Guide to the Human Genome
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Name: TSEN2 Sequence: fasta or formatted (465aa) NCBI GI: 13376882
Description:

tRNA-intron nuclease 2 isoform 1

Referenced in:

tRNA Enzymes

Other entries for this name:
alt mRNA [465aa] tRNA-intron nuclease 2 isoform 1
alt prot [439aa] tRNA-intron nuclease 2 isoform 2
alt prot [406aa] tRNA-intron nuclease 2 isoform 3
alt prot [402aa] tRNA-intron nuclease 2 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         23           2
 C cysteine            2.2         10           3
 D aspartate           4.5         21           2
 E glutamate           9.0         42           2
 F phenylalanine       3.2         15           2
 G glycine             6.5         30           2
 H histidine           3.2         15           2
 I isoleucine          4.5         21           2
 K lysine              6.7         31           1
 L leucine             9.0         42           3
 M methionine          2.8         13           1
 N asparagine          2.8         13           3
 P proline             6.2         29           2
 Q glutamine           3.2         15           1
 R arginine            7.3         34           2
 S serine              7.7         36           2
 T threonine           3.7         17           2
 V valine              6.9         32           2
 W tryptophan          1.3          6           1
 Y tyrosine            4.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tRNA-intron nuclease 2 isoform 1 
TSEN2                 1.000   tRNA-intron nuclease 2 isoform 1 
TSEN2                 0.929   tRNA-intron nuclease 2 isoform 2 
TSEN2                 0.826   tRNA-intron nuclease 2 isoform 4 
TSEN2                 0.804   tRNA-intron nuclease 2 isoform 3 
TSEN34                0.009   tRNA-intron endonuclease 34 
TSEN34                0.009   tRNA-intron endonuclease 34 
KIAA0913              0.006   hypothetical protein LOC23053 
KIF20B                0.006   M-phase phosphoprotein 1 
CIC                   0.006   capicua homolog 
ZSCAN12               0.005   zinc finger and SCAN domain containing 12 
SOX4                  0.005   SRY (sex determining region Y)-box 4 
ANXA11                0.005   annexin A11 
ANXA11                0.005   annexin A11 
ANXA11                0.005   annexin A11 
SALL2                 0.005   sal-like 2 
PCDHAC2               0.005   protocadherin alpha subfamily C, 2 isoform 1 precurso...
LOC100289462          0.005   PREDICTED: hypothetical protein XP_002342852 
DEFB4                 0.005   defensin, beta 4 precursor 
YTHDC2                0.005   YTH domain containing 2 
DACT1                 0.004   dapper 1 isoform 2 
DACT1                 0.004   dapper 1 isoform 1 
BIN2                  0.004   bridging integrator 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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