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Search of human proteins with 223972638
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens] 834 0.0
gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens] 807 0.0
gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 793 0.0
gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 793 0.0
gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens] 608 e-174
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 31 2.3
gi|254281232 zinc finger and SCAN domain containing 12 [Homo sap... 30 3.0
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 30 3.9
gi|239752435 PREDICTED: similar to melanoma antigen family C, 2 ... 30 3.9
gi|239746952 PREDICTED: similar to melanoma antigen family C, 2 ... 30 3.9
gi|4557317 annexin A11 [Homo sapiens] 30 3.9
gi|22165433 annexin A11 [Homo sapiens] 30 3.9
gi|22165431 annexin A11 [Homo sapiens] 30 3.9
gi|49087132 sal-like 2 [Homo sapiens] 30 3.9
gi|112421108 capicua homolog [Homo sapiens] 30 3.9
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 30 3.9
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 30 5.0
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 30 5.0
gi|38505213 YTH domain containing 2 [Homo sapiens] 30 5.0
gi|154277120 spectrin repeat containing, nuclear envelope 1 isof... 29 6.6
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 29 6.6
gi|118498364 dapper 1 isoform 2 [Homo sapiens] 29 6.6
gi|24158478 dapper 1 isoform 1 [Homo sapiens] 29 6.6
gi|49472835 bridging integrator 2 [Homo sapiens] 29 6.6
gi|48762750 phosphodiesterase 9A isoform o [Homo sapiens] 29 8.6
gi|48762748 phosphodiesterase 9A isoform n [Homo sapiens] 29 8.6
gi|48762746 phosphodiesterase 9A isoform m [Homo sapiens] 29 8.6
gi|4505675 phosphodiesterase 9A isoform a [Homo sapiens] 29 8.6
gi|225690502 junctophilin 4 [Homo sapiens] 29 8.6
gi|225690500 junctophilin 4 [Homo sapiens] 29 8.6
>gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens]
Length = 402
Score = 834 bits (2155), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALGCLSIYYEKEPLTIV 300
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALGCLSIYYEKEPLTIV
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALGCLSIYYEKEPLTIV 300
Query: 301 KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIEL 360
KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIEL
Sbjct: 301 KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIEL 360
Query: 361 VDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQHQLCHWSVT 402
VDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQHQLCHWSVT
Sbjct: 361 VDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQHQLCHWSVT 402
>gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens]
Length = 439
Score = 807 bits (2084), Expect = 0.0
Identities = 392/398 (98%), Positives = 394/398 (98%), Gaps = 2/398 (0%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALGCLSIYYEKEPLTIV 300
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALGCLSIYYEKEPLTIV
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALGCLSIYYEKEPLTIV 300
Query: 301 KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIEL 360
KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIEL
Sbjct: 301 KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIEL 360
Query: 361 VDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQHQLCH 398
VDDHFEGSLRRPLSWKSLAALSRVSVNVSK + LC+
Sbjct: 361 VDDHFEGSLRRPLSWKSLAALSRVSVNVSK--ELMLCY 396
>gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 793 bits (2047), Expect = 0.0
Identities = 392/424 (92%), Positives = 394/424 (92%), Gaps = 28/424 (6%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPN------------------------- 275
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPN
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 300
Query: 276 -EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 334
EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 301 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 360
Query: 335 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQH 394
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK +
Sbjct: 361 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK--EL 418
Query: 395 QLCH 398
LC+
Sbjct: 419 MLCY 422
>gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 793 bits (2047), Expect = 0.0
Identities = 392/424 (92%), Positives = 394/424 (92%), Gaps = 28/424 (6%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
Query: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS
Sbjct: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
Query: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPN------------------------- 275
QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPN
Sbjct: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 300
Query: 276 -EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 334
EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 301 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 360
Query: 335 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQH 394
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK +
Sbjct: 361 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK--EL 418
Query: 395 QLCH 398
LC+
Sbjct: 419 MLCY 422
>gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens]
Length = 406
Score = 608 bits (1567), Expect = e-174
Identities = 326/424 (76%), Positives = 329/424 (77%), Gaps = 87/424 (20%)
Query: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
Sbjct: 1 MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL 60
Query: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ
Sbjct: 61 YGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQ 120
Query: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKS 180
DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSV
Sbjct: 121 DESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSV-------- 172
Query: 181 GGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGS 240
G H ED S H+ GL H
Sbjct: 173 ----------------RGLH----------HEDGS--QHI------------GLLH---- 188
Query: 241 QHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPN------------------------- 275
PGDRGPDHEYVLVEEAECAMSEREAAPN
Sbjct: 189 -------PGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLS 241
Query: 276 -EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 334
EEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL
Sbjct: 242 LEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGL 301
Query: 335 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKVTQH 394
KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK +
Sbjct: 302 KYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSK--EL 359
Query: 395 QLCH 398
LC+
Sbjct: 360 MLCY 363
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 30.8 bits (68), Expect = 2.3
Identities = 44/155 (28%), Positives = 54/155 (34%), Gaps = 17/155 (10%)
Query: 110 WAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDK-LNSGMVSNMEGTAGGE 168
WA L R G S +D +PL P R +E K L G+ S+ G
Sbjct: 508 WARALPSRPGASRSGGLEESRDRPRPLPTEPAVRPKEPGTKRKGLGEGVPSSQRGP---R 564
Query: 169 RPSVVNGDSG--KSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQD 226
R S GD K G G + LG GS S + ED+S P + D
Sbjct: 565 RLSAEGGDKALHKMGPGGGKAKALGGAGSGSKGSAGGGSKRRLSSEDSSLEPDLAEMSLD 624
Query: 227 ALILQRGLHHEDGSQHIGL--------LHPGDRGP 253
L G + S G LH G RGP
Sbjct: 625 DSSLALG---AEASTFGGFPESPPPCPLHGGSRGP 656
>gi|254281232 zinc finger and SCAN domain containing 12 [Homo
sapiens]
Length = 611
Score = 30.4 bits (67), Expect = 3.0
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 115 MRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAG------GE 168
+R++G+ +++ + +P P +++ QV D N++ G+
Sbjct: 152 LRKEGEPSMSLQSMK---AQPKYESPELESQQEQVLDVETGNEYGNLKQEVSEEMEPHGK 208
Query: 169 RPSVVNGDSGKSGGVGDPREPLGCLQEGSGC-----HPTTESFEKSVREDASPLPHVCCC 223
S D KS G+ REP +E S C PT + S+ E++ H C
Sbjct: 209 TSSKFENDMSKSARCGETREPEEITEEPSACSREDKQPTCDENGVSLTENSDHTEHQRIC 268
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 177 SGKSGGVG---DPREPLGCL-QEGSGCHPTTESFEKSVREDASP 216
S GGVG DP +PLG +EG+GC P S +SP
Sbjct: 306 SSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSP 349
>gi|239752435 PREDICTED: similar to melanoma antigen family C, 2
[Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 3.9
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 26/171 (15%)
Query: 186 PREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDAL----------------- 228
P+ PL C P E EDA P V C+ + +
Sbjct: 173 PQNPLSSCSSSVSCSPMNEESSSQKEEDAGP---VLACQTEPITESEMLTIVITKYKDYF 229
Query: 229 --ILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALG 286
IL++ + + L+ + GPDH YV + A + E L+ L
Sbjct: 230 PVILEKACEFIELLFGLSLI---EVGPDHFYVFANTVDLADEGSDDTGRPENCLLILILS 286
Query: 287 CLSIYYEKEPLTIV-KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKY 336
+ I P ++ ++ KA V Y +K WV + L+Y
Sbjct: 287 VIFITGSCAPEEVIWEVLKAIGVYAGREHFVYGEPRELLTKVWVQEHYLEY 337
>gi|239746952 PREDICTED: similar to melanoma antigen family C, 2
[Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 3.9
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 26/171 (15%)
Query: 186 PREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDAL----------------- 228
P+ PL C P E EDA P V C+ + +
Sbjct: 173 PQNPLSSCSSSVSCSPMNEESSSQKEEDAGP---VLACQTEPITESEMLTIVITKYKDYF 229
Query: 229 --ILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLVYALG 286
IL++ + + L+ + GPDH YV + A + E L+ L
Sbjct: 230 PVILEKACEFIELLFGLSLI---EVGPDHFYVFANTVDLADEGSDDTGRPENCLLILILS 286
Query: 287 CLSIYYEKEPLTIV-KLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKY 336
+ I P ++ ++ KA V Y +K WV + L+Y
Sbjct: 287 VIFITGSCAPEEVIWEVLKAIGVYAGREHFVYGEPRELLTKVWVQEHYLEY 337
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 30.0 bits (66), Expect = 3.9
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 132 YTKPLEHPPVKRNEEAQVHDKLN----SGMVSNMEGTAGG-ERPSVVNGDSGKS------ 180
Y P PP+ + A + N SGM +NM GT GG P++ G G
Sbjct: 28 YPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFGGANMPNLYPGAPGAGYPPVPP 87
Query: 181 GGVGDP 186
GG G P
Sbjct: 88 GGFGQP 93
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 30.0 bits (66), Expect = 3.9
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 132 YTKPLEHPPVKRNEEAQVHDKLN----SGMVSNMEGTAGG-ERPSVVNGDSGKS------ 180
Y P PP+ + A + N SGM +NM GT GG P++ G G
Sbjct: 28 YPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFGGANMPNLYPGAPGAGYPPVPP 87
Query: 181 GGVGDP 186
GG G P
Sbjct: 88 GGFGQP 93
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 30.0 bits (66), Expect = 3.9
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 132 YTKPLEHPPVKRNEEAQVHDKLN----SGMVSNMEGTAGG-ERPSVVNGDSGKS------ 180
Y P PP+ + A + N SGM +NM GT GG P++ G G
Sbjct: 28 YPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSGTFGGANMPNLYPGAPGAGYPPVPP 87
Query: 181 GGVGDP 186
GG G P
Sbjct: 88 GGFGQP 93
>gi|49087132 sal-like 2 [Homo sapiens]
Length = 1007
Score = 30.0 bits (66), Expect = 3.9
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 105 QHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGT 164
Q +V A ++Q Q S + ++ + +E + D + ++
Sbjct: 739 QSTVSGAGSFPQQQSQQPSPEEELSEEE---------EEEDEEEEEDVTDEDSLAGRGSE 789
Query: 165 AGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLP 218
+GGE+ V GDS ++ G E +G + + +S EK+ ++ + P P
Sbjct: 790 SGGEKAISVRGDSEEASGA---EEEVGTVAAAATAGKEMDSNEKTTQQSSLPPP 840
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 30.0 bits (66), Expect = 3.9
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 32/155 (20%)
Query: 134 KPLEHPPVKRNEE------AQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPR 187
+P HP + A H++ G G+A ERP +S G G P
Sbjct: 60 QPASHPVASNQSKEPAESAAVAHERPPGGT-----GSADPERPP--GATCPESPGPGPPH 112
Query: 188 EPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDG-----SQH 242
PLG ++ G G PTTE E+AS P + L + H+D S
Sbjct: 113 -PLGVVESGKGPPPTTE-------EEASGPP-----GEPRLDSETESDHDDAFLSIMSPE 159
Query: 243 IGL-LHPGDRGPDHEYVLVEEAECAMSEREAAPNE 276
I L L PG R L +E + + + +PN+
Sbjct: 160 IQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNK 194
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 30.0 bits (66), Expect = 3.9
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 175 GDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGL 234
G SG V D R G + +G ++ S E P P + + L+ G+
Sbjct: 818 GPSGAQAAVTDSRNLTGQSGQNAGNLIILKNEAVSQNEPRQPNPDW----RYSASLRAGM 873
Query: 235 HHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAP 274
H + G+L G GPD ++ V A E +P
Sbjct: 874 HSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP 913
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 29.6 bits (65), Expect = 5.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 178 GKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQ 225
G GG+GDP + CL+ G+ CHP + + LP CCK+
Sbjct: 20 GVFGGIGDP---VTCLKSGAICHPVF-CPRRYKQIGTCGLPGTKCCKK 63
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 29.6 bits (65), Expect = 5.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 178 GKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQ 225
G GG+GDP + CL+ G+ CHP + + LP CCK+
Sbjct: 20 GVFGGIGDP---VTCLKSGAICHPVF-CPRRYKQIGTCGLPGTKCCKK 63
>gi|38505213 YTH domain containing 2 [Homo sapiens]
Length = 1430
Score = 29.6 bits (65), Expect = 5.0
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 96 MPIITSKRYQHSVEWAAELMRRQGQDE-STVRRILKDYTKPLEHPPVKRNEEAQVHDKLN 154
+P+ +S R +S + +A+ + DE +T R+L P HPP K + +H K
Sbjct: 1187 LPLASSWRSNNSRKSSADT---EFSDECTTAERVLMKSPSPALHPPQKYKDRGILHPKRG 1243
Query: 155 S---GMVSNMEGTAGGERPSVVNGDSGKSGGVG 184
+ S+++ T PS S S G G
Sbjct: 1244 TEDRSDQSSLKSTDSSSYPSPCASPSPPSSGKG 1276
>gi|154277120 spectrin repeat containing, nuclear envelope 1 isoform
3 [Homo sapiens]
Length = 982
Score = 29.3 bits (64), Expect = 6.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 254 DHEYVLVEEAECAM-----SEREAAPNEEAFFLVYALGCLSIYYEKEPLTIVKL 302
DH+Y L + E AM SE E +++ F+L A+G + + P VKL
Sbjct: 448 DHDYDLSRDLESAMSRALPSEDEEGQDDKDFYLRGAVGLSDVMIPESPEAYVKL 501
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 29.3 bits (64), Expect = 6.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 254 DHEYVLVEEAECAM-----SEREAAPNEEAFFLVYALGCLSIYYEKEPLTIVKL 302
DH+Y L + E AM SE E +++ F+L A+G + + P VKL
Sbjct: 8215 DHDYDLSRDLESAMSRALPSEDEEGQDDKDFYLRGAVGLSDVMIPESPEAYVKL 8268
>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
Length = 799
Score = 29.3 bits (64), Expect = 6.6
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 3 EAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRA--EMINNNVIVRNAEDIEQL 60
EA+ A + +R Y +P+P+P+ + + + A E + ++ +V +ED +
Sbjct: 652 EALRRARRGRRENVGLYPAPVPLPYASPYAYVASDSEYSAECESLFHSTVVDTSEDEQSN 711
Query: 61 YGKGYFGKGILSRSRPSF-----TISDPKLVAK--WKDMKTNMPIIT 100
Y FG S S F T SD + W +PI T
Sbjct: 712 YTTNCFGDSESSVSEGEFVGESTTTSDSEESGGLIWSQFVQTLPIQT 758
>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
Length = 836
Score = 29.3 bits (64), Expect = 6.6
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 3 EAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRA--EMINNNVIVRNAEDIEQL 60
EA+ A + +R Y +P+P+P+ + + + A E + ++ +V +ED +
Sbjct: 689 EALRRARRGRRENVGLYPAPVPLPYASPYAYVASDSEYSAECESLFHSTVVDTSEDEQSN 748
Query: 61 YGKGYFGKGILSRSRPSF-----TISDPKLVAK--WKDMKTNMPIIT 100
Y FG S S F T SD + W +PI T
Sbjct: 749 YTTNCFGDSESSVSEGEFVGESTTTSDSEESGGLIWSQFVQTLPIQT 795
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 29.3 bits (64), Expect = 6.6
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 39 IFRAEM--INNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISDP---KLVAKWKDMK 93
+F EM +N+N+ ++ +Q K + KG+ S SR S IS P V+
Sbjct: 219 VFYREMSKLNHNLYEVMSKLEKQHSNKVFVVKGLSSSSRRSLVISPPVRTATVSSPLTSP 278
Query: 94 TNMPIITSKRYQHSVEWAAELM--RRQGQDESTVRRILKDYTKPLEHPPVKRNEE 146
T+ ++ K SV +L QG+D S ++ +L++ E +EE
Sbjct: 279 TSPSTLSLKSESESVSATEDLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEE 333
>gi|48762750 phosphodiesterase 9A isoform o [Homo sapiens]
Length = 567
Score = 28.9 bits (63), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 186 PREPLGCLQEGSGCHPTTESFEKSV 210
PREP GC QEG P E +SV
Sbjct: 106 PREPQGCYQEGQRIPPEREELIQSV 130
>gi|48762748 phosphodiesterase 9A isoform n [Homo sapiens]
Length = 552
Score = 28.9 bits (63), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 186 PREPLGCLQEGSGCHPTTESFEKSV 210
PREP GC QEG P E +SV
Sbjct: 91 PREPQGCYQEGQRIPPEREELIQSV 115
>gi|48762746 phosphodiesterase 9A isoform m [Homo sapiens]
Length = 526
Score = 28.9 bits (63), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 186 PREPLGCLQEGSGCHPTTESFEKSV 210
PREP GC QEG P E +SV
Sbjct: 65 PREPQGCYQEGQRIPPEREELIQSV 89
>gi|4505675 phosphodiesterase 9A isoform a [Homo sapiens]
Length = 593
Score = 28.9 bits (63), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 186 PREPLGCLQEGSGCHPTTESFEKSV 210
PREP GC QEG P E +SV
Sbjct: 132 PREPQGCYQEGQRIPPEREELIQSV 156
>gi|225690502 junctophilin 4 [Homo sapiens]
Length = 628
Score = 28.9 bits (63), Expect = 8.6
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Query: 163 GTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCC 222
G AG + + ++ G+ P G G GC ++ S + ED PLP
Sbjct: 500 GGAGAQAEELAGYEAEDEAGMQGPGPRDGSPLLG-GCSDSSGSLREEEGEDEEPLP---- 554
Query: 223 CKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLV 282
L G E + + L RGPD + E E A +ER A P +V
Sbjct: 555 ----PLRAPAGTEPEPIAMLV-LRGSSSRGPDAGCLTEELGEPAATERPAQPGAANPLVV 609
Query: 283 YALGCLSI 290
A+ L +
Sbjct: 610 GAVALLDL 617
>gi|225690500 junctophilin 4 [Homo sapiens]
Length = 628
Score = 28.9 bits (63), Expect = 8.6
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Query: 163 GTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCC 222
G AG + + ++ G+ P G G GC ++ S + ED PLP
Sbjct: 500 GGAGAQAEELAGYEAEDEAGMQGPGPRDGSPLLG-GCSDSSGSLREEEGEDEEPLP---- 554
Query: 223 CKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFFLV 282
L G E + + L RGPD + E E A +ER A P +V
Sbjct: 555 ----PLRAPAGTEPEPIAMLV-LRGSSSRGPDAGCLTEELGEPAATERPAQPGAANPLVV 609
Query: 283 YALGCLSI 290
A+ L +
Sbjct: 610 GAVALLDL 617
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,398,511
Number of Sequences: 37866
Number of extensions: 841421
Number of successful extensions: 2269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2247
Number of HSP's gapped (non-prelim): 39
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.