QGLPGPPGPP---GEGGKP 680
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/84 (35%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGPGPCGPPPGHG--PGPCGPPPH 59
PGP G G PPG G G PG G GP PPG PG G
Sbjct: 794 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE 853
Query: 60 HG-------PGPCGPPPGHGPGHP 76
G PGP GP GP P
Sbjct: 854 AGQKGDAGAPGPQGPSGAPGPQGP 877
Score = 35.4 bits (80), Expect = 0.010
Identities = 32/88 (36%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-PGPCGPPPGHG-------PGP 53
PGP G G G GP +G PG G G PG G P G PGP
Sbjct: 587 PGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGP 646
Query: 54 CGPPPHHG----PGPCGPPPGHGPGHPP 77
GP G PGP G GP PP
Sbjct: 647 AGPAGERGEQGAPGPSGFQGLPGPPGPP 674
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/77 (38%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG----PGPCGPP-----PGHGP 51
+ GP G G P G G P GP G G P G G G P PG P
Sbjct: 376 EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF-P 434
Query: 52 GPCGPP-PHHGPGPCGP 67
GP GPP P GP GP
Sbjct: 435 GPRGPPGPQGATGPLGP 451
Score = 34.7 bits (78), Expect = 0.017
Identities = 33/98 (33%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 3 PGPKGHCHCGGHGHP-----PGHCGPPPGHGP----GPCGPPPHHG-PGPCGPP------ 46
PGP G GG G P G GP GP GP G P G PGP G
Sbjct: 356 PGPVGPA--GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 413
Query: 47 -----------PGHGPGPCGPPPHHGPGPCGPPPGHGP 73
PG P P P PGP G GP
Sbjct: 414 GIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGP 451
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 57.8 bits (138), Expect = 2e-09
Identities = 36/80 (45%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHG----PGPC 54
PGP G G P G GPP GP GP G PGP GPP G GP
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPP-----GPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1130
Query: 55 GPPPHHGPGPCGPPPGHGPG 74
GPP + PGP GPP GPG
Sbjct: 1131 GPPGN--PGPPGPPGPPGPG 1148
Score = 57.0 bits (136), Expect = 3e-09
Identities = 40/89 (44%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPP-PHHGPGPCGPPPGHG----PGPCGPP 57
G KGH G PG GP G GP GP P PGP GP G PGP GPP
Sbjct: 1059 GLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPP 1118
Query: 58 PHHG----PGPCGPPPGHGPGHP--PPGP 80
G GP GPP GP P PPGP
Sbjct: 1119 GPRGRSGETGPAGPPGNPGPPGPPGPPGP 1147
Score = 47.0 bits (110), Expect = 3e-06
Identities = 35/85 (41%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP-PGHGPGPCGPP-PHHGPGPCGPPPGHG----PGPCGP 56
PG G G PPG G P P PGP G P G GPP G GP GP
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 883
Query: 57 PPHHG-PGPCGPPPGHGPGHPPPGP 80
P G PG GP G PPGP
Sbjct: 884 PGEKGEPGDDGPSGAEG----PPGP 904
Score = 44.7 bits (104), Expect = 2e-05
Identities = 33/87 (37%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-------PGPCGPPPHHG-PGPCGPPPGHG-PGP 53
PGP G G PPG G P G PG GP G PG G P G GP
Sbjct: 590 PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGP 649
Query: 54 CGPP-------PHHGPGPCGPPPGHGP 73
G P P GP GPP GP
Sbjct: 650 RGLPGTPGTDGPKGASGPAGPPGAQGP 676
Score = 43.1 bits (100), Expect = 5e-05
Identities = 37/111 (33%), Positives = 37/111 (33%), Gaps = 40/111 (36%)
Query: 4 GPKGHCHCGGHGHPPGHCGPP----PGHGPGPCGPPPHHGP-GPCGPPPGHG-------- 50
GPKG G PPG G P P PG G P GP G GPP G
Sbjct: 858 GPKG---ARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIV 914
Query: 51 --------------PGPCGPPPHHG----------PGPCGPPPGHGPGHPP 77
PGP G P G PGP GPP GP P
Sbjct: 915 GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 965
Score = 43.1 bits (100), Expect = 5e-05
Identities = 32/81 (39%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGP-GPCGPPPH 59
+PG +G G PPG GPP GP G P G PG GPP G G G
Sbjct: 934 EPGKQGAPGASGDRGPPGPVGPPGL--TGPAGEPGREGSPGADGPPGRDGAAGVKGDRGE 991
Query: 60 HG----PGPCGPPPGHGPGHP 76
G PG GPP GP P
Sbjct: 992 TGAVGAPGAPGPPGSPGPAGP 1012
Score = 43.1 bits (100), Expect = 5e-05
Identities = 30/72 (41%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHGPGPCGPPPGHGPG-PCGPP 57
PGP G G PG GPP G GP GPP + PGP GPP GPG
Sbjct: 1097 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN--PGPPGPPGPPGPGIDMSAF 1154
Query: 58 PHHGPGPCGPPP 69
GP GP P
Sbjct: 1155 AGLGPREKGPDP 1166
Score = 42.7 bits (99), Expect = 6e-05
Identities = 42/126 (33%), Positives = 44/126 (34%), Gaps = 48/126 (38%)
Query: 3 PGPKGHCH---CGGHGHPPGHCGPP--PGHG-----------------------PGPCGP 34
PGP+G G+ PPG GPP PG G GP GP
Sbjct: 77 PGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGP 136
Query: 35 P-PHHGPGPCGPPPGHG----PGPCGPPPHHGP-GPCGPP--------------PGHGPG 74
P PGP G P G PG G P GP GP GPP PG
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 196
Query: 75 HPPPGP 80
PPGP
Sbjct: 197 RGPPGP 202
Score = 42.7 bits (99), Expect = 6e-05
Identities = 36/96 (37%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP--------PGHG--PGPCGP---PPHHG-PGPCGPPPG 48
PG KGH G G G P PG PGP GP P G GP G
Sbjct: 215 PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA 274
Query: 49 HG----PGPCGPP----PHHGPGPCGPPPGHGPGHP 76
G PGP GPP P GPG G P G P
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 310
Score = 42.7 bits (99), Expect = 6e-05
Identities = 37/98 (37%), Positives = 37/98 (37%), Gaps = 28/98 (28%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-------------PGPCGPPPHHGPGPCGPPPGH 49
PGP G PPG G P G PGP GP PGP GP
Sbjct: 761 PGP------AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSG--APGPQGPTGVT 812
Query: 50 GP----GPCGPPPHHG-PGPCGP--PPGHGPGHPPPGP 80
GP G GPP G PG G PPG PPGP
Sbjct: 813 GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 850
Score = 41.2 bits (95), Expect = 2e-04
Identities = 31/81 (38%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP--PGHG--PGPCGPPPHHG----PGPCGPPPGHGP--G 52
PG KG G PG GP PG GP G G PGP GPP GP G
Sbjct: 236 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG 295
Query: 53 PCGPPPHHGPGPCGPPPGHGP 73
P P G GP GP
Sbjct: 296 PGFPGAPGAKGEAGPTGARGP 316
Score = 41.2 bits (95), Expect = 2e-04
Identities = 36/107 (33%), Positives = 37/107 (34%), Gaps = 30/107 (28%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGP--GPCGPPPHHGPGPCGPPPGHGP----GPCGPP 57
GP G G+ PG GPP GP GP P G GP GP GP G P
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Query: 58 PHHG-PGPCG-------------------PPPGHGPGHP----PPGP 80
G PGP G P PG P PPGP
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 373
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGP--PPGHGPGPCGPPPH 59
PGP+G G P G GP G GPP G PG G PPG P GPP
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQ--GPPGATGFPGAAGRVGPPGSNGNP-GPPGP 850
Query: 60 HGP-GPCGPPPGHGPGHPP 77
GP G GP G PP
Sbjct: 851 PGPSGKDGPKGARGDSGPP 869
Score = 40.0 bits (92), Expect = 4e-04
Identities = 36/108 (33%), Positives = 36/108 (33%), Gaps = 37/108 (34%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGP------------PPHHG------- 39
PG G G PPG G P GP GP GP P G
Sbjct: 869 PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL 928
Query: 40 PGPCGPPPGHG----------PGPCGPP----PHHGPGPCGPPPGHGP 73
PGP G P G PGP GPP P PG G P GP
Sbjct: 929 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Score = 38.9 bits (89), Expect = 9e-04
Identities = 39/107 (36%), Positives = 39/107 (36%), Gaps = 33/107 (30%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP----------GPCGPPPGHG-- 50
GPKG G PPG GPP G PG G GP GP G P G
Sbjct: 660 GPKG---ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 716
Query: 51 --PGPCGPPPHHG----------PGPCGPPPGHG-PGH----PPPGP 80
GP GPP G PGP G G PG PPGP
Sbjct: 717 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP 763
Score = 38.5 bits (88), Expect = 0.001
Identities = 35/97 (36%), Positives = 36/97 (37%), Gaps = 25/97 (25%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP----------PGHGPGPCGPPPHHGPGPCGP------- 45
PGP+G G P G G P P PGP G P PGP G
Sbjct: 371 PGPQG---ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPGPAGEEGKRGAR 425
Query: 46 -PPGHGPGPCGPPPHHG-PGPCGPPPGHGPGHPPPGP 80
PG G GP GPP G PG G P G P P
Sbjct: 426 GEPG-GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 461
Score = 38.5 bits (88), Expect = 0.001
Identities = 36/97 (37%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHG----PGPCG 55
+PG G G PG+ G P G GP G P GP G GP +G PG G
Sbjct: 427 EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG 486
Query: 56 PPPHHG----PGPCGPPPGHGP-------GHP-PPGP 80
P G PG GP GP G P PPGP
Sbjct: 487 LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 523
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/77 (40%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP----GPCGPP-PGHGPGPCGPP 57
GPKG G P G G G G GP GPP G G GPP P G G P
Sbjct: 693 GPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAP 752
Query: 58 PHHGP-GPCGPPPGHGP 73
G GP GP GP
Sbjct: 753 GERGETGPPGPAGFAGP 769
Score = 38.1 bits (87), Expect = 0.002
Identities = 35/91 (38%), Positives = 35/91 (38%), Gaps = 19/91 (20%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-PGPCGPPPGHG-------PGP 53
PGP G G G GPP GP G GPP G PG G G PGP
Sbjct: 740 PGPAGSAGARGAPGERGETGPP---GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 796
Query: 54 CGPPPHHGPGPCGP-----PPGHGPGHPPPG 79
GP PGP GP P G PPG
Sbjct: 797 QGPSG--APGPQGPTGVTGPKGARGAQGPPG 825
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/81 (41%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP-GPCGPPPGHG-PGPCG----P 56
PGPKG G G GP PGP GP GP G G G PGP G P
Sbjct: 31 PGPKGQK--GEPGDIKDIVGPKGP--PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP 86
Query: 57 PPHHGPGPCGPPPGHGPGHPP 77
PGP GPP GP PP
Sbjct: 87 GTPGNPGPPGPP---GPPGPP 104
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/77 (41%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
PGP G G PG G P GP GP GP PGP G P G G P G
Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP-----PGPPGKP--GDDGEAGKPGKAG 195
Query: 62 P-GPCGPPPGHG-PGHP 76
GP GP G PG P
Sbjct: 196 ERGPPGPQGARGFPGTP 212
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/79 (41%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHGP-GPCGPPPH 59
PGPKG G G G P G PG G GP GP GP G G GP
Sbjct: 536 PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 595
Query: 60 HG-PGPCGPPPGHGPGHPP 77
G PGP GPP G G P
Sbjct: 596 QGLPGPPGPP---GEGGKP 611
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/84 (35%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGPGPCGPPPGHG--PGPCGPPPH 59
PGP G G PPG G G PG G GP PPG PG G
Sbjct: 725 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE 784
Query: 60 HG-------PGPCGPPPGHGPGHP 76
G PGP GP GP P
Sbjct: 785 AGQKGDAGAPGPQGPSGAPGPQGP 808
Score = 35.4 bits (80), Expect = 0.010
Identities = 32/88 (36%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-PGPCGPPPGHG-------PGP 53
PGP G G G GP +G PG G G PG G P G PGP
Sbjct: 518 PGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGP 577
Query: 54 CGPPPHHG----PGPCGPPPGHGPGHPP 77
GP G PGP G GP PP
Sbjct: 578 AGPAGERGEQGAPGPSGFQGLPGPPGPP 605
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/77 (38%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG----PGPCGPP-----PGHGP 51
+ GP G G P G G P GP G G P G G G P PG P
Sbjct: 307 EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF-P 365
Query: 52 GPCGPP-PHHGPGPCGP 67
GP GPP P GP GP
Sbjct: 366 GPRGPPGPQGATGPLGP 382
Score = 34.7 bits (78), Expect = 0.017
Identities = 33/98 (33%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 3 PGPKGHCHCGGHGHP-----PGHCGPPPGHGP----GPCGPPPHHG-PGPCGPP------ 46
PGP G GG G P G GP GP GP G P G PGP G
Sbjct: 287 PGPVGPA--GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 344
Query: 47 -----------PGHGPGPCGPPPHHGPGPCGPPPGHGP 73
PG P P P PGP G GP
Sbjct: 345 GIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGP 382
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 57.8 bits (138), Expect = 2e-09
Identities = 45/106 (42%), Positives = 45/106 (42%), Gaps = 37/106 (34%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP-PGHGPGPCGP---PPHHG-------PGPCGP--PPGH 49
PGP G PPG GPP P PGP GP P H PGP GP PPG
Sbjct: 820 PGPPG---------PPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGP 870
Query: 50 G----PGPCGPPPHHGPGPCGPPPG---------HGPGHP--PPGP 80
PGP GPP PGP GPP GP P PPGP
Sbjct: 871 SIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGP 916
Score = 52.0 bits (123), Expect = 1e-07
Identities = 41/100 (41%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 3 PGPKGHCHCGGHGH------PPGHCGP--PPGHG----PGPCGPPPHHGPGPCGPPPGH- 49
PGP G GH PPG GP PPG PGP GPP PGP GPP
Sbjct: 838 PGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFL 897
Query: 50 ---------GPGPCGPP-PHHGPGPCGPPPGHGPGHPPPG 79
PGP GPP P GP G P GH PG
Sbjct: 898 SNSETFLSGPPGPPGPPGPKGDQGPPG-PRGHQGEQGLPG 936
Score = 48.5 bits (114), Expect = 1e-06
Identities = 41/106 (38%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGPPPHHGP-------GPCGP-----P 46
PGPKG G PG G P GP G G P GP GP GP P
Sbjct: 578 PGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGP 637
Query: 47 PGHG----------PGPCGPPPHHGPGPCGPPPGHGPGHP--PPGP 80
PG G PGP GPP PG GP G P PPGP
Sbjct: 638 PGSGEKGERGAAGEPGPHGPP--GVPGSVGPKGSSGSPGPQGPPGP 681
Score = 40.4 bits (93), Expect = 3e-04
Identities = 38/97 (39%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 4 GPKGHCHCGGHGHPPGHCGPP--PG-HGP-GPCGPPPHHG-PGPCGPPPGHG-------- 50
G +G G PPG G P PG GP GP G P G PG G P G
Sbjct: 755 GEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGS 814
Query: 51 -----PGPCGPPPHHGPGPCGPPPGHGPGHPPPGPHH 82
PGP GPP GP GPP GP P P H
Sbjct: 815 SMLTVPGPPGPPG--AMGPPGPPGAPGPAGPAGLPGH 849
Score = 38.9 bits (89), Expect = 9e-04
Identities = 40/136 (29%), Positives = 41/136 (30%), Gaps = 57/136 (41%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP----------------------GPCGPPPHHG 39
+PGP G G P G G P GP GP GPP G
Sbjct: 651 EPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKG 710
Query: 40 -------------------PGPCGPPPGHGP-GPCGPPPHHG----------PGPCGPP- 68
PG G P G GP GP H G PG GPP
Sbjct: 711 DQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPG 770
Query: 69 PGHGPGHP----PPGP 80
P PG P P GP
Sbjct: 771 PSGDPGKPGLTGPQGP 786
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/76 (35%), Positives = 27/76 (35%), Gaps = 25/76 (32%)
Query: 24 PPGHGPGPCGPPP------------------HHGPGPCGPPPGHGPGPCGPPPHHGPGPC 65
PPG PGP GPP G PPG P P GP
Sbjct: 1400 PPGQ-PGPQGPPGISKVFSAYSNVTADLMDFFQTYGAIQGPPGQKGEMGTPGPKGDRGPA 1458
Query: 66 GPPPGHGPGHP-PPGP 80
GPP GHP PPGP
Sbjct: 1459 GPP-----GHPGPPGP 1469
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 17 PPGHCG----PPPGHGPGPCGPPPHHGPGPCGP 45
PPG G P P GP GPP H PGP GP
Sbjct: 1439 PPGQKGEMGTPGPKGDRGPAGPPGH--PGPPGP 1469
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG 39
PG KG G G GPP GH PGP GP H G
Sbjct: 1440 PGQKGEMGTPGPKGDRGPAGPP-GH-PGPPGPRGHKG 1474
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPP 57
PGP+G G PG G P G G + GP GP PGP GPP
Sbjct: 956 PGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVS-GPPGP-----PGPPGPP 1004
Score = 29.3 bits (64), Expect = 0.71
Identities = 27/87 (31%), Positives = 27/87 (31%), Gaps = 43/87 (49%)
Query: 29 PGPCGPPPHHGP---------------GPCGPPPGHGPGPCGPPPHHG------------ 61
PGP GPP G G GPP GP GPP G
Sbjct: 1148 PGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPP-----GPPGPPGIPGNVWSSISVEDLS 1202
Query: 62 -----------PGPCGPPPGHGPGHPP 77
PGP GPP GP PP
Sbjct: 1203 SYLHTAGLSFIPGPPGPPGPPGPRGPP 1229
Score = 26.6 bits (57), Expect = 4.6
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 37/80 (46%)
Query: 8 HCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP--------------------------- 40
+ H G PG GPP PGP GPP G
Sbjct: 1204 YLHTAGLSFIPGPPGPPGP--PGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRS 1261
Query: 41 ---GPCGPPPGHGPGPCGPP 57
GP GP PGP GPP
Sbjct: 1262 FIVGPPGP-----PGPQGPP 1276
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 57.4 bits (137), Expect = 2e-09
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 15 GHPPGHCGPPPGHGP----GPCGPPPHHGPG-PCGP--PPGHGPGPCGPPPHHGPGPCGP 67
G P GPP HGP GP GPP GPG P GP P + PGP GP PH P P
Sbjct: 448 GGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYA- 506
Query: 68 PPGHGPGHP------PPGP 80
P G G +P PP P
Sbjct: 507 PQGWGNAYPHWQQQAPPDP 525
Score = 39.3 bits (90), Expect = 7e-04
Identities = 26/74 (35%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGP 62
PGP G G G P G P P + PGP GP PH GPP + P G H
Sbjct: 466 PGPHGPPGPPGPGTPMGPYNPAP-YNPGPPGPAPH------GPPAPYAPQGWGNAYPHWQ 518
Query: 63 GPCGPPPGHGPGHP 76
P P P
Sbjct: 519 QQAPPDPAKAGTDP 532
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 57.4 bits (137), Expect = 2e-09
Identities = 38/81 (46%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 10 HCGGHGHPPGHCGPPPGHGPGPCGPPP---HHGP-----GPCGPPPGHGPGPCGP-PPH- 59
H G HG H GPP G P PPP H GP P GPP G G GP PPH
Sbjct: 313 HHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHG 372
Query: 60 -HGPGPCGPPPGH-GPGHPPP 78
GP P PP G+ GP PPP
Sbjct: 373 MRGPPPLMPPHGYTGPPRPPP 393
Score = 54.7 bits (130), Expect = 2e-08
Identities = 45/106 (42%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Query: 1 MDPGPKGH----CHCGGHGHPP-GHCGP---PPGHGPGPCGPP---PHHGPGPCG----P 45
M PG GH G GHP GH P PPG P P HHGP G
Sbjct: 266 MPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAG 325
Query: 46 PPGHG--PGPCGPP--PHHGPGPCGPPP-----GHGPGHPPPGPHH 82
PPG G P P PP PH GP P G PP G GHP P P H
Sbjct: 326 PPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPH 371
Score = 53.9 bits (128), Expect = 3e-08
Identities = 33/70 (47%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPG--PCGPPPGHGPGPCGPPPHHGPGPCGPP----PG 70
PPG PPPG P P PP PG P PPP PG G HGP G P PG
Sbjct: 234 PPGM--PPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAG----HGPPSAGTPGAGHPG 287
Query: 71 HGPGHPPPGP 80
HG HP P P
Sbjct: 288 HGHSHPHPFP 297
Score = 50.8 bits (120), Expect = 2e-07
Identities = 41/104 (39%), Positives = 44/104 (42%), Gaps = 28/104 (26%)
Query: 3 PGPKGHCHCGGHGH--------PPG--HCGPPP--------------GHGPGPCGPPPHH 38
P GH H G G PPG H GPPP GH PGP P
Sbjct: 316 PHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGH-PGPMPPHGMR 374
Query: 39 GPGPCGPPPGHGPGPCGPPPH-HGPGPCGPP-PGHGPGHPPPGP 80
GP P PP G+ GP PPP+ + GP PP P P PP GP
Sbjct: 375 GPPPLMPPHGY-TGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGP 417
Score = 47.4 bits (111), Expect = 3e-06
Identities = 31/66 (46%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 15 GHPPGHCGPPPGHGPGPCGP--PPHHGPGPCGPPP-GHGPGPCGPPPHHGPGPCGPPPGH 71
G P GH GP P HG P PPH GP PPP G+ GP PPP P P P P
Sbjct: 359 GSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPL-PPPRPTPRP--PVPPR 415
Query: 72 GPGHPP 77
GP P
Sbjct: 416 GPLRGP 421
Score = 45.4 bits (106), Expect = 1e-05
Identities = 41/111 (36%), Positives = 41/111 (36%), Gaps = 45/111 (40%)
Query: 15 GHPPGHCGPPPGHGPG-------PCGPPPHHGPGPC--GPP---------PGHG-----P 51
G PP PPP PG P PPP PG GPP PGHG P
Sbjct: 236 GMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295
Query: 52 GPCGPPP----------HHGP--------GPCG----PPPGHGPGHPPPGP 80
P G P HHGP GP G PPP PG P PGP
Sbjct: 296 FPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGP 346
Score = 42.4 bits (98), Expect = 8e-05
Identities = 31/76 (40%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 17 PPGHCGPPP-----GHG-PGPCGPPPHHGPGPCGPPPGHGPG--PCGPPPHHGPGPCG-- 66
PP P P G G P P PPP P P PP PG P PPP PG G
Sbjct: 215 PPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHG 274
Query: 67 PPPGHGPGHPPPGPHH 82
PP PG PG H
Sbjct: 275 PPSAGTPGAGHPGHGH 290
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 57.0 bits (136), Expect = 3e-09
Identities = 39/89 (43%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPP-PHHGPGPCGPPPGHG----PGPCG 55
D G KGH G PPG G P GP G GP P PG G P G PGP G
Sbjct: 1104 DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG 1163
Query: 56 PPPHHG----PGPCGPPPGHGPGHPPPGP 80
PP G GP GPP GP PP P
Sbjct: 1164 PPGPRGRTGDAGPVGPPGPPGPPGPPGPP 1192
Score = 47.8 bits (112), Expect = 2e-06
Identities = 40/98 (40%), Positives = 41/98 (41%), Gaps = 24/98 (24%)
Query: 4 GPKGHCHCGGHGHPPGHCGPP--PGH-----GPGPCGPPPHHG-PGPCGPPPGHGP-GPC 54
GPKG G PG GP PG PGP G + G G GPP GP GP
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPP---GPTGPA 340
Query: 55 GPPPHHG-------PGPCGPPPGHGP----GHP-PPGP 80
GPP G GP GP GP G P PPGP
Sbjct: 341 GPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGP 378
Score = 47.8 bits (112), Expect = 2e-06
Identities = 40/111 (36%), Positives = 40/111 (36%), Gaps = 33/111 (29%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-------GPCGPPPHHGP-------GPCGPPPG 48
PGPKG G G GPP GP G GPP GP GP G P
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642
Query: 49 HG-PGPCGPPPHHG-------PGPCGPP-----------PGHGPGHPPPGP 80
G PGP GPP G PG G P PG PPGP
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 693
Score = 47.0 bits (110), Expect = 3e-06
Identities = 39/105 (37%), Positives = 40/105 (38%), Gaps = 28/105 (26%)
Query: 4 GPKGHCHCGGHGHPPGHCGPP-PGHGPGPCGPPPHHG--------------------PGP 42
GP+G G PG G P P PGP GPP G PGP
Sbjct: 121 GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP 180
Query: 43 CGPPPGHG-PGPCGPPPHHG----PGPCGPPPGHGPGHP--PPGP 80
GP G PGP G P G PG G P GP P PPGP
Sbjct: 181 MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP 225
Score = 46.6 bits (109), Expect = 4e-06
Identities = 34/83 (40%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG 61
PGP G+ G G GPP G PG G GP PPG PGP G G
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP-PGPAGKEGGKG 908
Query: 62 P----GPCGPPPGHGPGHPPPGP 80
P GP G P GP PPGP
Sbjct: 909 PRGETGPAGRPGEVGP-PGPPGP 930
Score = 46.6 bits (109), Expect = 4e-06
Identities = 38/109 (34%), Positives = 40/109 (36%), Gaps = 30/109 (27%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGP-----PPGH-----GPGPCGPPPHHG----------PG 41
+PG +G G PPG GP PPG PG G P G G
Sbjct: 981 EPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETG 1040
Query: 42 PCGPPPGHG----PGPCGPPPHHG----PGPCGPPPGHGP--GHPPPGP 80
P GPP G PGP GP G GP GP GP P GP
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP 1089
Score = 45.8 bits (107), Expect = 7e-06
Identities = 37/96 (38%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-PGPCG----PPPGHGPGPCG 55
D GP G G P G+ G P G G GPP G PG G P P GP G
Sbjct: 837 DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG 896
Query: 56 PPPHHGPGPCGPPPGHGP-------GHP----PPGP 80
P PGP G G GP G P PPGP
Sbjct: 897 P-----PGPAGKEGGKGPRGETGPAGRPGEVGPPGP 927
Score = 45.1 bits (105), Expect = 1e-05
Identities = 36/87 (41%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGP--PPGHGPGPCGPPPHHGP----GPCGPPPGHGPGPCGP 56
PG G G PPG G PPG PGP G GP GP G P G GP
Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGP-PGPAGKEGGKGPRGETGPAGRP-----GEVGP 924
Query: 57 PPHHGP-GPCGPPPGHGPGHPP--PGP 80
P GP G G P GP P PGP
Sbjct: 925 PGPPGPAGEKGSPGADGPAGAPGTPGP 951
Score = 44.7 bits (104), Expect = 2e-05
Identities = 36/103 (34%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 3 PGPKGHCHCGGHGHP----------------PGHCGPPPGHG-PGPCGPPPHHG----PG 41
PGP G GG+ P PG GP G PGP G P G PG
Sbjct: 147 PGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG 206
Query: 42 PCGPPPGHGP----GPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
G P GP GP GPP +G PG PPGP
Sbjct: 207 EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249
Score = 44.3 bits (103), Expect = 2e-05
Identities = 37/90 (41%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHGP-GPCGP------PPGHGP-GP 53
PGP G G PG G P G G GPP GP GP GP P G G
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGS 867
Query: 54 CGPPPHHG-PGPCG--PPPGHGPGHPPPGP 80
GPP G PG G PPG PPGP
Sbjct: 868 AGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897
Score = 43.9 bits (102), Expect = 3e-05
Identities = 37/89 (41%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP----GPCGPPPGHG-PGPCGPP 57
PGP G G G GPP GP GPP GP G G P G PG G P
Sbjct: 976 PGPSGEPGKQGPSGASGERGPP-----GPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Query: 58 PHHG----PGPCGPPPGHG-PGHP-PPGP 80
G GP GPP G PG P P GP
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGPVGP 1059
Score = 43.5 bits (101), Expect = 4e-05
Identities = 34/90 (37%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG--PGPCGPPPHHGPGPCGPPPGHG-PGPCGPPPH 59
PGP G G PG G P G P P P GP GP G PGP GPP
Sbjct: 514 PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 573
Query: 60 HG-------PGPCG--PPPGHGPGHPPPGP 80
G PGP G PG PGP
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603
Score = 42.7 bits (99), Expect = 6e-05
Identities = 34/91 (37%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG-------PGPCGPP--PGH 49
PG KG G P G GPP G PGP GPP G PGP G PG
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594
Query: 50 GPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
P P GP G G PPGP
Sbjct: 595 AGERGVPGPPGAVGPAG-KDGEAGAQGPPGP 624
Score = 42.4 bits (98), Expect = 8e-05
Identities = 40/115 (34%), Positives = 42/115 (36%), Gaps = 38/115 (33%)
Query: 3 PGP---KGHCHCGGHGHPPGHCGP--PPGHG--------PGPCGPPPHHGP----GPCGP 45
PGP +G+ G PPG GP PPG GP GP GP G GP
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP 375
Query: 46 P-PGHGPGPCGPPPHHG-------------------PGPCGPPPGHGPGHPPPGP 80
P P GP G P G PG GP GPG PPGP
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG-GPPGP 429
Score = 42.0 bits (97), Expect = 1e-04
Identities = 37/99 (37%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPH 59
+PGP G G PG G P G GP GP G PGP GP PG G P
Sbjct: 474 EPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS--PGEAGRPGE 531
Query: 60 HG-------------PGPCG----PPPGHGPGHP-PPGP 80
G PGP G P P G P PPGP
Sbjct: 532 AGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP 570
Score = 42.0 bits (97), Expect = 1e-04
Identities = 39/118 (33%), Positives = 39/118 (33%), Gaps = 44/118 (37%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG----------PGPCGPPPHHG----PGPCGPPPG 48
PGPKG G P G G P G PGP G P G GP GP
Sbjct: 739 PGPKGD---RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795
Query: 49 HG-------PGPCGPPPHHGP-------------------GPCGPPPGHGPGHPPPGP 80
G PGP GP GP G GPP GP PPGP
Sbjct: 796 RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA-GPPGP 852
Score = 41.6 bits (96), Expect = 1e-04
Identities = 34/86 (39%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------PGPCGPPPGHGP--- 51
PG G G+ G GPP GP GP GPP G GP GP GP
Sbjct: 313 PGAPGPAGARGNDGATGAAGPP---GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 52 -GPCGPP-PHHGPGPCGPPPGHG-PG 74
G GPP P GP G P G PG
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPG 395
Score = 40.4 bits (93), Expect = 3e-04
Identities = 43/138 (31%), Positives = 43/138 (31%), Gaps = 60/138 (43%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-------------GPCGPPPHHGP----GPCGP 45
PG KG G PPG G P GP GP GP GP GP GP
Sbjct: 1030 PGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP 1089
Query: 46 PPGHG-------------------------PGPCGPPPHHGP----GPCGP--PPGH--G 72
G PGP G P GP GP GP PPG
Sbjct: 1090 QGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA 1149
Query: 73 PGHP----------PPGP 80
PG PPGP
Sbjct: 1150 PGKDGLNGLPGPIGPPGP 1167
Score = 38.9 bits (89), Expect = 9e-04
Identities = 32/81 (39%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 3 PGPKGHCHCGGHGHPPGHCGP-----PPGH-----GPGPCGPPPHHGPGPCGPPPGHG-P 51
PGP G G PPG GP PPG GP GP GP GPP +G
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-----GPPGPPGKNGDD 232
Query: 52 GPCGPPPHHGPGPCGPPPGHG 72
G G P PG GPP G
Sbjct: 233 GEAGKPGR--PGERGPPGPQG 251
Score = 38.9 bits (89), Expect = 9e-04
Identities = 31/93 (33%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-------------PGPCGPPPHHGPGPCGPP-P 47
+PGP G G PG G P G PG GP GPG GPP P
Sbjct: 372 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG--GPPGP 429
Query: 48 GHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
G G P G PG PPGP
Sbjct: 430 KGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Score = 38.9 bits (89), Expect = 9e-04
Identities = 38/95 (40%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGPPPHHG-------PGPCG--PPPGH 49
PGPKG+ G G G GP GP GP G PGP G PPG
Sbjct: 427 PGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGE 486
Query: 50 --GPGPCGPPPHHG-PGPCGPPPGHG-PGHPPPGP 80
GPG G P G GP GP G PG P GP
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPG--PAGP 519
Score = 37.0 bits (84), Expect = 0.003
Identities = 32/84 (38%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 10 HCGGHGHPPGHCGPPPGHGP------------GPCGPPPHHGP-GPCGPPPGHG-PGPCG 55
+C G P G C P G GP G GP GP GPP G PG G
Sbjct: 80 NCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPG 139
Query: 56 PPPHHGPGPCGP--PPGHGPGHPP 77
P PGP GP PPG G P
Sbjct: 140 LPGP--PGPPGPPGPPGLGGNFAP 161
Score = 35.8 bits (81), Expect = 0.008
Identities = 31/83 (37%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 4 GPKGHCHCGGHGHPPGHCGPP-PGHGPGPCGPPPHHG----PGPCGPPPGHGP-GPCGPP 57
GP+G G PPG G P PG G P G PG G P G GP GP
Sbjct: 365 GPQG---VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ 421
Query: 58 PHHGPGPCGPPPGHGPGHPPPGP 80
GP GPP G P P
Sbjct: 422 -----GPGGPPGPKGNSGEPGAP 439
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/101 (29%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHG----------------PGPCGPPPHHG-------P 40
GP G G PG G P G PGP GP +G
Sbjct: 650 GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAK 709
Query: 41 GPCGPPPGHG----PGPCGPPPHHG----PGPCGPPPGHGP 73
G G P G PG G P G PGP G GP
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 750
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 57.0 bits (136), Expect = 3e-09
Identities = 40/83 (48%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGP---CGPPPHHGPGPCGPPPGHG-PGPCGPP 57
PGPKG+ G PPG G P G PGP GPP GP G P G PG GPP
Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGP--LGKPGLPGMPGADGPP 762
Query: 58 PHHGPGPCGPPPGHGPGHPPPGP 80
H PG GPP G G PPGP
Sbjct: 763 GH--PGKEGPP-GEKGGQGPPGP 782
Score = 55.5 bits (132), Expect = 9e-09
Identities = 41/96 (42%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGPPPHHG-PGPCGPPPGHGP-GPCGP 56
PGPKG G P G GPP GP GP G P G PG GPP GP G GP
Sbjct: 1302 PGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGP 1361
Query: 57 PPHHG----------PGPCGPPPGHGP--GHPPPGP 80
P G PGP G P GP PPGP
Sbjct: 1362 PGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGP 1397
Score = 54.7 bits (130), Expect = 2e-08
Identities = 43/99 (43%), Positives = 44/99 (44%), Gaps = 27/99 (27%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP-GPCGPP-----PGHGPGPCGP 56
PGPKG+ G PPG GP GP GP GP GP GPP PGH PG G
Sbjct: 930 PGPKGNSGGDGPAGPPGERGP-----NGPQGPTGFPGPKGPPGPPGKDGLPGH-PGQRGE 983
Query: 57 PPHHG-PGPCGPPPGHGP-------------GHP-PPGP 80
G GP GPP GP GHP PPGP
Sbjct: 984 TGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGP 1022
Score = 52.0 bits (123), Expect = 1e-07
Identities = 40/100 (40%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 2 DPGPKGHCHCGGHGHPPGHCG----------PPPGHGPGPCGPPPHHG-PGPCGPPPGHG 50
DPGP G G PPG G P P PGP GPP G PGP GP G
Sbjct: 1346 DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405
Query: 51 -------PGPCGPPPHHGP-GPCGPPPGHGPG--HPPPGP 80
G GPP GP GP G P GP PGP
Sbjct: 1406 EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGP 1445
Score = 48.9 bits (115), Expect = 9e-07
Identities = 38/85 (44%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPH 59
DPGP G G PPG G P G PGP G G GP GPP GP G P
Sbjct: 1040 DPGPAG---LPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPP-----GPAGSPGE 1091
Query: 60 HGP----GPCGPPPGHGPGHPPPGP 80
GP GP G P GP PPGP
Sbjct: 1092 RGPAGAAGPIGIPGRPGP-QGPPGP 1115
Score = 48.5 bits (114), Expect = 1e-06
Identities = 37/85 (43%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPP--PGHGPGPCGPPPHHGP-GPCGPPPGHG-PGPCGPP- 57
PG G+ G PG G P PG G GP GP G G GP G PGP GPP
Sbjct: 1272 PGGIGNPGAVGEKGEPGEAGEPGLPGEG-GPPGPKGERGEKGESGPSGAAGPPGPKGPPG 1330
Query: 58 ---PHHGPGPCGPPPGHG-PGHPPP 78
P PGP G P G PG P P
Sbjct: 1331 DDGPKGSPGPVGFPGDPGPPGEPGP 1355
Score = 47.4 bits (111), Expect = 3e-06
Identities = 34/81 (41%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-PGPCGP--PPGHGPGPCGPPP 58
PGP G G P G+ GP GP G G P G PGP G PPG GP G P
Sbjct: 693 PGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGE-KGPLGKPG 751
Query: 59 HHGPGPCGPPPGHGPGHPPPG 79
G PPGH PPG
Sbjct: 752 LPGMPGADGPPGHPGKEGPPG 772
Score = 46.2 bits (108), Expect = 6e-06
Identities = 36/91 (39%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 4 GPKGHCHC----GGHGHPPGHCGPPPGHGP----GPCGPPPHHGPGPCGPPPGH-----G 50
GPKG G +G G G P GP GP GP GP PG G
Sbjct: 880 GPKGSIGFPGFPGANGEKGGR-GTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGG 938
Query: 51 PGPCGPPPHHGP-GPCGPPPGHGPGHPPPGP 80
GP GPP GP GP GP GP PP P
Sbjct: 939 DGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969
Score = 45.8 bits (107), Expect = 7e-06
Identities = 39/90 (43%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 3 PGPKGHCHCGGHGHPPGHCGP--------PPGHGPGPCGPPPHHG-PGPCGPPPGHG-PG 52
PGP G G PPG G PPG PGP GP G GP GPP G G PG
Sbjct: 1221 PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP-PGPRGPSGAPGADGPQGPPGGIGNPG 1279
Query: 53 PCGPPPHHGPGPCGPP--PGHGPGHPPPGP 80
G PG G P PG G PPGP
Sbjct: 1280 AVGEKGE--PGEAGEPGLPGEG---GPPGP 1304
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/112 (34%), Positives = 40/112 (35%), Gaps = 34/112 (30%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPP-PGHGPGPCGPP-------------------PHHGPG 41
+PG KG G PPG GP P PGP G P PG
Sbjct: 1163 EPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPG 1222
Query: 42 PCGP--------PPGH-----GPGPCGPPPHHGP-GPCGPPPGHGPGHPPPG 79
P GP PPG G GPP GP GP G P GP PP G
Sbjct: 1223 PPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGG 1274
Score = 45.4 bits (106), Expect = 1e-05
Identities = 32/73 (43%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG-PGPCGPPPGHG-PGPCGP 56
PG +G G P G GP G GP GPP G PGP GP G GP GP
Sbjct: 1494 PGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGP 1553
Query: 57 PPHHG-PGPCGPP 68
G PGP GPP
Sbjct: 1554 KGEAGHPGPPGPP 1566
Score = 44.3 bits (103), Expect = 2e-05
Identities = 38/88 (43%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGPPPHHGP----GPCGPPPGHGPGPC 54
PG KGH G PPG G G GP G P GP GP GPP GP
Sbjct: 639 PGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPP-----GPP 693
Query: 55 GPPPHHG-PGPCGPPPGHGP-GHP-PPG 79
GPP G G GP GP G P PPG
Sbjct: 694 GPPGVTGMDGQPGPKGNVGPQGEPGPPG 721
Score = 44.3 bits (103), Expect = 2e-05
Identities = 32/75 (42%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-PGPCGPPPGHG-PGPCGPPPH 59
PG +G G PPG G GP G GP G PGP GPP G PG G
Sbjct: 978 PGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGT 1037
Query: 60 HG-PGPCGPPPGHGP 73
G PGP G P GP
Sbjct: 1038 KGDPGPAGLPGKDGP 1052
Score = 44.3 bits (103), Expect = 2e-05
Identities = 36/96 (37%), Positives = 37/96 (38%), Gaps = 29/96 (30%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGP----GPCGPPPGHGP-GPCGP- 56
PGP G G+ PPG PGP G P GP GP G P GP GP GP
Sbjct: 1065 PGPVGALGLKGNEGPPGP--------PGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPA 1116
Query: 57 -----PPHHGP----------GPCGPPPGHGPGHPP 77
P GP GP G P GP PP
Sbjct: 1117 GEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPP 1152
Score = 43.9 bits (102), Expect = 3e-05
Identities = 47/157 (29%), Positives = 50/157 (31%), Gaps = 78/157 (49%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPP-----------PGH----GP----------------- 29
+ GP+G GG PG GPP PG+ GP
Sbjct: 839 EDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKG 898
Query: 30 --------------GPCGPPPHHGP----------------GPCGPPPGHGP-GPCGPPP 58
GP GP GP GP GPP GP GP GP
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 59 HHGP-GPCGPPPGHG-PGHP-------------PPGP 80
GP GP GPP G PGHP PPGP
Sbjct: 959 FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 995
Score = 40.0 bits (92), Expect = 4e-04
Identities = 32/69 (46%), Positives = 32/69 (46%), Gaps = 16/69 (23%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-PGPCGP--PPGHGPGPCGPPPH 59
GPKG G P G GPP G PGP GP G GP GP GH PGP
Sbjct: 1513 GPKGEQGITG---PSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGH-PGP------ 1562
Query: 60 HGPGPCGPP 68
PGP GPP
Sbjct: 1563 --PGPPGPP 1569
Score = 38.5 bits (88), Expect = 0.001
Identities = 39/128 (30%), Positives = 39/128 (30%), Gaps = 55/128 (42%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG----------PGPCGPPPG 48
PGP G GG PG GP G PGP G P G PG GP
Sbjct: 570 PGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGD 629
Query: 49 HG----------------PGPCGPPPHHGPGPCGPPPGHG----------PGHP------ 76
G PGP GP PGP G G PG P
Sbjct: 630 RGFDGLAGLPGEKGHRGDPGPSGP-----PGPPGDDGERGDDGEVGPRGLPGEPGPRGLL 684
Query: 77 ----PPGP 80
PPGP
Sbjct: 685 GPKGPPGP 692
Score = 37.0 bits (84), Expect = 0.003
Identities = 38/111 (34%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP----GPCGPPPHHGP-GPCGPPPGHG----PGP 53
PGP G G G G P G G GPP GP GP G P G PGP
Sbjct: 1143 PGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGP 1202
Query: 54 CGPP----------PHHGPGPCGPPPGHG-PGHP-------------PPGP 80
G P PGP GP G PG P PPGP
Sbjct: 1203 RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP 1253
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/75 (40%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHG- 61
PG KG G G GPP GP G GP G P G PGP GPP G
Sbjct: 816 PGFKGDMGIKGDR---GEIGPP-----GPRGEDGPEGPKGRGGPNGD-PGPLGPPGEKGK 866
Query: 62 ---PGPCGPPPGHGP 73
PG G P GP
Sbjct: 867 LGVPGLPGYPGRQGP 881
Score = 32.7 bits (73), Expect = 0.064
Identities = 40/123 (32%), Positives = 40/123 (32%), Gaps = 45/123 (36%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP--------GPCGPPPGHGP-- 51
PGP G G PG GPP G PG G P G G G GP
Sbjct: 480 PGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMV 539
Query: 52 -------------------GPCGPPPHHG-PGPCGPP--------PGH-GPGHP-----P 77
GP GP G PGP GPP PG GP P P
Sbjct: 540 SAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGP 599
Query: 78 PGP 80
PGP
Sbjct: 600 PGP 602
Score = 32.0 bits (71), Expect = 0.11
Identities = 32/73 (43%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 4 GPKGHCHCGGHGHP----PGHC--GPPPGHGP-GPCGPPPHHGP-GPCGPPPGHG-PGPC 54
GP+G G G P PG GPP GP G GPP GP G G P G PG
Sbjct: 447 GPRGEK--GQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRP 504
Query: 55 GPPPHHG-PGPCG 66
G P G PGP G
Sbjct: 505 GLPGADGLPGPPG 517
Score = 30.4 bits (67), Expect = 0.32
Identities = 40/138 (28%), Positives = 42/138 (30%), Gaps = 66/138 (47%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGP---PPGHG----- 50
PG KG G PG GPP GH PG GPP G PGP GP P G
Sbjct: 741 PGEKGPLGKPGLPGMPGADGPP-GH-PGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGAD 798
Query: 51 -----------------------------------PGPCGPP----------PHHGPGPC 65
PGP G P+ PGP
Sbjct: 799 GIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPL 858
Query: 66 GPPPGHG-------PGHP 76
GPP G PG+P
Sbjct: 859 GPPGEKGKLGVPGLPGYP 876
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 57.0 bits (136), Expect = 3e-09
Identities = 43/91 (47%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 3 PGPKGHCHCGGHGHPPGHC-GPPPGHGPGPCGPPPHHGPG-PCGPPPGHG--------PG 52
P P+G G PPG GPPP G P GPPP PG P GPPP PG
Sbjct: 39 PSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPP---PGKPQGPPPQGDKSRSPRSPPG 95
Query: 53 -PCGPPPHHGPGPCGPPPGHG---PGHPPPG 79
P GPPP G P GPPP G G PPPG
Sbjct: 96 KPQGPPPQGGK-PQGPPPQGGNKPQGPPPPG 125
Score = 52.0 bits (123), Expect = 1e-07
Identities = 33/87 (37%), Positives = 33/87 (37%), Gaps = 24/87 (27%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPG-------------------PCGPP 57
PPG PP G P GPPP G P GPPP P P GPP
Sbjct: 93 PPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP 152
Query: 58 PHHGPGPCGPPPGHG-----PGHPPPG 79
G P GPPP G P PP G
Sbjct: 153 QQEGNNPQGPPPPAGGNPQQPQAPPAG 179
Score = 51.6 bits (122), Expect = 1e-07
Identities = 32/68 (47%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 22 GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP---HHGPGPCG-------PPPGH 71
GP P G P GPPP G P GPPP G P GPPP GP P G PPG
Sbjct: 38 GPSPQGGNKPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 96
Query: 72 GPGHPPPG 79
G PP G
Sbjct: 97 PQGPPPQG 104
Score = 50.1 bits (118), Expect = 4e-07
Identities = 27/50 (54%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 31 PCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPP-GHGPGHPPPG 79
P GP P G P GPPP G P GPPP G P GPPP G G PP G
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQG 84
Score = 48.5 bits (114), Expect = 1e-06
Identities = 30/75 (40%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 17 PPGHCGPPPGHG----------PG-PCGPPPHHGPGPCGPPP---GHGPGPCGPPPHHGP 62
PPG PP G PG P GPP G P GPPP G+ P PP
Sbjct: 123 PPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 182
Query: 63 GPCGPPPGHGPGHPP 77
GP PP G P PP
Sbjct: 183 GPPRPPQGGRPSRPP 197
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 56.6 bits (135), Expect = 4e-09
Identities = 35/73 (47%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 15 GHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGP-----PP 69
G PP PPP PGP GP P GPGP GP G PG GP P GPG P PP
Sbjct: 182 GGPP----PPPAAVPGP-GPGPKQGPGPGGPKGGKMPG--GPKPGGGPGLSTPGGHPKPP 234
Query: 70 GHGPGHPPPGPHH 82
G G P G H
Sbjct: 235 HRGGGEPRGGRQH 247
Score = 54.3 bits (129), Expect = 2e-08
Identities = 31/59 (52%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGPH 81
PP GP P PP PGP GP P GPGP GP PG GP PG GPG PG H
Sbjct: 178 PPQAGGPPP---PPAAVPGP-GPGPKQGPGPGGPKGGKMPG--GPKPGGGPGLSTPGGH 230
Score = 52.4 bits (124), Expect = 8e-08
Identities = 37/83 (44%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 12 GGHGHPPGHC---GPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGP-----PPHHGPG 63
GG PP GP P GPGP GP PG GP PG GPG P PPH G G
Sbjct: 182 GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG--GPKPGGGPGLSTPGGHPKPPHRGGG 239
Query: 64 -PCGPPPGHGPGH------PPPG 79
P G H P H PPPG
Sbjct: 240 EPRGGRQHHPPYHQQHHQGPPPG 262
Score = 49.7 bits (117), Expect = 5e-07
Identities = 34/77 (44%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 12 GGHGHPPGHCGPPPGHG----PGPCGPPPHHGPGPCGPPPGHGPGPCGPPPH---HGPGP 64
GG G PPPG G GP GP GPG GP P P PPPH P P
Sbjct: 23 GGRGGLHDFRSPPPGMGLNQNRGPMGP----GPGQSGPKPPIPP----PPPHQQQQQPPP 74
Query: 65 CGPPPGHGPGHPPPGPH 81
PPP P H PP PH
Sbjct: 75 QQPPPQQPPPHQPP-PH 90
Score = 48.5 bits (114), Expect = 1e-06
Identities = 33/84 (39%), Positives = 33/84 (39%), Gaps = 22/84 (26%)
Query: 18 PGHCGPPPGHGPGPCG-PPPHHGPGPCGPPPGHGP-----------GPCGPPPH------ 59
P G PPG GPGP PPP P G PP P G PPP
Sbjct: 136 PPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG 195
Query: 60 ----HGPGPCGPPPGHGPGHPPPG 79
GPGP GP G PG P PG
Sbjct: 196 PGPKQGPGPGGPKGGKMPGGPKPG 219
Score = 45.8 bits (107), Expect = 7e-06
Identities = 36/80 (45%), Positives = 37/80 (46%), Gaps = 18/80 (22%)
Query: 3 PGPKGHCHCGGH--GHPPGHCGPPPGHGPGPCGP-----PPHHGPG-PCGPPPGHGPGPC 54
PGPK GG G PG GP PG GPG P PPH G G P G H
Sbjct: 196 PGPKQGPGPGGPKGGKMPG--GPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHH----- 248
Query: 55 GPPPHHGPGPCGPPPGHGPG 74
PP+H GPPPG GPG
Sbjct: 249 --PPYHQQHHQGPPPG-GPG 265
Score = 45.4 bits (106), Expect = 1e-05
Identities = 26/65 (40%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 13 GHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG 72
G G PG PP P PP G PPG GPGP PP P PPG
Sbjct: 114 GPGPAPGVGSAPPASSSAPPATPP-----TSGAPPGSGPGPTPTPP---PAVTSAPPGAP 165
Query: 73 PGHPP 77
P PP
Sbjct: 166 PPTPP 170
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/55 (43%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 24 PPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPP 78
P G GPG GP P P PPP H PP P P PPP P HP P
Sbjct: 46 PMGPGPGQSGPKP-----PIPPPPPHQQQQ--QPPPQQPPPQQPPPHQPPPHPQP 93
Score = 42.4 bits (98), Expect = 8e-05
Identities = 32/94 (34%), Positives = 32/94 (34%), Gaps = 38/94 (40%)
Query: 24 PPGHGPGPCGPPPHHGP--------------------GPCGPPPGHGPGP---------- 53
PP P P PPPH P GP GP PG G P
Sbjct: 77 PPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGP-GPAPGVGSAPPASSSAPPAT 135
Query: 54 ---CGPPPHHGPGPCGPPP----GHGPGHPPPGP 80
G PP GPGP PP PG PPP P
Sbjct: 136 PPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTP 169
Score = 41.6 bits (96), Expect = 1e-04
Identities = 34/91 (37%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG---PGPCGPPPGHGPGPCGPPPH 59
PG + + G G PG GP P P PPPH P P PPP P P PPPH
Sbjct: 36 PGMGLNQNRGPMGPGPGQSGPKPPIPP----PPPHQQQQQPPPQQPPPQQPP-PHQPPPH 90
Query: 60 HGPGPCGPPP-----------GHGPGHPPPG 79
P PP GPG P PG
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPG-PAPG 120
Score = 41.2 bits (95), Expect = 2e-04
Identities = 30/83 (36%), Positives = 30/83 (36%), Gaps = 20/83 (24%)
Query: 17 PPGHCGP--PPGHGPGPCGPPPHHGPGPCGPP-----------PGHGPGPCGPPPHHGPG 63
PP P PP H P P P PH P PP PG PG PP
Sbjct: 73 PPQQPPPQQPPPHQPPP-HPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131
Query: 64 P------CGPPPGHGPGHPPPGP 80
P G PPG GPG P P
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPP 154
Score = 27.7 bits (60), Expect = 2.1
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 23/77 (29%)
Query: 12 GGHGHPPGHCGPPPGHGPGPCGPPP--------------HHGPGPCGPPPGHGPGPCGPP 57
GG PP G G+ P PP G G GP G GP GP
Sbjct: 627 GGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGSDMRTERFGQGGAGPVGGQGPRGMGP- 685
Query: 58 PHHGPGPCGPPPGHGPG 74
G P G+G G
Sbjct: 686 --------GTPAGYGRG 694
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 56.2 bits (134), Expect = 5e-09
Identities = 36/72 (50%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 16 HPPGHCGPPPGHG-----PGPCGPPPHHGPG---PCGPPPGHGPGPCGPPPHHGPGPCGP 67
+PPG GPPP G PG GPPP P P G PPG G P G PP PG P
Sbjct: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT-PMGMPP---PGMRPP 223
Query: 68 PPGHGPGHPPPG 79
PPG G PPPG
Sbjct: 224 PPGM-RGPPPPG 234
Score = 52.8 bits (125), Expect = 6e-08
Identities = 37/88 (42%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 1 MDPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-----PGPCGPPPGHGPGPCG 55
M P +G G P + PG GPPP G PG GPPPG P P G
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP-PMG 200
Query: 56 PPPHHGPG---PCG-PPPGHGPGHPPPG 79
PP PG P G PPPG P PPPG
Sbjct: 201 PPMGIPPGRGTPMGMPPPGMRP--PPPG 226
Score = 52.8 bits (125), Expect = 6e-08
Identities = 33/64 (51%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHP 76
PPG GPPPG P P GPP PG G P G P PPP PG GPPP PG
Sbjct: 185 PPGMMGPPPGMRP-PMGPPMGIPPGR-GTPMGMPPPGMRPPP---PGMRGPPP---PGMR 236
Query: 77 PPGP 80
PP P
Sbjct: 237 PPRP 240
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/89 (34%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 4 GPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGP---PPGHGP--------- 51
G G G G P G P P G GP G GP P G G
Sbjct: 102 GGPGIGRAAGRGIPAGV--PMPQAPAGLAGPVRGVG-GPSQQVMTPQGRGTVAAAAAAAT 158
Query: 52 -GPCGPPPHHGPGPCGPPPGHGPGHPPPG 79
G P + PG GPPP G G PPPG
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPG 187
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 56.2 bits (134), Expect = 5e-09
Identities = 50/129 (38%), Positives = 51/129 (39%), Gaps = 52/129 (40%)
Query: 3 PGPKGHCHCGGH----------GHP--PGHCGP--PPGHG-------------PGPCGPP 35
PGPKG G G P PG GP PPG+G PG GPP
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPP 639
Query: 36 PHHG-----------PGPCGP--PPGHGPGPCGPPPHHG----------PGPCGPPPGHG 72
G PGP GP PPGH PGP GPP G PGP G P G
Sbjct: 640 GEAGPRGELSVSTPVPGPPGPPGPPGH-PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 73 PGHP-PPGP 80
G P PPGP
Sbjct: 699 IGFPGPPGP 707
Score = 50.8 bits (120), Expect = 2e-07
Identities = 42/118 (35%), Positives = 42/118 (35%), Gaps = 40/118 (33%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-------------------PGP 42
PGPKG G PPG G P G PGP G P G PGP
Sbjct: 1276 PGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Query: 43 CGP--PPG--------------HGPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GP PPG PGP G P G PGP GPP GP P P
Sbjct: 1336 IGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP 1393
Score = 46.6 bits (109), Expect = 4e-06
Identities = 33/81 (40%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHGPGPCGPP 57
D GP+G G PPG G G GPP G PGP GPP H G G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 58 PHHG-PGPCGPPPGHGPGHPP 77
G PGP GPP G PP
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPP 1291
Score = 45.1 bits (105), Expect = 1e-05
Identities = 38/99 (38%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------------PGPCGPPP 47
DPG +G G PG G GP GP GPP G PGP G P
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPG 1367
Query: 48 GHG----PGPCGPPPHHGPGPCGP--PPGHGPGHPPPGP 80
G PGP GPP + GPCGP PG PGP
Sbjct: 1368 EPGMQGEPGPPGPPGN--LGPCGPRGKPGKDGKPGTPGP 1404
Score = 44.7 bits (104), Expect = 2e-05
Identities = 38/104 (36%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 4 GPKGHCHCGGHGHPPGHCGP--PPG--------------HGPGPCGPPPHHG----PGPC 43
G KG+ G PPG GP PPG PGP G P G PGP
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPP 1378
Query: 44 GPPPGHGP-GPCGPPPHHG----PGPCGPPPGHGPGHPPPGPHH 82
GPP GP GP G P G PGP G G P H
Sbjct: 1379 GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPESLFH 1422
Score = 42.7 bits (99), Expect = 6e-05
Identities = 39/107 (36%), Positives = 39/107 (36%), Gaps = 31/107 (28%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-------PGPCGPPPHHG-------------PG 41
D G KG G PPGH GP G PG G P HG PG
Sbjct: 1078 DMGKKGEM---GQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 42 PCGPP--PGH--GPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GPP PG PGP G G PGP G G PPGP
Sbjct: 1135 IRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 40.4 bits (93), Expect = 3e-04
Identities = 35/91 (38%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPP-------PGHGP 51
PGP+G G PPG G P PG G P G G G P PG P
Sbjct: 362 PGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG-SP 420
Query: 52 GPCGPPPHHG-PGPCGPPPGHGPGHPPPGPH 81
G G P G PGP GPP PPG H
Sbjct: 421 GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDH 451
Score = 40.4 bits (93), Expect = 3e-04
Identities = 36/91 (39%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 12 GGHGHP--PGHCGPPPGH------------GPGPCGPPPHHG----PGPCGPPPGHG-PG 52
G G P PG GPP H PGP GPP G PG G P G PG
Sbjct: 1245 GSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPG 1304
Query: 53 PCGPPPHHG-PGPCGPP--PGHGPGHPPPGP 80
P G P G PG G PG PPGP
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Score = 39.7 bits (91), Expect = 5e-04
Identities = 39/96 (40%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHH------GPGPCGPP--PGH---- 49
PG KG G G G P HG G G P + PGP G P PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKK 1082
Query: 50 -GPGPCGPPPHHGP-GPCGPPPGHG-PGHP-PPGPH 81
G GPP H GP GP G P G PG P PGPH
Sbjct: 1083 GEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH 1118
Score = 37.0 bits (84), Expect = 0.003
Identities = 36/96 (37%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-------------PGPCGPPPG 48
DPG KG G P G G P PG G P G PGP G
Sbjct: 533 DPGLKGEK--GETLQPEGQVGVPGD--PGLRGQPGRKGLDGIPGTPGVKGLPGPKGELAL 588
Query: 49 HGP----GPCGPPPHHG-PGPCGP--PPGHGPGHPP 77
G GP G P G PGP GP PPG+GP P
Sbjct: 589 SGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEP 624
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGP--PPGH-GPGPCGPP 57
DPG G G PPG GP GP GPP G PG GP P GH G G
Sbjct: 172 DPGLPGAPGPQGLPGPPGFPGP-----VGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHK 226
Query: 58 PHHG----PGPCGPP 68
G GP GPP
Sbjct: 227 GERGVKGLTGPPGPP 241
Score = 34.7 bits (78), Expect = 0.017
Identities = 35/80 (43%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG KG G G P PG PG G P G PGP G PPG GPP HG
Sbjct: 397 PGLKGSK--GERGRPGKDAMGTPG-SPGCAGSPGLPGSPGPPG-PPGDIVFRKGPPGDHG 452
Query: 62 -PGPCGPP--PG-HGPGHPP 77
PG G P PG GP P
Sbjct: 453 LPGYLGSPGIPGVDGPKGEP 472
Score = 33.5 bits (75), Expect = 0.037
Identities = 33/83 (39%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG G C G P G G P PGP GP G PG G PG G P G
Sbjct: 676 PGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSL--GCPGKMGEPGLPG 733
Query: 62 ----PGPCGPP----PGHGPGHP 76
PG G P PG GPG P
Sbjct: 734 KPGLPGAKGEPAVAMPG-GPGTP 755
Score = 32.0 bits (71), Expect = 0.11
Identities = 38/134 (28%), Positives = 39/134 (29%), Gaps = 60/134 (44%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP------------------------------GPC 32
PG G+ G PG GPP GP GP
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPK 838
Query: 33 GPPPHHG------PGPCGPP--PGH--------------GPGPCGPPPHHG-------PG 63
G P G PG G P PGH PG GPP G PG
Sbjct: 839 GDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPG 898
Query: 64 PCGPP-PGHGPGHP 76
GPP P PG P
Sbjct: 899 AIGPPGPPGNPGTP 912
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG----PGPCGPPPGHG 50
PGP G G PG GPP GP GP G P G PGP G G
Sbjct: 1360 PGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKG 1412
Score = 29.3 bits (64), Expect = 0.71
Identities = 30/98 (30%), Positives = 30/98 (30%), Gaps = 21/98 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG------------ 50
PGP G G PG G G P P PG G G
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 51 ----PGPCGPPPHHG-PGPCGPP----PGHGPGHPPPG 79
GP GP G PGP G P PG PPG
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPG 1245
Score = 28.5 bits (62), Expect = 1.2
Identities = 39/114 (34%), Positives = 41/114 (35%), Gaps = 35/114 (30%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG----------PGPCGPPP 47
+PG KG G G G P G PGP GPP G PG G P
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 48 GHG----PGPCGPPPHHG-PGPCGPP--PG-HG-------PGHP------PPGP 80
G PG G G PG G P PG HG PG+ PPGP
Sbjct: 1016 SMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 56.2 bits (134), Expect = 5e-09
Identities = 50/129 (38%), Positives = 51/129 (39%), Gaps = 52/129 (40%)
Query: 3 PGPKGHCHCGGH----------GHP--PGHCGP--PPGHG-------------PGPCGPP 35
PGPKG G G P PG GP PPG+G PG GPP
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPP 639
Query: 36 PHHG-----------PGPCGP--PPGHGPGPCGPPPHHG----------PGPCGPPPGHG 72
G PGP GP PPGH PGP GPP G PGP G P G
Sbjct: 640 GEAGPRGELSVSTPVPGPPGPPGPPGH-PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 73 PGHP-PPGP 80
G P PPGP
Sbjct: 699 IGFPGPPGP 707
Score = 50.8 bits (120), Expect = 2e-07
Identities = 42/118 (35%), Positives = 42/118 (35%), Gaps = 40/118 (33%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-------------------PGP 42
PGPKG G PPG G P G PGP G P G PGP
Sbjct: 1276 PGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Query: 43 CGP--PPG--------------HGPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GP PPG PGP G P G PGP GPP GP P P
Sbjct: 1336 IGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP 1393
Score = 46.6 bits (109), Expect = 4e-06
Identities = 33/81 (40%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHGPGPCGPP 57
D GP+G G PPG G G GPP G PGP GPP H G G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 58 PHHG-PGPCGPPPGHGPGHPP 77
G PGP GPP G PP
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPP 1291
Score = 45.1 bits (105), Expect = 1e-05
Identities = 38/99 (38%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------------PGPCGPPP 47
DPG +G G PG G GP GP GPP G PGP G P
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPG 1367
Query: 48 GHG----PGPCGPPPHHGPGPCGP--PPGHGPGHPPPGP 80
G PGP GPP + GPCGP PG PGP
Sbjct: 1368 EPGMQGEPGPPGPPGN--LGPCGPRGKPGKDGKPGTPGP 1404
Score = 45.1 bits (105), Expect = 1e-05
Identities = 39/101 (38%), Positives = 40/101 (39%), Gaps = 26/101 (25%)
Query: 4 GPKGHCHCGGHGHPPGHCGP--PPG--------------HGPGPCGPPPHHG----PGPC 43
G KG+ G PPG GP PPG PGP G P G PGP
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPP 1378
Query: 44 GPPPGHGP-GPCGPPPHHG----PGPCGPPPGHG-PGHPPP 78
GPP GP GP G P G PGP G G G P P
Sbjct: 1379 GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGP 1419
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/75 (42%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHG----PGPCG 55
DPG G PPG G P G PGP GPP + GP GP G P G PGP G
Sbjct: 1347 DPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAG 1406
Query: 56 PPPHHG----PGPCG 66
+ G PGP G
Sbjct: 1407 EKGNKGSKGEPGPAG 1421
Score = 42.7 bits (99), Expect = 6e-05
Identities = 39/107 (36%), Positives = 39/107 (36%), Gaps = 31/107 (28%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-------PGPCGPPPHHG-------------PG 41
D G KG G PPGH GP G PG G P HG PG
Sbjct: 1078 DMGKKGEM---GQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 42 PCGPP--PGH--GPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GPP PG PGP G G PGP G G PPGP
Sbjct: 1135 IRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 40.4 bits (93), Expect = 3e-04
Identities = 35/91 (38%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPP-------PGHGP 51
PGP+G G PPG G P PG G P G G G P PG P
Sbjct: 362 PGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG-SP 420
Query: 52 GPCGPPPHHG-PGPCGPPPGHGPGHPPPGPH 81
G G P G PGP GPP PPG H
Sbjct: 421 GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDH 451
Score = 40.4 bits (93), Expect = 3e-04
Identities = 36/91 (39%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 12 GGHGHP--PGHCGPPPGH------------GPGPCGPPPHHG----PGPCGPPPGHG-PG 52
G G P PG GPP H PGP GPP G PG G P G PG
Sbjct: 1245 GSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPG 1304
Query: 53 PCGPPPHHG-PGPCGPP--PGHGPGHPPPGP 80
P G P G PG G PG PPGP
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Score = 39.7 bits (91), Expect = 5e-04
Identities = 39/96 (40%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHH------GPGPCGPP--PGH---- 49
PG KG G G G P HG G G P + PGP G P PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKK 1082
Query: 50 -GPGPCGPPPHHGP-GPCGPPPGHG-PGHP-PPGPH 81
G GPP H GP GP G P G PG P PGPH
Sbjct: 1083 GEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH 1118
Score = 37.0 bits (84), Expect = 0.003
Identities = 36/96 (37%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-------------PGPCGPPPG 48
DPG KG G P G G P PG G P G PGP G
Sbjct: 533 DPGLKGEK--GETLQPEGQVGVPGD--PGLRGQPGRKGLDGIPGTPGVKGLPGPKGELAL 588
Query: 49 HGP----GPCGPPPHHG-PGPCGP--PPGHGPGHPP 77
G GP G P G PGP GP PPG+GP P
Sbjct: 589 SGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEP 624
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGP--PPGH-GPGPCGPP 57
DPG G G PPG GP GP GPP G PG GP P GH G G
Sbjct: 172 DPGLPGAPGPQGLPGPPGFPGP-----VGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHK 226
Query: 58 PHHG----PGPCGPP 68
G GP GPP
Sbjct: 227 GERGVKGLTGPPGPP 241
Score = 34.7 bits (78), Expect = 0.017
Identities = 35/80 (43%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG KG G G P PG PG G P G PGP G PPG GPP HG
Sbjct: 397 PGLKGSK--GERGRPGKDAMGTPG-SPGCAGSPGLPGSPGPPG-PPGDIVFRKGPPGDHG 452
Query: 62 -PGPCGPP--PG-HGPGHPP 77
PG G P PG GP P
Sbjct: 453 LPGYLGSPGIPGVDGPKGEP 472
Score = 33.5 bits (75), Expect = 0.037
Identities = 33/83 (39%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG G C G P G G P PGP GP G PG G PG G P G
Sbjct: 676 PGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSL--GCPGKMGEPGLPG 733
Query: 62 ----PGPCGPP----PGHGPGHP 76
PG G P PG GPG P
Sbjct: 734 KPGLPGAKGEPAVAMPG-GPGTP 755
Score = 32.0 bits (71), Expect = 0.11
Identities = 38/134 (28%), Positives = 39/134 (29%), Gaps = 60/134 (44%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP------------------------------GPC 32
PG G+ G PG GPP GP GP
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPK 838
Query: 33 GPPPHHG------PGPCGPP--PGH--------------GPGPCGPPPHHG-------PG 63
G P G PG G P PGH PG GPP G PG
Sbjct: 839 GDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPG 898
Query: 64 PCGPP-PGHGPGHP 76
GPP P PG P
Sbjct: 899 AIGPPGPPGNPGTP 912
Score = 29.3 bits (64), Expect = 0.71
Identities = 30/98 (30%), Positives = 30/98 (30%), Gaps = 21/98 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG------------ 50
PGP G G PG G G P P PG G G
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 51 ----PGPCGPPPHHG-PGPCGPP----PGHGPGHPPPG 79
GP GP G PGP G P PG PPG
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPG 1245
Score = 28.5 bits (62), Expect = 1.2
Identities = 39/114 (34%), Positives = 41/114 (35%), Gaps = 35/114 (30%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG----------PGPCGPPP 47
+PG KG G G G P G PGP GPP G PG G P
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 48 GHG----PGPCGPPPHHG-PGPCGPP--PG-HG-------PGHP------PPGP 80
G PG G G PG G P PG HG PG+ PPGP
Sbjct: 1016 SMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 56.2 bits (134), Expect = 5e-09
Identities = 50/129 (38%), Positives = 51/129 (39%), Gaps = 52/129 (40%)
Query: 3 PGPKGHCHCGGH----------GHP--PGHCGP--PPGHG-------------PGPCGPP 35
PGPKG G G P PG GP PPG+G PG GPP
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPP 639
Query: 36 PHHG-----------PGPCGP--PPGHGPGPCGPPPHHG----------PGPCGPPPGHG 72
G PGP GP PPGH PGP GPP G PGP G P G
Sbjct: 640 GEAGPRGELSVSTPVPGPPGPPGPPGH-PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 73 PGHP-PPGP 80
G P PPGP
Sbjct: 699 IGFPGPPGP 707
Score = 50.8 bits (120), Expect = 2e-07
Identities = 42/118 (35%), Positives = 42/118 (35%), Gaps = 40/118 (33%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-------------------PGP 42
PGPKG G PPG G P G PGP G P G PGP
Sbjct: 1276 PGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Query: 43 CGP--PPG--------------HGPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GP PPG PGP G P G PGP GPP GP P P
Sbjct: 1336 IGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP 1393
Score = 46.6 bits (109), Expect = 4e-06
Identities = 33/81 (40%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHGPGPCGPP 57
D GP+G G PPG G G GPP G PGP GPP H G G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 58 PHHG-PGPCGPPPGHGPGHPP 77
G PGP GPP G PP
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPP 1291
Score = 45.1 bits (105), Expect = 1e-05
Identities = 38/99 (38%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------------PGPCGPPP 47
DPG +G G PG G GP GP GPP G PGP G P
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPG 1367
Query: 48 GHG----PGPCGPPPHHGPGPCGP--PPGHGPGHPPPGP 80
G PGP GPP + GPCGP PG PGP
Sbjct: 1368 EPGMQGEPGPPGPPGN--LGPCGPRGKPGKDGKPGTPGP 1404
Score = 45.1 bits (105), Expect = 1e-05
Identities = 39/101 (38%), Positives = 40/101 (39%), Gaps = 26/101 (25%)
Query: 4 GPKGHCHCGGHGHPPGHCGP--PPG--------------HGPGPCGPPPHHG----PGPC 43
G KG+ G PPG GP PPG PGP G P G PGP
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPP 1378
Query: 44 GPPPGHGP-GPCGPPPHHG----PGPCGPPPGHG-PGHPPP 78
GPP GP GP G P G PGP G G G P P
Sbjct: 1379 GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGP 1419
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/75 (42%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHG----PGPCG 55
DPG G PPG G P G PGP GPP + GP GP G P G PGP G
Sbjct: 1347 DPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAG 1406
Query: 56 PPPHHG----PGPCG 66
+ G PGP G
Sbjct: 1407 EKGNKGSKGEPGPAG 1421
Score = 42.7 bits (99), Expect = 6e-05
Identities = 39/107 (36%), Positives = 39/107 (36%), Gaps = 31/107 (28%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-------PGPCGPPPHHG-------------PG 41
D G KG G PPGH GP G PG G P HG PG
Sbjct: 1078 DMGKKGEM---GQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 42 PCGPP--PGH--GPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GPP PG PGP G G PGP G G PPGP
Sbjct: 1135 IRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 40.4 bits (93), Expect = 3e-04
Identities = 35/91 (38%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPP-------PGHGP 51
PGP+G G PPG G P PG G P G G G P PG P
Sbjct: 362 PGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG-SP 420
Query: 52 GPCGPPPHHG-PGPCGPPPGHGPGHPPPGPH 81
G G P G PGP GPP PPG H
Sbjct: 421 GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDH 451
Score = 40.4 bits (93), Expect = 3e-04
Identities = 36/91 (39%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 12 GGHGHP--PGHCGPPPGH------------GPGPCGPPPHHG----PGPCGPPPGHG-PG 52
G G P PG GPP H PGP GPP G PG G P G PG
Sbjct: 1245 GSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPG 1304
Query: 53 PCGPPPHHG-PGPCGPP--PGHGPGHPPPGP 80
P G P G PG G PG PPGP
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Score = 39.7 bits (91), Expect = 5e-04
Identities = 39/96 (40%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHH------GPGPCGPP--PGH---- 49
PG KG G G G P HG G G P + PGP G P PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKK 1082
Query: 50 -GPGPCGPPPHHGP-GPCGPPPGHG-PGHP-PPGPH 81
G GPP H GP GP G P G PG P PGPH
Sbjct: 1083 GEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH 1118
Score = 37.0 bits (84), Expect = 0.003
Identities = 36/96 (37%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-------------PGPCGPPPG 48
DPG KG G P G G P PG G P G PGP G
Sbjct: 533 DPGLKGEK--GETLQPEGQVGVPGD--PGLRGQPGRKGLDGIPGTPGVKGLPGPKGELAL 588
Query: 49 HGP----GPCGPPPHHG-PGPCGP--PPGHGPGHPP 77
G GP G P G PGP GP PPG+GP P
Sbjct: 589 SGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEP 624
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGP--PPGH-GPGPCGPP 57
DPG G G PPG GP GP GPP G PG GP P GH G G
Sbjct: 172 DPGLPGAPGPQGLPGPPGFPGP-----VGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHK 226
Query: 58 PHHG----PGPCGPP 68
G GP GPP
Sbjct: 227 GERGVKGLTGPPGPP 241
Score = 34.7 bits (78), Expect = 0.017
Identities = 35/80 (43%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG KG G G P PG PG G P G PGP G PPG GPP HG
Sbjct: 397 PGLKGSK--GERGRPGKDAMGTPG-SPGCAGSPGLPGSPGPPG-PPGDIVFRKGPPGDHG 452
Query: 62 -PGPCGPP--PG-HGPGHPP 77
PG G P PG GP P
Sbjct: 453 LPGYLGSPGIPGVDGPKGEP 472
Score = 33.5 bits (75), Expect = 0.037
Identities = 33/83 (39%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG G C G P G G P PGP GP G PG G PG G P G
Sbjct: 676 PGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSL--GCPGKMGEPGLPG 733
Query: 62 ----PGPCGPP----PGHGPGHP 76
PG G P PG GPG P
Sbjct: 734 KPGLPGAKGEPAVAMPG-GPGTP 755
Score = 32.0 bits (71), Expect = 0.11
Identities = 38/134 (28%), Positives = 39/134 (29%), Gaps = 60/134 (44%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP------------------------------GPC 32
PG G+ G PG GPP GP GP
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPK 838
Query: 33 GPPPHHG------PGPCGPP--PGH--------------GPGPCGPPPHHG-------PG 63
G P G PG G P PGH PG GPP G PG
Sbjct: 839 GDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPG 898
Query: 64 PCGPP-PGHGPGHP 76
GPP P PG P
Sbjct: 899 AIGPPGPPGNPGTP 912
Score = 29.3 bits (64), Expect = 0.71
Identities = 30/98 (30%), Positives = 30/98 (30%), Gaps = 21/98 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG------------ 50
PGP G G PG G G P P PG G G
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 51 ----PGPCGPPPHHG-PGPCGPP----PGHGPGHPPPG 79
GP GP G PGP G P PG PPG
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPG 1245
Score = 28.5 bits (62), Expect = 1.2
Identities = 39/114 (34%), Positives = 41/114 (35%), Gaps = 35/114 (30%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG----------PGPCGPPP 47
+PG KG G G G P G PGP GPP G PG G P
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 48 GHG----PGPCGPPPHHG-PGPCGPP--PG-HG-------PGHP------PPGP 80
G PG G G PG G P PG HG PG+ PPGP
Sbjct: 1016 SMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 56.2 bits (134), Expect = 5e-09
Identities = 50/129 (38%), Positives = 51/129 (39%), Gaps = 52/129 (40%)
Query: 3 PGPKGHCHCGGH----------GHP--PGHCGP--PPGHG-------------PGPCGPP 35
PGPKG G G P PG GP PPG+G PG GPP
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPP 639
Query: 36 PHHG-----------PGPCGP--PPGHGPGPCGPPPHHG----------PGPCGPPPGHG 72
G PGP GP PPGH PGP GPP G PGP G P G
Sbjct: 640 GEAGPRGELSVSTPVPGPPGPPGPPGH-PGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 73 PGHP-PPGP 80
G P PPGP
Sbjct: 699 IGFPGPPGP 707
Score = 50.8 bits (120), Expect = 2e-07
Identities = 42/118 (35%), Positives = 42/118 (35%), Gaps = 40/118 (33%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHG-------------------PGP 42
PGPKG G PPG G P G PGP G P G PGP
Sbjct: 1276 PGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Query: 43 CGP--PPG--------------HGPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GP PPG PGP G P G PGP GPP GP P P
Sbjct: 1336 IGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKP 1393
Score = 46.6 bits (109), Expect = 4e-06
Identities = 33/81 (40%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPPPGHGPGPCGPP 57
D GP+G G PPG G G GPP G PGP GPP H G G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 58 PHHG-PGPCGPPPGHGPGHPP 77
G PGP GPP G PP
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPP 1291
Score = 45.1 bits (105), Expect = 1e-05
Identities = 38/99 (38%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGP-GPCGPPPHHG-------------PGPCGPPP 47
DPG +G G PG G GP GP GPP G PGP G P
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPG 1367
Query: 48 GHG----PGPCGPPPHHGPGPCGP--PPGHGPGHPPPGP 80
G PGP GPP + GPCGP PG PGP
Sbjct: 1368 EPGMQGEPGPPGPPGN--LGPCGPRGKPGKDGKPGTPGP 1404
Score = 45.1 bits (105), Expect = 1e-05
Identities = 39/101 (38%), Positives = 40/101 (39%), Gaps = 26/101 (25%)
Query: 4 GPKGHCHCGGHGHPPGHCGP--PPG--------------HGPGPCGPPPHHG----PGPC 43
G KG+ G PPG GP PPG PGP G P G PGP
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPP 1378
Query: 44 GPPPGHGP-GPCGPPPHHG----PGPCGPPPGHG-PGHPPP 78
GPP GP GP G P G PGP G G G P P
Sbjct: 1379 GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGP 1419
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/75 (42%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHHGP-GPCGPPPGHG----PGPCG 55
DPG G PPG G P G PGP GPP + GP GP G P G PGP G
Sbjct: 1347 DPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAG 1406
Query: 56 PPPHHG----PGPCG 66
+ G PGP G
Sbjct: 1407 EKGNKGSKGEPGPAG 1421
Score = 42.7 bits (99), Expect = 6e-05
Identities = 39/107 (36%), Positives = 39/107 (36%), Gaps = 31/107 (28%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG-------PGPCGPPPHHG-------------PG 41
D G KG G PPGH GP G PG G P HG PG
Sbjct: 1078 DMGKKGEM---GQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 42 PCGPP--PGH--GPGPCGPPPHHG----PGPCGPPPGHGPGHPPPGP 80
GPP PG PGP G G PGP G G PPGP
Sbjct: 1135 IRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 40.4 bits (93), Expect = 3e-04
Identities = 35/91 (38%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG----PGPCGPP-------PGHGP 51
PGP+G G PPG G P PG G P G G G P PG P
Sbjct: 362 PGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG-SP 420
Query: 52 GPCGPPPHHG-PGPCGPPPGHGPGHPPPGPH 81
G G P G PGP GPP PPG H
Sbjct: 421 GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDH 451
Score = 40.4 bits (93), Expect = 3e-04
Identities = 36/91 (39%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 12 GGHGHP--PGHCGPPPGH------------GPGPCGPPPHHG----PGPCGPPPGHG-PG 52
G G P PG GPP H PGP GPP G PG G P G PG
Sbjct: 1245 GSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPG 1304
Query: 53 PCGPPPHHG-PGPCGPP--PGHGPGHPPPGP 80
P G P G PG G PG PPGP
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGP 1335
Score = 39.7 bits (91), Expect = 5e-04
Identities = 39/96 (40%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHG-PGPCGPPPHH------GPGPCGPP--PGH---- 49
PG KG G G G P HG G G P + PGP G P PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKK 1082
Query: 50 -GPGPCGPPPHHGP-GPCGPPPGHG-PGHP-PPGPH 81
G GPP H GP GP G P G PG P PGPH
Sbjct: 1083 GEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH 1118
Score = 37.0 bits (84), Expect = 0.003
Identities = 36/96 (37%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-------------PGPCGPPPG 48
DPG KG G P G G P PG G P G PGP G
Sbjct: 533 DPGLKGEK--GETLQPEGQVGVPGD--PGLRGQPGRKGLDGIPGTPGVKGLPGPKGELAL 588
Query: 49 HGP----GPCGPPPHHG-PGPCGP--PPGHGPGHPP 77
G GP G P G PGP GP PPG+GP P
Sbjct: 589 SGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEP 624
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGP--PPGH-GPGPCGPP 57
DPG G G PPG GP GP GPP G PG GP P GH G G
Sbjct: 172 DPGLPGAPGPQGLPGPPGFPGP-----VGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHK 226
Query: 58 PHHG----PGPCGPP 68
G GP GPP
Sbjct: 227 GERGVKGLTGPPGPP 241
Score = 34.7 bits (78), Expect = 0.017
Identities = 35/80 (43%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG KG G G P PG PG G P G PGP G PPG GPP HG
Sbjct: 397 PGLKGSK--GERGRPGKDAMGTPG-SPGCAGSPGLPGSPGPPG-PPGDIVFRKGPPGDHG 452
Query: 62 -PGPCGPP--PG-HGPGHPP 77
PG G P PG GP P
Sbjct: 453 LPGYLGSPGIPGVDGPKGEP 472
Score = 33.5 bits (75), Expect = 0.037
Identities = 33/83 (39%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHG-PGPCGPPPGHGPGPCGPPPHHG 61
PG G C G P G G P PGP GP G PG G PG G P G
Sbjct: 676 PGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSL--GCPGKMGEPGLPG 733
Query: 62 ----PGPCGPP----PGHGPGHP 76
PG G P PG GPG P
Sbjct: 734 KPGLPGAKGEPAVAMPG-GPGTP 755
Score = 32.0 bits (71), Expect = 0.11
Identities = 38/134 (28%), Positives = 39/134 (29%), Gaps = 60/134 (44%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGP------------------------------GPC 32
PG G+ G PG GPP GP GP
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPK 838
Query: 33 GPPPHHG------PGPCGPP--PGH--------------GPGPCGPPPHHG-------PG 63
G P G PG G P PGH PG GPP G PG
Sbjct: 839 GDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPG 898
Query: 64 PCGPP-PGHGPGHP 76
GPP P PG P
Sbjct: 899 AIGPPGPPGNPGTP 912
Score = 29.3 bits (64), Expect = 0.71
Identities = 30/98 (30%), Positives = 30/98 (30%), Gaps = 21/98 (21%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHG------------ 50
PGP G G PG G G P P PG G G
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 51 ----PGPCGPPPHHG-PGPCGPP----PGHGPGHPPPG 79
GP GP G PGP G P PG PPG
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPG 1245
Score = 28.5 bits (62), Expect = 1.2
Identities = 39/114 (34%), Positives = 41/114 (35%), Gaps = 35/114 (30%)
Query: 2 DPGPKGHCHCGGHGHPPGHCGPPPGHG----PGPCGPPPHHG----------PGPCGPPP 47
+PG KG G G G P G PGP GPP G PG G P
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 48 GHG----PGPCGPPPHHG-PGPCGPP--PG-HG-------PGHP------PPGP 80
G PG G G PG G P PG HG PG+ PPGP
Sbjct: 1016 SMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/64 (50%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHP 76
PP PG GPGP GP P GP P HG G PP PGP G PPG PG P
Sbjct: 222 PPSVSATGPGPGPGP-GPGPGPGPAPPNYSRPHGMGGPNMPP---PGPSGVPPGM-PGQP 276
Query: 77 PPGP 80
P GP
Sbjct: 277 PGGP 280
Score = 48.5 bits (114), Expect = 1e-06
Identities = 33/69 (47%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 15 GHPPGHCGPPPGHGPGPCGPP---PHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH 71
G PG GP PG GPGP P PH GP PP PGP G P PG G PPG
Sbjct: 229 GPGPGP-GPGPGPGPGPAPPNYSRPHGMGGPNMPP----PGPSGVP----PGMPGQPPGG 279
Query: 72 GPGHPPPGP 80
P P GP
Sbjct: 280 PPKPWPEGP 288
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 28/85 (32%)
Query: 22 GPPPGHGPGPCGPPPH----HG--------PGPCGPPPGHGPGPCGPPPHHGPGPCGPP- 68
GP PG GPGP PP+ HG PGP G PPG P G PP P P GP
Sbjct: 233 GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPK--PWPEGPMA 290
Query: 69 -------------PGHGPGHPPPGP 80
P G P P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAP 315
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/58 (43%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
PP G P P GP P GP P G G PGP H GP PP G P GP
Sbjct: 6 PPLGGTPRP-GPSPGPGPSP-GAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGP 61
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/78 (37%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 12 GGHGHPPGHCGPPPGHGPGPC--GP-----PPHHGPGPCGPP-PGHGPGPCGPPPHHGPG 63
G G PPG G PPG P P GP P P PP P P P P
Sbjct: 264 GPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS 323
Query: 64 PCGPPPGHGPGHP-PPGP 80
P PP PG P P P
Sbjct: 324 PVMPPQTQSPGQPAQPAP 341
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 53 PCGPPPH---HGPGPCGPPPGHGPGHPPPGPHH 82
P PPP GPGP GP PG GPG P P++
Sbjct: 218 PTLPPPSVSATGPGP-GPGPGPGPGPGPAPPNY 249
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPC--GP-----PPGHGPGPCG 55
P P + G G P P G PG G PP P P GP P P
Sbjct: 244 PAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
Query: 56 PPPHHG---PGPCGPPPGHGPGHPP 77
PP G P P PP P PP
Sbjct: 304 PPQPTGRPSPAPPAVPPAASPVMPP 328
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 22 GPPPGHGPGP---CGPPPHHGPG-------PCGPPPGHGPGPCGPPPHHGPG 63
GP PG GP P GP P PG P PP G P P GPG
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAG----HPIPTQGPG 62
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/64 (50%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHP 76
PP PG GPGP GP P GP P HG G PP PGP G PPG PG P
Sbjct: 222 PPSVSATGPGPGPGP-GPGPGPGPAPPNYSRPHGMGGPNMPP---PGPSGVPPGM-PGQP 276
Query: 77 PPGP 80
P GP
Sbjct: 277 PGGP 280
Score = 48.5 bits (114), Expect = 1e-06
Identities = 33/69 (47%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 15 GHPPGHCGPPPGHGPGPCGPP---PHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH 71
G PG GP PG GPGP P PH GP PP PGP G P PG G PPG
Sbjct: 229 GPGPGP-GPGPGPGPGPAPPNYSRPHGMGGPNMPP----PGPSGVP----PGMPGQPPGG 279
Query: 72 GPGHPPPGP 80
P P GP
Sbjct: 280 PPKPWPEGP 288
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 28/85 (32%)
Query: 22 GPPPGHGPGPCGPPPH----HG--------PGPCGPPPGHGPGPCGPPPHHGPGPCGPP- 68
GP PG GPGP PP+ HG PGP G PPG P G PP P P GP
Sbjct: 233 GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPK--PWPEGPMA 290
Query: 69 -------------PGHGPGHPPPGP 80
P G P P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAP 315
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/58 (43%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
PP G P P GP P GP P G G PGP H GP PP G P GP
Sbjct: 6 PPLGGTPRP-GPSPGPGPSP-GAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGP 61
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/78 (37%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 12 GGHGHPPGHCGPPPGHGPGPC--GP-----PPHHGPGPCGPP-PGHGPGPCGPPPHHGPG 63
G G PPG G PPG P P GP P P PP P P P P
Sbjct: 264 GPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS 323
Query: 64 PCGPPPGHGPGHP-PPGP 80
P PP PG P P P
Sbjct: 324 PVMPPQTQSPGQPAQPAP 341
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 53 PCGPPPH---HGPGPCGPPPGHGPGHPPPGPHH 82
P PPP GPGP GP PG GPG P P++
Sbjct: 218 PTLPPPSVSATGPGP-GPGPGPGPGPGPAPPNY 249
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPC--GP-----PPGHGPGPCG 55
P P + G G P P G PG G PP P P GP P P
Sbjct: 244 PAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
Query: 56 PPPHHG---PGPCGPPPGHGPGHPP 77
PP G P P PP P PP
Sbjct: 304 PPQPTGRPSPAPPAVPPAASPVMPP 328
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 22 GPPPGHGPGP---CGPPPHHGPG-------PCGPPPGHGPGPCGPPPHHGPG 63
GP PG GP P GP P PG P PP G P P GPG
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAG----HPIPTQGPG 62
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/64 (50%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHP 76
PP PG GPGP GP P GP P HG G PP PGP G PPG PG P
Sbjct: 222 PPSVSATGPGPGPGP-GPGPGPGPAPPNYSRPHGMGGPNMPP---PGPSGVPPGM-PGQP 276
Query: 77 PPGP 80
P GP
Sbjct: 277 PGGP 280
Score = 48.5 bits (114), Expect = 1e-06
Identities = 33/69 (47%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 15 GHPPGHCGPPPGHGPGPCGPP---PHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH 71
G PG GP PG GPGP P PH GP PP PGP G P PG G PPG
Sbjct: 229 GPGPGP-GPGPGPGPGPAPPNYSRPHGMGGPNMPP----PGPSGVP----PGMPGQPPGG 279
Query: 72 GPGHPPPGP 80
P P GP
Sbjct: 280 PPKPWPEGP 288
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 28/85 (32%)
Query: 22 GPPPGHGPGPCGPPPH----HG--------PGPCGPPPGHGPGPCGPPPHHGPGPCGPP- 68
GP PG GPGP PP+ HG PGP G PPG P G PP P P GP
Sbjct: 233 GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPK--PWPEGPMA 290
Query: 69 -------------PGHGPGHPPPGP 80
P G P P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAP 315
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/58 (43%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
PP G P P GP P GP P G G PGP H GP PP G P GP
Sbjct: 6 PPLGGTPRP-GPSPGPGPSP-GAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGP 61
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/78 (37%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 12 GGHGHPPGHCGPPPGHGPGPC--GP-----PPHHGPGPCGPP-PGHGPGPCGPPPHHGPG 63
G G PPG G PPG P P GP P P PP P P P P
Sbjct: 264 GPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS 323
Query: 64 PCGPPPGHGPGHP-PPGP 80
P PP PG P P P
Sbjct: 324 PVMPPQTQSPGQPAQPAP 341
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 53 PCGPPPH---HGPGPCGPPPGHGPGHPPPGPHH 82
P PPP GPGP GP PG GPG P P++
Sbjct: 218 PTLPPPSVSATGPGP-GPGPGPGPGPGPAPPNY 249
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPC--GP-----PPGHGPGPCG 55
P P + G G P P G PG G PP P P GP P P
Sbjct: 244 PAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
Query: 56 PPPHHG---PGPCGPPPGHGPGHPP 77
PP G P P PP P PP
Sbjct: 304 PPQPTGRPSPAPPAVPPAASPVMPP 328
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 22 GPPPGHGPGP---CGPPPHHGPG-------PCGPPPGHGPGPCGPPPHHGPG 63
GP PG GP P GP P PG P PP G P P GPG
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAG----HPIPTQGPG 62
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/64 (50%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHP 76
PP PG GPGP GP P GP P HG G PP PGP G PPG PG P
Sbjct: 222 PPSVSATGPGPGPGP-GPGPGPGPAPPNYSRPHGMGGPNMPP---PGPSGVPPGM-PGQP 276
Query: 77 PPGP 80
P GP
Sbjct: 277 PGGP 280
Score = 48.5 bits (114), Expect = 1e-06
Identities = 33/69 (47%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 15 GHPPGHCGPPPGHGPGPCGPP---PHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH 71
G PG GP PG GPGP P PH GP PP PGP G P PG G PPG
Sbjct: 229 GPGPGP-GPGPGPGPGPAPPNYSRPHGMGGPNMPP----PGPSGVP----PGMPGQPPGG 279
Query: 72 GPGHPPPGP 80
P P GP
Sbjct: 280 PPKPWPEGP 288
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 28/85 (32%)
Query: 22 GPPPGHGPGPCGPPPH----HG--------PGPCGPPPGHGPGPCGPPPHHGPGPCGPP- 68
GP PG GPGP PP+ HG PGP G PPG P G PP P P GP
Sbjct: 233 GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPK--PWPEGPMA 290
Query: 69 -------------PGHGPGHPPPGP 80
P G P P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAP 315
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/58 (43%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
PP G P P GP P GP P G G PGP H GP PP G P GP
Sbjct: 6 PPLGGTPRP-GPSPGPGPSP-GAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGP 61
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/78 (37%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 12 GGHGHPPGHCGPPPGHGPGPC--GP-----PPHHGPGPCGPP-PGHGPGPCGPPPHHGPG 63
G G PPG G PPG P P GP P P PP P P P P
Sbjct: 264 GPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS 323
Query: 64 PCGPPPGHGPGHP-PPGP 80
P PP PG P P P
Sbjct: 324 PVMPPQTQSPGQPAQPAP 341
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 53 PCGPPPH---HGPGPCGPPPGHGPGHPPPGPHH 82
P PPP GPGP GP PG GPG P P++
Sbjct: 218 PTLPPPSVSATGPGP-GPGPGPGPGPGPAPPNY 249
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPC--GP-----PPGHGPGPCG 55
P P + G G P P G PG G PP P P GP P P
Sbjct: 244 PAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
Query: 56 PPPHHG---PGPCGPPPGHGPGHPP 77
PP G P P PP P PP
Sbjct: 304 PPQPTGRPSPAPPAVPPAASPVMPP 328
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 22 GPPPGHGPGP---CGPPPHHGPG-------PCGPPPGHGPGPCGPPPHHGPG 63
GP PG GP P GP P PG P PP G P P GPG
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAG----HPIPTQGPG 62
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/64 (50%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 17 PPGHCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHP 76
PP PG GPGP GP P GP P HG G PP PGP G PPG PG P
Sbjct: 222 PPSVSATGPGPGPGP-GPGPGPGPAPPNYSRPHGMGGPNMPP---PGPSGVPPGM-PGQP 276
Query: 77 PPGP 80
P GP
Sbjct: 277 PGGP 280
Score = 48.5 bits (114), Expect = 1e-06
Identities = 33/69 (47%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 15 GHPPGHCGPPPGHGPGPCGPP---PHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGH 71
G PG GP PG GPGP P PH GP PP PGP G P PG G PPG
Sbjct: 229 GPGPGP-GPGPGPGPGPAPPNYSRPHGMGGPNMPP----PGPSGVP----PGMPGQPPGG 279
Query: 72 GPGHPPPGP 80
P P GP
Sbjct: 280 PPKPWPEGP 288
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 28/85 (32%)
Query: 22 GPPPGHGPGPCGPPPH----HG--------PGPCGPPPGHGPGPCGPPPHHGPGPCGPP- 68
GP PG GPGP PP+ HG PGP G PPG P G PP P P GP
Sbjct: 233 GPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPK--PWPEGPMA 290
Query: 69 -------------PGHGPGHPPPGP 80
P G P P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAP 315
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/58 (43%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 23 PPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGHPPPGP 80
PP G P P GP P GP P G G PGP H GP PP G P GP
Sbjct: 6 PPLGGTPRP-GPSPGPGPSP-GAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGP 61
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/78 (37%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 12 GGHGHPPGHCGPPPGHGPGPC--GP-----PPHHGPGPCGPP-PGHGPGPCGPPPHHGPG 63
G G PPG G PPG P P GP P P PP P P P P
Sbjct: 264 GPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS 323
Query: 64 PCGPPPGHGPGHP-PPGP 80
P PP PG P P P
Sbjct: 324 PVMPPQTQSPGQPAQPAP 341
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 53 PCGPPPH---HGPGPCGPPPGHGPGHPPPGPHH 82
P PPP GPGP GP PG GPG P P++
Sbjct: 218 PTLPPPSVSATGPGP-GPGPGPGPGPGPAPPNY 249
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 3 PGPKGHCHCGGHGHPPGHCGPPPGHGPGPCGPPPHHGPGPC--GP-----PPGHGPGPCG 55
P P + G G P P G PG G PP P P GP P P
Sbjct: 244 PAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
Query: 56 PPPHHG---PGPCGPPPGHGPGHPP 77
PP G P P PP P PP
Sbjct: 304 PPQPTGRPSPAPPAVPPAASPVMPP 328
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 22 GPPPGHGPGP---CGPPPHHGPG-------PCGPPPGHGPGPCGPPPHHGPG 63
GP PG GP P GP P PG P PP G P P GPG
Sbjct: 15 GPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAG----HPIPTQGPG 62
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.163 0.676
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,265,877
Number of Sequences: 37866
Number of extensions: 1480232
Number of successful extensions: 26400
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 957
Number of HSP's that attempted gapping in prelim test: 5315
Number of HSP's gapped (non-prelim): 9743
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.