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Search of human proteins with 223718196
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223718196 perilipin [Homo sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223718196 perilipin [Homo sapiens] 1026 0.0
gi|223718203 perilipin [Homo sapiens] 1026 0.0
gi|34577059 adipose differentiation-related protein [Homo sapiens] 130 3e-30
gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo... 120 4e-27
gi|116292172 lipid storage droplet protein 5 [Homo sapiens] 99 1e-20
gi|209862789 microtubule associated monoxygenase, calponin and L... 44 3e-04
gi|19111150 angiomotin isoform 2 [Homo sapiens] 43 6e-04
gi|166064029 angiomotin isoform 1 [Homo sapiens] 43 6e-04
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 42 0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 40 0.007
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 39 0.012
gi|29029597 glutamate receptor KA2 precursor [Homo sapiens] 38 0.020
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 37 0.034
gi|27734911 DAZ interacting protein 1-like [Homo sapiens] 37 0.034
gi|23397672 homeobox D4 [Homo sapiens] 37 0.044
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 37 0.057
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 37 0.057
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 37 0.057
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 36 0.075
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 36 0.098
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 36 0.098
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain... 36 0.098
gi|116805342 human immunodeficiency virus type I enhancer bindin... 36 0.098
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.098
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.13
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 35 0.13
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 35 0.13
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 35 0.13
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 35 0.13
gi|26190608 synaptojanin 2 [Homo sapiens] 35 0.13
>gi|223718196 perilipin [Homo sapiens]
Length = 522
Score = 1026 bits (2653), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60
MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK
Sbjct: 1 MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60
Query: 61 GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120
GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI
Sbjct: 61 GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120
Query: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180
STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA
Sbjct: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180
Query: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240
LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA
Sbjct: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240
Query: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300
LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD
Sbjct: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300
Query: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360
TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM
Sbjct: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360
Query: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420
AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID
Sbjct: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420
Query: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480
NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP
Sbjct: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480
Query: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522
RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS
Sbjct: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522
>gi|223718203 perilipin [Homo sapiens]
Length = 522
Score = 1026 bits (2653), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60
MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK
Sbjct: 1 MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60
Query: 61 GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120
GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI
Sbjct: 61 GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120
Query: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180
STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA
Sbjct: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180
Query: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240
LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA
Sbjct: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240
Query: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300
LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD
Sbjct: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300
Query: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360
TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM
Sbjct: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360
Query: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420
AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID
Sbjct: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420
Query: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480
NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP
Sbjct: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480
Query: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522
RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS
Sbjct: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522
>gi|34577059 adipose differentiation-related protein [Homo sapiens]
Length = 437
Score = 130 bits (327), Expect = 3e-30
Identities = 117/453 (25%), Positives = 199/453 (43%), Gaps = 62/453 (13%)
Query: 17 QENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEKGVQSASSLAAWSMEPV 76
Q +V+ RV+ LP+VS T + Y STK+ +P + SVC E GV++ +S+A S P+
Sbjct: 9 QPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKSVCEMAENGVKTITSVAMTSALPI 68
Query: 77 VRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASE-------LKDTISTRLRSARN 129
+++L Q AN AC+GLD +EE++P L P +I + KD ++T + A++
Sbjct: 69 IQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQIVANAKGAVTGAKDAVTTTVTGAKD 128
Query: 130 SISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLALGSIEKVVE 189
S++ I DK GA E V + +R +L S G + AL E +VE
Sbjct: 129 SVASTITGVMDKTKGAVTGSVEKTKSVVSGSINTVLGSRMMQLVSSGVENALTKSELLVE 188
Query: 190 YLLPPDKE----ESAPAPGHQQAQKSPKAKPSLLSRVGALTNTL-SRYTVQTMAR---AL 241
LP +E E+ G Q KPS R+G+L+ L SR Q ++R A
Sbjct: 189 QYLPLTEEELEKEAKKVEGFDLVQ-----KPSYYVRLGSLSTKLHSRAYQQALSRVKEAK 243
Query: 242 EQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTDT 301
++ + V L A+ A Q + + ++ + W+ E +
Sbjct: 244 QKSQQTISQLHSTVHLIEFARKNVYSANQKIQDAQDKLYLSWV-----------EWKRSI 292
Query: 302 EGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLG-- 359
+DT+E E E++ +A + LQ T T +S + P +
Sbjct: 293 GYDDTDESHCAEHIESRTLAIAR---------NLTQQLQTTCHTLLSNIQGVPQNIQDQA 343
Query: 360 -----MAGRVLHLTPAPA---------VSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLP 405
MAG + + A ++S+KG+ + ++L D+V+D +V+ PL
Sbjct: 344 KHMGVMAGDIYSVFRNAASFKEVSDSLLTSSKGQLQKMKESL----DDVMDYLVNNTPLN 399
Query: 406 RL--SLMEPESEFRDIDNPPAEVERREAERRAS 436
L +E ++ + AE+++ E + S
Sbjct: 400 WLVGPFYPQLTESQNAQDQGAEMDKSSQETQRS 432
>gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo
sapiens]
Length = 434
Score = 120 bits (300), Expect = 4e-27
Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 12/232 (5%)
Query: 16 EQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEKGVQSASSLAAWSMEP 75
+Q +V+ RV +P++S TC+ Y STKE++P + +VC+A EKGV++ ++ A +P
Sbjct: 21 QQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQP 80
Query: 76 VVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTISTR-------LRSAR 128
++ +L Q +A+E A RGLD LEE +P LQ P EK+ ++ K+ +S++ + SA+
Sbjct: 81 ILSKLEPQIASASEYAHRGLDKLEENLPILQQPTEKVLADTKELVSSKVSGAQEMVSSAK 140
Query: 129 NSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLALGSIEKVV 188
++++ ++ D GA +G + V + +R G++ G D LG E+
Sbjct: 141 DTVATQLSEAVDATRGAVQSGVDKTKSVVTGGVQSVMGSRLGQMVLSGVDTVLGKSEEWA 200
Query: 189 EYLLPPDKEESA----PAPGHQQAQ-KSPKAKPSLLSRVGALTNTLSRYTVQ 235
+ LP E A G A + + + S R+G+L+ L ++ +
Sbjct: 201 DNHLPLTDAELARIATSLDGFDVASVQQQRQEQSYFVRLGSLSERLRQHAYE 252
>gi|116292172 lipid storage droplet protein 5 [Homo sapiens]
Length = 463
Score = 98.6 bits (244), Expect = 1e-20
Identities = 100/401 (24%), Positives = 166/401 (41%), Gaps = 53/401 (13%)
Query: 16 EQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEKGVQSASSLAAWSMEP 75
+Q+NV+QRV+ LP+V TC Y++ K+ HPL+ S C E V ++ A +P
Sbjct: 18 DQQNVVQRVVALPLVRATCTAVCDVYSAAKDRHPLLGSACRLAENCVCGLTTRALDHAQP 77
Query: 76 VVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTISTRLRSARNSISVPI 135
++ L Q N LACRGLD LEEK+P LQ P E + + KD +
Sbjct: 78 LLEHLQPQLATMNSLACRGLDKLEEKLPFLQQPSETVVTSAKDVV--------------- 122
Query: 136 ASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLALGSIEKVVEYLLPPD 195
AS+ V+ A G W V R S D+ L E++V++ LP
Sbjct: 123 ASSVTGVVDLARRGRR--WSV-----------ELKRSVSHAVDVVLEKSEELVDHFLPMT 169
Query: 196 KEE----SAPAPGHQQAQ-KSPKAKPSLLSRVGALTNTLS----RYTVQTMARALEQGHT 246
+EE +A A G + + + + R+G+L+ + ++V + ++ +
Sbjct: 170 EEELAALAAEAEGPEVGSVEDQRRQQGYFVRLGSLSARIRHLAYEHSVGKLRQSKHRAQD 229
Query: 247 VAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTDTEGEDT 306
+ + L Q G + A + E+ W + + ++ E E
Sbjct: 230 TLAQLQETLELIDHMQCGVTPTAPACPGKVHELWGEW-----GQRPPESRRRSQAELETL 284
Query: 307 EEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGMAGRVLH 366
L T+E + + A RGL G + + ++ ++ A+ A A R
Sbjct: 285 VLSRSL-TQELQGTVEALESSVRGLPAGAQEKVAE-VRRSVDALQTAFA-----DARCFR 337
Query: 367 LTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRL 407
PA A++ +GR D +++ VV VPLP L
Sbjct: 338 DVPAAALAEGRGRVAH----AHACVDELLELVVQAVPLPWL 374
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 44.3 bits (103), Expect = 3e-04
Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 24/251 (9%)
Query: 263 WGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTDTEGE-----DTEEEEELETEEN 317
W +V + A+ + +SE + S EE+ E++ + E E D EEEE E
Sbjct: 963 WKEAVRIHALLKGKSEEELEASKSFGPGNEEEEEEEEEYEEEEEEDYDEEEEESSEAGNQ 1022
Query: 318 KFSEVAALPGPRGLLGGV--AHTLQKTLQTTISAVTWAPAAVLGMAGRVLHLTPAPAVSS 375
+ +V P + V H ++ + ++ + + A+ + L +
Sbjct: 1023 RLQQVMHAADPLEIQADVHWTHIREREEEERMAPASESSASGAPLDENDLEEDVDSEPAE 1082
Query: 376 TKGRAMSLSDALKGVTDNVVDTVVHY----------VPLPRLSLMEPESEFR---DIDNP 422
+G A D G T +D H+ + LP + E E E R D +
Sbjct: 1083 IEGEA--AEDGDPGDTGAELDDDQHWSDSPSDADRELRLPCPAEGEAELELRVSEDEEKL 1140
Query: 423 PAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPRP 482
PA + +E + +P P+ + L P S S + P PP P E + P
Sbjct: 1141 PASPKHQERGPSQATSPIRSPQESALLFIPVHS-PSTEGPQLPPVPAATQEKSPEERLFP 1199
Query: 483 GFPAVPREKPK 493
P +P+EKPK
Sbjct: 1200 E-PLLPKEKPK 1209
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 23/197 (11%)
Query: 301 TEGEDTEEEEELETEENKFSEVA--ALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVL 358
T D + E TE NK + VA ++P P A T + V AP AV
Sbjct: 448 TGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVA 507
Query: 359 GMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD 418
A P+PA ++ A+S + A + +P + + +
Sbjct: 508 AAAAPAAAAAPSPATAAATAAAVSPAAAGQ---------------IPAAASVASAAAVAP 552
Query: 419 IDNPPAEVERREAERRASGAPSAGPEPAPRLAQ---PRRSLRSAQSPGAPPGPGLEDEVA 475
A V+ A AP+ P PAP AQ P ++ +P P P
Sbjct: 553 SAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPA---PTP 609
Query: 476 TPAAPRPGFPAVPREKP 492
TPA + PA P P
Sbjct: 610 TPAVAQAEVPASPATGP 626
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 23/197 (11%)
Query: 301 TEGEDTEEEEELETEENKFSEVA--ALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVL 358
T D + E TE NK + VA ++P P A T + V AP AV
Sbjct: 857 TGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVA 916
Query: 359 GMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD 418
A P+PA ++ A+S + A + +P + + +
Sbjct: 917 AAAAPAAAAAPSPATAAATAAAVSPAAAGQ---------------IPAAASVASAAAVAP 961
Query: 419 IDNPPAEVERREAERRASGAPSAGPEPAPRLAQ---PRRSLRSAQSPGAPPGPGLEDEVA 475
A V+ A AP+ P PAP AQ P ++ +P P P
Sbjct: 962 SAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPA---PTP 1018
Query: 476 TPAAPRPGFPAVPREKP 492
TPA + PA P P
Sbjct: 1019 TPAVAQAEVPASPATGP 1035
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 41.6 bits (96), Expect = 0.002
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
Query: 338 TLQKTLQTTISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDT 397
+L +L T +S+ T AP + ++ PAP S+++ + S AL+ + + T
Sbjct: 1340 SLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPALES-SPSRSST 1398
Query: 398 VVHYVPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLR 457
PL P S+ ++ PP ++ S P P P P L
Sbjct: 1399 ATSMDPLSTEDFKPPRSQSPNLTPPPTHTPHSASDLTVSPDPLLSPTAHPLDHPPLDPLT 1458
Query: 458 SAQSPGAPPGP 468
+PG PGP
Sbjct: 1459 LGPTPGQSPGP 1469
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 39.7 bits (91), Expect = 0.007
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPR 481
P A A R A+ A +A P P P PR R+A PP P VA PA PR
Sbjct: 139 PVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQ-RAAPLAAPPPAPAAPPAVAPPAGPR 197
Query: 482 PG-FPAVPREKP 492
PAV +P
Sbjct: 198 RAPPPAVAAREP 209
Score = 33.1 bits (74), Expect = 0.63
Identities = 38/139 (27%), Positives = 51/139 (36%), Gaps = 10/139 (7%)
Query: 360 MAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHY------VPLPRLSLMEPE 413
MAG P A ++T A S S A + ++DT+ L R+ M
Sbjct: 1 MAGPPALPPPETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRR 60
Query: 414 SEFRDIDNPPAEVERREAER---RASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPG-PG 469
+ + AE+E+ +R R S S A R+ PRR P AP G P
Sbjct: 61 RHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPA 120
Query: 470 LEDEVATPAAPRPGFPAVP 488
A P P P P P
Sbjct: 121 AAAAAAPPPTPAPPPPPAP 139
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 422 PPAEVERREAERRASGAPSAGPEPAP-------RLAQPRRSLRSAQSPG-APPGPGLED- 472
PPA A+ A + P PAP A P R+ R+A + APP PG
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQP 167
Query: 473 ----EVATPAAPRPGFPAVP 488
+ A P A P PA P
Sbjct: 168 GPRAQRAAPLAAPPPAPAAP 187
Score = 30.4 bits (67), Expect = 4.1
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 422 PPAEVERREAERRASGAPSAGPEPAP----RLAQPRRSLRSAQSPGAPPGPGLEDEVATP 477
PP+ + R AP A P PAP +A P R+ A P L P
Sbjct: 159 PPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPP 218
Query: 478 AAPRPGFPAVPREKP 492
A P+ P P+ +P
Sbjct: 219 APPQQQQPPPPQPQP 233
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 38.9 bits (89), Expect = 0.012
Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 35/175 (20%)
Query: 336 AHTLQKTLQTTISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVV 395
A TLQ T+ +++ AV A TPAPA + A +L+ A T
Sbjct: 483 AVTLQDTVSDRLASEELPSTAVPTPA-----TTPAPAPAPAPAPAPALASA---ATKERT 534
Query: 396 DTVVHYVPL-PRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRR 454
++ V P P+++ PE+ P E R +R A P+ P P+++ R
Sbjct: 535 ESEVPPRPASPKVTRSPPETA------APVEDMARRTKRPAPARPTM---PPPQVSGSR- 584
Query: 455 SLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSDSFFRPSVMEPI 509
SP APP P P G P P+ P+R V S P+V P+
Sbjct: 585 -----SSPPAPPLP-----------PGSGSPGTPQALPRRLVGSSLRAPTVPPPL 623
>gi|29029597 glutamate receptor KA2 precursor [Homo sapiens]
Length = 980
Score = 38.1 bits (87), Expect = 0.020
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 436 SGAPSAGPEPAP--RLAQPRRSLRS--AQSPGAPP-GPGLEDEVATPAAPRPGFPAVPRE 490
SGA A P P R+ Q R +++ A GAPP G G+ E +P PRPG PA PRE
Sbjct: 917 SGARPAAPTPCTHVRVCQECRRIQALRASGAGAPPRGLGVPAEATSPPRPRPG-PAGPRE 975
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 37.4 bits (85), Expect = 0.034
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 429 REAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVP 488
R R S +PS P P+P R S+R+ P PPG E V PA P PA P
Sbjct: 596 RSRSRSFSSSPSPSPTPSPH----RPSIRTKGEPAPPPGKAGEKSVKKPAPP----PAPP 647
Query: 489 R 489
+
Sbjct: 648 Q 648
>gi|27734911 DAZ interacting protein 1-like [Homo sapiens]
Length = 767
Score = 37.4 bits (85), Expect = 0.034
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 9/216 (4%)
Query: 300 DTEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLG 359
DTE ED+ EEE ++++ + +AAL LL L+ TL+ + ++ A
Sbjct: 421 DTE-EDSPEEEMEDSQDEQHKVLAALRRNPTLLKHFRPILEDTLEEKLESMGIRKDAKGI 479
Query: 360 MAGRVLHLTPAPAVS-STKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD 418
+ HL V K R S +L+G V + ++ +P+ +
Sbjct: 480 SIQTLRHLESLLRVQREQKARKFSEFLSLRGKLVKEVTSRAKERQENGAAVSQPDGQ-PS 538
Query: 419 IDNPPAEVERREAERRAS----GAPSAGPEPAPRLAQPRRSLRSA--QSPGAPPGPGLED 472
+ + + + REA+ + PS EP P Q S S+ Q P PGL
Sbjct: 539 VKSQQSALVTREAQPKTRTLQVALPSTPAEPPPPTRQSHGSHGSSLTQVSAPAPHPGLHG 598
Query: 473 EVATPAAPRPGFPAVPREKPKRRVSDSFFRPSVMEP 508
+TP + PG P + D R S+ P
Sbjct: 599 PSSTPPSSGPGMSTPPFSSEEDSEGDRVQRVSLQPP 634
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 37.0 bits (84), Expect = 0.044
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 439 PSAGPEPAPRLAQPRRSLRSAQSPGAP------PGPGLEDEVATPAAPRPGFPAVPREKP 492
P G P P A P R Q PG P PG A P AP PG A + P
Sbjct: 61 PFGGSGPGPGSALPARG--HGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDP 118
Query: 493 KRRVSDSFFR-PSVMEPILGRTHYSQL 518
K+ S + + P+V+ P + + H + +
Sbjct: 119 KQPPSGTALKQPAVVYPWMKKVHVNSV 145
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.057
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 424 AEVERREAERRASGAPSAGPEPAPRLAQPRR--SLRSAQSPGAPPGPGLEDEVATPAAPR 481
AE ER AP EPAP RR SLR +P AP P A P+ +
Sbjct: 130 AEREREVRTPSGGAAPCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK 189
Query: 482 PGFPAVPREKPKRR 495
P A R++P+RR
Sbjct: 190 PALAA--RQQPQRR 201
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.057
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 424 AEVERREAERRASGAPSAGPEPAPRLAQPRR--SLRSAQSPGAPPGPGLEDEVATPAAPR 481
AE ER AP EPAP RR SLR +P AP P A P+ +
Sbjct: 130 AEREREVRTPSGGAAPCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK 189
Query: 482 PGFPAVPREKPKRR 495
P A R++P+RR
Sbjct: 190 PALAA--RQQPQRR 201
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.057
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 424 AEVERREAERRASGAPSAGPEPAPRLAQPRR--SLRSAQSPGAPPGPGLEDEVATPAAPR 481
AE ER AP EPAP RR SLR +P AP P A P+ +
Sbjct: 130 AEREREVRTPSGGAAPCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK 189
Query: 482 PGFPAVPREKPKRR 495
P A R++P+RR
Sbjct: 190 PALAA--RQQPQRR 201
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 36.2 bits (82), Expect = 0.075
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 408 SLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRL-----AQPRRSLRSAQSP 462
++M P +++D+DN + ++ G P P+P L +P R P
Sbjct: 275 AIMAPFYQWKDVDNFKLPEDDLRGIQQLYGTPDGQPQPTQPLPTVTPRRPGRPDHRPPRP 334
Query: 463 GAPPGPGLEDEVATPAAPRPGFPAVPR--EKP 492
PP PG + E P+PG P PR E+P
Sbjct: 335 PQPPPPGGKPE----RPPKPGPPVQPRATERP 362
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 35.8 bits (81), Expect = 0.098
Identities = 37/107 (34%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 428 RREAERRASGAPSAG----PEPAPRLAQPRRSLRSAQSPGAP--PGP----------GLE 471
RRE+ RR +GA S G R + RR L A S G P P P GL
Sbjct: 815 RRESGRRRAGATSQGAIRRAASRARKGESRRPL-PANSAGRPALPSPAAARSARGSWGLR 873
Query: 472 DEVATPAAPR--PGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYS 516
+ AAPR P F P +P+RR+ S P GR+ YS
Sbjct: 874 ASRPSRAAPRGPPNFQRCPAPRPRRRLGVSIVGPGRAHS-AGRSSYS 919
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 35.8 bits (81), Expect = 0.098
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 396 DTVVHYVPLPRLSLMEPE----SEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQ 451
+TV + PLP ++ + +D++ E R +G P GP+ PR AQ
Sbjct: 771 ETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQ 830
Query: 452 PRRSLRSAQSPGAPPGPGLEDEV--ATPAAPRPGFPAVPREKPKRRVSDSFFRPSVMEPI 509
+ LR Q AP G E+ P P PA P+ R+++ F P + +
Sbjct: 831 AK--LRDGQKDAAPRAAGTVKELPKGPEQVPVPD-PAREAGGPEERLAEEF--PGQSQDV 885
Query: 510 LGRTHYSQLRKK 521
G SQ RKK
Sbjct: 886 TGG---SQDRKK 894
>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
2B [Homo sapiens]
Length = 211
Score = 35.8 bits (81), Expect = 0.098
Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 20/154 (12%)
Query: 346 TISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLP 405
+I+ W L G ++ LT A S KG ++L G + + + Y +P
Sbjct: 49 SINISVWDDVGNLIQPGDIIRLTKGYA-SVFKG-CLTLYTGRGGDLQKIGEFCMVYSEVP 106
Query: 406 RLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAP 465
S PE + N +A + S ++ P P A P ++ AP
Sbjct: 107 NFSEPNPEYSTQQAPN--------KAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAP 158
Query: 466 PGPGLEDEVATPAAPRPGFPAVPREKPKRRVSDS 499
PGPG P P P P P R++ S
Sbjct: 159 PGPG--------GGPHP--PHTPSHPPSTRITRS 182
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 35.8 bits (81), Expect = 0.098
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 30/201 (14%)
Query: 291 QEEDHEDQTDTEGEDTEEEEELETEENKFSEVAA----LPGPRGLLGGVAHTLQKTLQTT 346
+E D D+ D E ED +E+ + E+ + V A LP L V+ +
Sbjct: 2178 EESDGPDEDDNENEDDDEDSQAESVLSATPSVTASPQHLPSRSSLQDPVSTDEDVRITDC 2237
Query: 347 ISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTV----VHYV 402
S V P VL A + A S + +S A + + DT+
Sbjct: 2238 FSGVHTDPMDVLPRALLTRMTVLSTAQSDYNRKTLSPGKARQRAARDENDTIPSVDTSRS 2297
Query: 403 PLPRLSLMEPESEF-----------------RDIDNPPAEVERREAERRASGAPS-AGPE 444
P ++S+ PESE + PPA E + + A+G PS A P
Sbjct: 2298 PCHQMSVDYPESEEILRSSMAGKAVAITQSPSSVRLPPAAAE--HSPQTAAGMPSVASPH 2355
Query: 445 PAPRLAQPRRSLRSAQSPGAP 465
P P+ + ++ + +PG P
Sbjct: 2356 PDPQ--EQKQQITLQPTPGLP 2374
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.8 bits (81), Expect = 0.098
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 338 TLQKTLQTTISAVTWAPAAVLGMA----GRVLHLTPAPAVSSTKGRAMSLSDALKGVTDN 393
T Q++ +T S V+ +P G G +P+PA K +S S+ KG
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVE-LSESEEDKGGKMA 474
Query: 394 VVDTVVH---YVPLPRLSLMEPESEFRDIDNPP--AEVERREAERRASGAPSAGPEPAPR 448
D+V Y + S + S D P + V+ E RR +PS P+PR
Sbjct: 475 AADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPR 534
Query: 449 LAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKPKRR 495
Q S R + P P +PA P P P P+RR
Sbjct: 535 KRQKETSPRGRRRRSPSPPPTRRRRSPSPAPP-PRRRRTPTPPPRRR 580
Score = 33.1 bits (74), Expect = 0.63
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 406 RLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRR---SLRSAQSP 462
R S P + R +P RR + P P R PRR ++ SP
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSP 606
Query: 463 GAPPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSDS 499
PP + A+P P P A P PKRRVS S
Sbjct: 607 SPPP----KRRTASPPPP-PKRRASPSPPPKRRVSHS 638
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 404 LPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS-- 461
L + + + + RD + + E+RE R S P P R + RR + + S
Sbjct: 141 LASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRS 200
Query: 462 -----PGAPPGPGLEDEVATPAAPRP 482
P P E + TP P P
Sbjct: 201 PRHRTKSRSPSPAPEKKEKTPELPEP 226
Score = 29.3 bits (64), Expect = 9.2
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 403 PLPRLSLMEPESEFRDIDNP-PAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
P+ R+S + + +P P V R + R SG+P + P P +S QS
Sbjct: 720 PIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQS----QS 775
Query: 462 PGAPPGPGLEDEVATPAAPRPGFP 485
P P + + A P P P
Sbjct: 776 PSTNWSPAVPVKKAKSPTPSPSPP 799
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.4 bits (80), Expect = 0.13
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 403 PLPRLSLME--PESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRR------ 454
P PR L+ P + PP A A+ A +AGPEPAP A P +
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAP--AGPAKPAGPAA 165
Query: 455 -SLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVP 488
+ R+ PG PGPG P PG PA P
Sbjct: 166 LAARAGPGPGPGPGPG--------PGPGPGKPAGP 192
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/86 (37%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 422 PPAEVERREAERRASGAPSAGPE-PAPRLAQPRRSLRSAQSP----GAP------PGPGL 470
PPA +G P+A P P P AQ S +A +P G P PGPG
Sbjct: 274 PPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG- 332
Query: 471 EDEVATPAAPRPGFPAVPREKPKRRV 496
A AAP PG A E PKR V
Sbjct: 333 ----AAAAAPAPGVKA---ESPKRVV 351
Score = 31.2 bits (69), Expect = 2.4
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 397 TVVHYVPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSL 456
++V+ P L L +P + I PP V A+ +P A P PA A P
Sbjct: 216 SLVNNGPAALLPLPKPAAPGTVIQTPPF-VGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Query: 457 RSAQSPGAPPGPGLEDEVATPAAPRP 482
+ + PPG A PA P P
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPP 300
Score = 30.0 bits (66), Expect = 5.4
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 435 ASGAPSAGPEPAPRLAQPRRSLRSAQSPGAP--PGPGLEDEVATPAAPRPGFPAVPREKP 492
A GAP A PEP P + R+ G P PGP PA P P PA P
Sbjct: 79 AEGAPGAAPEPPP-------AGRARPGGGGPQRPGPPSPRRPLVPAGPAP--PAAKLRPP 129
Score = 30.0 bits (66), Expect = 5.4
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 423 PAEVERREAERRASGAPSAG-----PEPAPRLAQPRRSLRSAQSPGAPP-----GPGLED 472
PA V + A+ AP+ G P+ + A P +A P + GP ++
Sbjct: 322 PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQG 381
Query: 473 EVATPAAPRPGFPAVPREKPK 493
+ +PAA P P P PK
Sbjct: 382 ALPSPAAVPPPAPGTPTGLPK 402
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 35.4 bits (80), Expect = 0.13
Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 29/212 (13%)
Query: 292 EEDHEDQTDTEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTIS--- 348
E++ E + D+E + + EE ETEENK E+ R + T +K ++ IS
Sbjct: 813 EKNSEKEQDSEVSEDTKSEEKETEENK--ELTDTCKER-----ESDTGKKKVEHEISEGN 865
Query: 349 AVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGV---------TDNVVDTVV 399
T A AA+ A + HL A+ + +K + + ++D
Sbjct: 866 VATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREK 925
Query: 400 HYVPLPRLSLMEPESEFRDIDNPPAEVE-RREAERRASG-------APSAGPEPAPRLAQ 451
+ R L+ F AE+ R++ E++ G S GP AP A
Sbjct: 926 EALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQHGQNPQQAHQHSGGPGLAPLGAA 985
Query: 452 PRRSLRSAQSPGAPPGPGLEDEVATPAAPRPG 483
+ Q P PP P + ++ P P+PG
Sbjct: 986 GHPGMMPHQQP--PPYPLMHHQMPPPHPPQPG 1015
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 35.4 bits (80), Expect = 0.13
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP- 480
PP V + + A G P P P+ P +++ PG P PG + +V P P
Sbjct: 627 PPGPVGEKGIQGVA-GNPGQPGIPGPK-GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPG 684
Query: 481 ---RPGFPAVPREK 491
+PG P +P K
Sbjct: 685 LPGQPGLPGIPGSK 698
Score = 30.0 bits (66), Expect = 5.4
Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 402 VPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
+ LP L + E F I PP GA GP P R
Sbjct: 361 IGLPGLPGEKGERGFPGIQGPPGLPG-------PPGAAVMGPPGPPGFPGERGQKGDEGP 413
Query: 462 PGA--PPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSD 498
PG P PGL+ + P P P PA P P + +
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 35.4 bits (80), Expect = 0.13
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP- 480
PP V + + A G P P P+ P +++ PG P PG + +V P P
Sbjct: 627 PPGPVGEKGIQGVA-GNPGQPGIPGPK-GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPG 684
Query: 481 ---RPGFPAVPREK 491
+PG P +P K
Sbjct: 685 LPGQPGLPGIPGSK 698
Score = 30.0 bits (66), Expect = 5.4
Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 402 VPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
+ LP L + E F I PP GA GP P R
Sbjct: 361 IGLPGLPGEKGERGFPGIQGPPGLPG-------PPGAAVMGPPGPPGFPGERGQKGDEGP 413
Query: 462 PGA--PPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSD 498
PG P PGL+ + P P P PA P P + +
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 35.4 bits (80), Expect = 0.13
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP- 480
PP V + + A G P P P+ P +++ PG P PG + +V P P
Sbjct: 627 PPGPVGEKGIQGVA-GNPGQPGIPGPK-GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPG 684
Query: 481 ---RPGFPAVPREK 491
+PG P +P K
Sbjct: 685 LPGQPGLPGIPGSK 698
Score = 30.0 bits (66), Expect = 5.4
Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 402 VPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
+ LP L + E F I PP GA GP P R
Sbjct: 361 IGLPGLPGEKGERGFPGIQGPPGLPG-------PPGAAVMGPPGPPGFPGERGQKGDEGP 413
Query: 462 PGA--PPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSD 498
PG P PGL+ + P P P PA P P + +
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452
>gi|26190608 synaptojanin 2 [Homo sapiens]
Length = 1496
Score = 35.4 bits (80), Expect = 0.13
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 438 APSAGPEPAPRLAQP-----RRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKP 492
AP P P PR QP R S R S APPG G A+ P P VP+ P
Sbjct: 1280 APRVPPVPKPRTFQPGKAAERPSHRKPASDEAPPGAG-----ASVPPPLEAPPLVPKVPP 1334
Query: 493 KRRVS 497
+R+ S
Sbjct: 1335 RRKKS 1339
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,999,194
Number of Sequences: 37866
Number of extensions: 1176340
Number of successful extensions: 11879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 544
Number of HSP's that attempted gapping in prelim test: 9211
Number of HSP's gapped (non-prelim): 2769
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.