Guide to the Human Genome
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Search of human proteins with 223718196

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223718196 perilipin [Homo sapiens]
         (522 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223718196 perilipin [Homo sapiens]                                1026   0.0  
gi|223718203 perilipin [Homo sapiens]                                1026   0.0  
gi|34577059 adipose differentiation-related protein [Homo sapiens]    130   3e-30
gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo...   120   4e-27
gi|116292172 lipid storage droplet protein 5 [Homo sapiens]            99   1e-20
gi|209862789 microtubule associated monoxygenase, calponin and L...    44   3e-04
gi|19111150 angiomotin isoform 2 [Homo sapiens]                        43   6e-04
gi|166064029 angiomotin isoform 1 [Homo sapiens]                       43   6e-04
gi|222352122 hypothetical protein LOC284297 [Homo sapiens]             42   0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     40   0.007
gi|85815829 SH3-domain binding protein 1 [Homo sapiens]                39   0.012
gi|29029597 glutamate receptor KA2 precursor [Homo sapiens]            38   0.020
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         37   0.034
gi|27734911 DAZ interacting protein 1-like [Homo sapiens]              37   0.034
gi|23397672 homeobox D4 [Homo sapiens]                                 37   0.044
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]            37   0.057
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]            37   0.057
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]            37   0.057
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]    36   0.075
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ...    36   0.098
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ...    36   0.098
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain...    36   0.098
gi|116805342 human immunodeficiency virus type I enhancer bindin...    36   0.098
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         36   0.098
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    35   0.13 
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r...    35   0.13 
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    35   0.13 
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    35   0.13 
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    35   0.13 
gi|26190608 synaptojanin 2 [Homo sapiens]                              35   0.13 

>gi|223718196 perilipin [Homo sapiens]
          Length = 522

 Score = 1026 bits (2653), Expect = 0.0
 Identities = 522/522 (100%), Positives = 522/522 (100%)

Query: 1   MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60
           MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK
Sbjct: 1   MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60

Query: 61  GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120
           GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI
Sbjct: 61  GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120

Query: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180
           STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA
Sbjct: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180

Query: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240
           LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA
Sbjct: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240

Query: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300
           LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD
Sbjct: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300

Query: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360
           TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM
Sbjct: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360

Query: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420
           AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID
Sbjct: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420

Query: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480
           NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP
Sbjct: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480

Query: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522
           RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS
Sbjct: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522


>gi|223718203 perilipin [Homo sapiens]
          Length = 522

 Score = 1026 bits (2653), Expect = 0.0
 Identities = 522/522 (100%), Positives = 522/522 (100%)

Query: 1   MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60
           MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK
Sbjct: 1   MAVNKGLTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEK 60

Query: 61  GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120
           GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI
Sbjct: 61  GVQSASSLAAWSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTI 120

Query: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180
           STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA
Sbjct: 121 STRLRSARNSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLA 180

Query: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240
           LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA
Sbjct: 181 LGSIEKVVEYLLPPDKEESAPAPGHQQAQKSPKAKPSLLSRVGALTNTLSRYTVQTMARA 240

Query: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300
           LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD
Sbjct: 241 LEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTD 300

Query: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360
           TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM
Sbjct: 301 TEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGM 360

Query: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420
           AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID
Sbjct: 361 AGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRDID 420

Query: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480
           NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP
Sbjct: 421 NPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP 480

Query: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522
           RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS
Sbjct: 481 RPGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYSQLRKKS 522


>gi|34577059 adipose differentiation-related protein [Homo sapiens]
          Length = 437

 Score =  130 bits (327), Expect = 3e-30
 Identities = 117/453 (25%), Positives = 199/453 (43%), Gaps = 62/453 (13%)

Query: 17  QENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEKGVQSASSLAAWSMEPV 76
           Q +V+ RV+ LP+VS T +     Y STK+ +P + SVC   E GV++ +S+A  S  P+
Sbjct: 9   QPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKSVCEMAENGVKTITSVAMTSALPI 68

Query: 77  VRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASE-------LKDTISTRLRSARN 129
           +++L  Q   AN  AC+GLD +EE++P L  P  +I +         KD ++T +  A++
Sbjct: 69  IQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQIVANAKGAVTGAKDAVTTTVTGAKD 128

Query: 130 SISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLALGSIEKVVE 189
           S++  I    DK  GA     E    V   +      +R  +L S G + AL   E +VE
Sbjct: 129 SVASTITGVMDKTKGAVTGSVEKTKSVVSGSINTVLGSRMMQLVSSGVENALTKSELLVE 188

Query: 190 YLLPPDKE----ESAPAPGHQQAQKSPKAKPSLLSRVGALTNTL-SRYTVQTMAR---AL 241
             LP  +E    E+    G    Q     KPS   R+G+L+  L SR   Q ++R   A 
Sbjct: 189 QYLPLTEEELEKEAKKVEGFDLVQ-----KPSYYVRLGSLSTKLHSRAYQQALSRVKEAK 243

Query: 242 EQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTDT 301
           ++       +   V L   A+     A Q +   + ++ + W+           E +   
Sbjct: 244 QKSQQTISQLHSTVHLIEFARKNVYSANQKIQDAQDKLYLSWV-----------EWKRSI 292

Query: 302 EGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLG-- 359
             +DT+E    E  E++   +A           +   LQ T  T +S +   P  +    
Sbjct: 293 GYDDTDESHCAEHIESRTLAIAR---------NLTQQLQTTCHTLLSNIQGVPQNIQDQA 343

Query: 360 -----MAGRVLHLTPAPA---------VSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLP 405
                MAG +  +    A         ++S+KG+   + ++L    D+V+D +V+  PL 
Sbjct: 344 KHMGVMAGDIYSVFRNAASFKEVSDSLLTSSKGQLQKMKESL----DDVMDYLVNNTPLN 399

Query: 406 RL--SLMEPESEFRDIDNPPAEVERREAERRAS 436
            L        +E ++  +  AE+++   E + S
Sbjct: 400 WLVGPFYPQLTESQNAQDQGAEMDKSSQETQRS 432


>gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo
           sapiens]
          Length = 434

 Score =  120 bits (300), Expect = 4e-27
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 16  EQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEKGVQSASSLAAWSMEP 75
           +Q +V+ RV  +P++S TC+     Y STKE++P + +VC+A EKGV++ ++ A    +P
Sbjct: 21  QQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQP 80

Query: 76  VVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTISTR-------LRSAR 128
           ++ +L  Q  +A+E A RGLD LEE +P LQ P EK+ ++ K+ +S++       + SA+
Sbjct: 81  ILSKLEPQIASASEYAHRGLDKLEENLPILQQPTEKVLADTKELVSSKVSGAQEMVSSAK 140

Query: 129 NSISVPIASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLALGSIEKVV 188
           ++++  ++   D   GA  +G +    V     +    +R G++   G D  LG  E+  
Sbjct: 141 DTVATQLSEAVDATRGAVQSGVDKTKSVVTGGVQSVMGSRLGQMVLSGVDTVLGKSEEWA 200

Query: 189 EYLLPPDKEESA----PAPGHQQAQ-KSPKAKPSLLSRVGALTNTLSRYTVQ 235
           +  LP    E A       G   A  +  + + S   R+G+L+  L ++  +
Sbjct: 201 DNHLPLTDAELARIATSLDGFDVASVQQQRQEQSYFVRLGSLSERLRQHAYE 252


>gi|116292172 lipid storage droplet protein 5 [Homo sapiens]
          Length = 463

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 100/401 (24%), Positives = 166/401 (41%), Gaps = 53/401 (13%)

Query: 16  EQENVLQRVLQLPVVSGTCECFQKTYTSTKEAHPLVASVCNAYEKGVQSASSLAAWSMEP 75
           +Q+NV+QRV+ LP+V  TC      Y++ K+ HPL+ S C   E  V   ++ A    +P
Sbjct: 18  DQQNVVQRVVALPLVRATCTAVCDVYSAAKDRHPLLGSACRLAENCVCGLTTRALDHAQP 77

Query: 76  VVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKDTISTRLRSARNSISVPI 135
           ++  L  Q    N LACRGLD LEEK+P LQ P E + +  KD +               
Sbjct: 78  LLEHLQPQLATMNSLACRGLDKLEEKLPFLQQPSETVVTSAKDVV--------------- 122

Query: 136 ASTSDKVLGAALAGCELAWGVARDTAEFAANTRAGRLASGGADLALGSIEKVVEYLLPPD 195
           AS+   V+  A  G    W V              R  S   D+ L   E++V++ LP  
Sbjct: 123 ASSVTGVVDLARRGRR--WSV-----------ELKRSVSHAVDVVLEKSEELVDHFLPMT 169

Query: 196 KEE----SAPAPGHQQAQ-KSPKAKPSLLSRVGALTNTLS----RYTVQTMARALEQGHT 246
           +EE    +A A G +    +  + +     R+G+L+  +      ++V  + ++  +   
Sbjct: 170 EEELAALAAEAEGPEVGSVEDQRRQQGYFVRLGSLSARIRHLAYEHSVGKLRQSKHRAQD 229

Query: 247 VAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTDTEGEDT 306
               +   + L    Q G +    A   +  E+   W       +  +   ++  E E  
Sbjct: 230 TLAQLQETLELIDHMQCGVTPTAPACPGKVHELWGEW-----GQRPPESRRRSQAELETL 284

Query: 307 EEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLGMAGRVLH 366
                L T+E + +  A     RGL  G    + + ++ ++ A+  A A       R   
Sbjct: 285 VLSRSL-TQELQGTVEALESSVRGLPAGAQEKVAE-VRRSVDALQTAFA-----DARCFR 337

Query: 367 LTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRL 407
             PA A++  +GR            D +++ VV  VPLP L
Sbjct: 338 DVPAAALAEGRGRVAH----AHACVDELLELVVQAVPLPWL 374


>gi|209862789 microtubule associated monoxygenase, calponin and LIM
            domain containing 3 isoform 1 [Homo sapiens]
          Length = 2002

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 24/251 (9%)

Query: 263  WGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHEDQTDTEGE-----DTEEEEELETEEN 317
            W  +V + A+ + +SE  +    S     EE+ E++ + E E     D EEEE  E    
Sbjct: 963  WKEAVRIHALLKGKSEEELEASKSFGPGNEEEEEEEEEYEEEEEEDYDEEEEESSEAGNQ 1022

Query: 318  KFSEVAALPGPRGLLGGV--AHTLQKTLQTTISAVTWAPAAVLGMAGRVLHLTPAPAVSS 375
            +  +V     P  +   V   H  ++  +  ++  + + A+   +    L        + 
Sbjct: 1023 RLQQVMHAADPLEIQADVHWTHIREREEEERMAPASESSASGAPLDENDLEEDVDSEPAE 1082

Query: 376  TKGRAMSLSDALKGVTDNVVDTVVHY----------VPLPRLSLMEPESEFR---DIDNP 422
             +G A    D   G T   +D   H+          + LP  +  E E E R   D +  
Sbjct: 1083 IEGEA--AEDGDPGDTGAELDDDQHWSDSPSDADRELRLPCPAEGEAELELRVSEDEEKL 1140

Query: 423  PAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPRP 482
            PA  + +E     + +P   P+ +  L  P  S  S + P  PP P    E +      P
Sbjct: 1141 PASPKHQERGPSQATSPIRSPQESALLFIPVHS-PSTEGPQLPPVPAATQEKSPEERLFP 1199

Query: 483  GFPAVPREKPK 493
              P +P+EKPK
Sbjct: 1200 E-PLLPKEKPK 1209


>gi|19111150 angiomotin isoform 2 [Homo sapiens]
          Length = 675

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 301 TEGEDTEEEEELETEENKFSEVA--ALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVL 358
           T   D   + E  TE NK + VA  ++P P       A         T + V  AP AV 
Sbjct: 448 TGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVA 507

Query: 359 GMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD 418
             A       P+PA ++    A+S + A +               +P  + +   +    
Sbjct: 508 AAAAPAAAAAPSPATAAATAAAVSPAAAGQ---------------IPAAASVASAAAVAP 552

Query: 419 IDNPPAEVERREAERRASGAPSAGPEPAPRLAQ---PRRSLRSAQSPGAPPGPGLEDEVA 475
                A V+   A      AP+  P PAP  AQ   P ++     +P   P P       
Sbjct: 553 SAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPA---PTP 609

Query: 476 TPAAPRPGFPAVPREKP 492
           TPA  +   PA P   P
Sbjct: 610 TPAVAQAEVPASPATGP 626


>gi|166064029 angiomotin isoform 1 [Homo sapiens]
          Length = 1084

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 301  TEGEDTEEEEELETEENKFSEVA--ALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVL 358
            T   D   + E  TE NK + VA  ++P P       A         T + V  AP AV 
Sbjct: 857  TGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVA 916

Query: 359  GMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD 418
              A       P+PA ++    A+S + A +               +P  + +   +    
Sbjct: 917  AAAAPAAAAAPSPATAAATAAAVSPAAAGQ---------------IPAAASVASAAAVAP 961

Query: 419  IDNPPAEVERREAERRASGAPSAGPEPAPRLAQ---PRRSLRSAQSPGAPPGPGLEDEVA 475
                 A V+   A      AP+  P PAP  AQ   P ++     +P   P P       
Sbjct: 962  SAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPA---PTP 1018

Query: 476  TPAAPRPGFPAVPREKP 492
            TPA  +   PA P   P
Sbjct: 1019 TPAVAQAEVPASPATGP 1035


>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
          Length = 1573

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 1/131 (0%)

Query: 338  TLQKTLQTTISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDT 397
            +L  +L T +S+ T AP     +  ++    PAP  S+++   +  S AL+  + +   T
Sbjct: 1340 SLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPALES-SPSRSST 1398

Query: 398  VVHYVPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLR 457
                 PL       P S+  ++  PP       ++   S  P   P   P    P   L 
Sbjct: 1399 ATSMDPLSTEDFKPPRSQSPNLTPPPTHTPHSASDLTVSPDPLLSPTAHPLDHPPLDPLT 1458

Query: 458  SAQSPGAPPGP 468
               +PG  PGP
Sbjct: 1459 LGPTPGQSPGP 1469


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPR 481
           P A      A R A+ A +A P P P    PR   R+A     PP P     VA PA PR
Sbjct: 139 PVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQ-RAAPLAAPPPAPAAPPAVAPPAGPR 197

Query: 482 PG-FPAVPREKP 492
               PAV   +P
Sbjct: 198 RAPPPAVAAREP 209



 Score = 33.1 bits (74), Expect = 0.63
 Identities = 38/139 (27%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 360 MAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHY------VPLPRLSLMEPE 413
           MAG      P  A ++T   A S S A     + ++DT+           L R+  M   
Sbjct: 1   MAGPPALPPPETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRR 60

Query: 414 SEFRDIDNPPAEVERREAER---RASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPG-PG 469
               + +   AE+E+   +R   R S   S     A R+  PRR       P AP G P 
Sbjct: 61  RHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPA 120

Query: 470 LEDEVATPAAPRPGFPAVP 488
                A P  P P  P  P
Sbjct: 121 AAAAAAPPPTPAPPPPPAP 139



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 422 PPAEVERREAERRASGAPSAGPEPAP-------RLAQPRRSLRSAQSPG-APPGPGLED- 472
           PPA          A+ A +  P PAP         A P R+ R+A +   APP PG    
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQP 167

Query: 473 ----EVATPAAPRPGFPAVP 488
               + A P A  P  PA P
Sbjct: 168 GPRAQRAAPLAAPPPAPAAP 187



 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 422 PPAEVERREAERRASGAPSAGPEPAP----RLAQPRRSLRSAQSPGAPPGPGLEDEVATP 477
           PP+    +   R    AP A P PAP     +A P    R+     A   P L      P
Sbjct: 159 PPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPP 218

Query: 478 AAPRPGFPAVPREKP 492
           A P+   P  P+ +P
Sbjct: 219 APPQQQQPPPPQPQP 233


>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
          Length = 701

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 35/175 (20%)

Query: 336 AHTLQKTLQTTISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVV 395
           A TLQ T+   +++      AV   A      TPAPA +     A +L+ A    T    
Sbjct: 483 AVTLQDTVSDRLASEELPSTAVPTPA-----TTPAPAPAPAPAPAPALASA---ATKERT 534

Query: 396 DTVVHYVPL-PRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRR 454
           ++ V   P  P+++   PE+        P E   R  +R A   P+    P P+++  R 
Sbjct: 535 ESEVPPRPASPKVTRSPPETA------APVEDMARRTKRPAPARPTM---PPPQVSGSR- 584

Query: 455 SLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSDSFFRPSVMEPI 509
                 SP APP P           P  G P  P+  P+R V  S   P+V  P+
Sbjct: 585 -----SSPPAPPLP-----------PGSGSPGTPQALPRRLVGSSLRAPTVPPPL 623


>gi|29029597 glutamate receptor KA2 precursor [Homo sapiens]
          Length = 980

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 436 SGAPSAGPEPAP--RLAQPRRSLRS--AQSPGAPP-GPGLEDEVATPAAPRPGFPAVPRE 490
           SGA  A P P    R+ Q  R +++  A   GAPP G G+  E  +P  PRPG PA PRE
Sbjct: 917 SGARPAAPTPCTHVRVCQECRRIQALRASGAGAPPRGLGVPAEATSPPRPRPG-PAGPRE 975


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 429 REAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVP 488
           R   R  S +PS  P P+P     R S+R+   P  PPG   E  V  PA P    PA P
Sbjct: 596 RSRSRSFSSSPSPSPTPSPH----RPSIRTKGEPAPPPGKAGEKSVKKPAPP----PAPP 647

Query: 489 R 489
           +
Sbjct: 648 Q 648


>gi|27734911 DAZ interacting protein 1-like [Homo sapiens]
          Length = 767

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 9/216 (4%)

Query: 300 DTEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTISAVTWAPAAVLG 359
           DTE ED+ EEE  ++++ +   +AAL     LL      L+ TL+  + ++     A   
Sbjct: 421 DTE-EDSPEEEMEDSQDEQHKVLAALRRNPTLLKHFRPILEDTLEEKLESMGIRKDAKGI 479

Query: 360 MAGRVLHLTPAPAVS-STKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD 418
               + HL     V    K R  S   +L+G     V +          ++ +P+ +   
Sbjct: 480 SIQTLRHLESLLRVQREQKARKFSEFLSLRGKLVKEVTSRAKERQENGAAVSQPDGQ-PS 538

Query: 419 IDNPPAEVERREAERRAS----GAPSAGPEPAPRLAQPRRSLRSA--QSPGAPPGPGLED 472
           + +  + +  REA+ +        PS   EP P   Q   S  S+  Q     P PGL  
Sbjct: 539 VKSQQSALVTREAQPKTRTLQVALPSTPAEPPPPTRQSHGSHGSSLTQVSAPAPHPGLHG 598

Query: 473 EVATPAAPRPGFPAVPREKPKRRVSDSFFRPSVMEP 508
             +TP +  PG    P    +    D   R S+  P
Sbjct: 599 PSSTPPSSGPGMSTPPFSSEEDSEGDRVQRVSLQPP 634


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 439 PSAGPEPAPRLAQPRRSLRSAQSPGAP------PGPGLEDEVATPAAPRPGFPAVPREKP 492
           P  G  P P  A P R     Q PG P      PG       A P AP PG  A  +  P
Sbjct: 61  PFGGSGPGPGSALPARG--HGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDP 118

Query: 493 KRRVSDSFFR-PSVMEPILGRTHYSQL 518
           K+  S +  + P+V+ P + + H + +
Sbjct: 119 KQPPSGTALKQPAVVYPWMKKVHVNSV 145


>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 435

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 424 AEVERREAERRASGAPSAGPEPAPRLAQPRR--SLRSAQSPGAPPGPGLEDEVATPAAPR 481
           AE ER         AP    EPAP     RR  SLR   +P AP  P      A P+  +
Sbjct: 130 AEREREVRTPSGGAAPCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK 189

Query: 482 PGFPAVPREKPKRR 495
           P   A  R++P+RR
Sbjct: 190 PALAA--RQQPQRR 201


>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 435

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 424 AEVERREAERRASGAPSAGPEPAPRLAQPRR--SLRSAQSPGAPPGPGLEDEVATPAAPR 481
           AE ER         AP    EPAP     RR  SLR   +P AP  P      A P+  +
Sbjct: 130 AEREREVRTPSGGAAPCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK 189

Query: 482 PGFPAVPREKPKRR 495
           P   A  R++P+RR
Sbjct: 190 PALAA--RQQPQRR 201


>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 435

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 424 AEVERREAERRASGAPSAGPEPAPRLAQPRR--SLRSAQSPGAPPGPGLEDEVATPAAPR 481
           AE ER         AP    EPAP     RR  SLR   +P AP  P      A P+  +
Sbjct: 130 AEREREVRTPSGGAAPCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSK 189

Query: 482 PGFPAVPREKPKRR 495
           P   A  R++P+RR
Sbjct: 190 PALAA--RQQPQRR 201


>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
          Length = 669

 Score = 36.2 bits (82), Expect = 0.075
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 408 SLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRL-----AQPRRSLRSAQSP 462
           ++M P  +++D+DN     +     ++  G P   P+P   L      +P R       P
Sbjct: 275 AIMAPFYQWKDVDNFKLPEDDLRGIQQLYGTPDGQPQPTQPLPTVTPRRPGRPDHRPPRP 334

Query: 463 GAPPGPGLEDEVATPAAPRPGFPAVPR--EKP 492
             PP PG + E      P+PG P  PR  E+P
Sbjct: 335 PQPPPPGGKPE----RPPKPGPPVQPRATERP 362


>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
           sapiens]
          Length = 935

 Score = 35.8 bits (81), Expect = 0.098
 Identities = 37/107 (34%), Positives = 45/107 (42%), Gaps = 20/107 (18%)

Query: 428 RREAERRASGAPSAG----PEPAPRLAQPRRSLRSAQSPGAP--PGP----------GLE 471
           RRE+ RR +GA S G         R  + RR L  A S G P  P P          GL 
Sbjct: 815 RRESGRRRAGATSQGAIRRAASRARKGESRRPL-PANSAGRPALPSPAAARSARGSWGLR 873

Query: 472 DEVATPAAPR--PGFPAVPREKPKRRVSDSFFRPSVMEPILGRTHYS 516
               + AAPR  P F   P  +P+RR+  S   P       GR+ YS
Sbjct: 874 ASRPSRAAPRGPPNFQRCPAPRPRRRLGVSIVGPGRAHS-AGRSSYS 919


>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
           sapiens]
          Length = 1119

 Score = 35.8 bits (81), Expect = 0.098
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 396 DTVVHYVPLPRLSLMEPE----SEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQ 451
           +TV +  PLP   ++       +  +D++    E       R  +G P  GP+  PR AQ
Sbjct: 771 ETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQ 830

Query: 452 PRRSLRSAQSPGAPPGPGLEDEV--ATPAAPRPGFPAVPREKPKRRVSDSFFRPSVMEPI 509
            +  LR  Q   AP   G   E+       P P  PA     P+ R+++ F  P   + +
Sbjct: 831 AK--LRDGQKDAAPRAAGTVKELPKGPEQVPVPD-PAREAGGPEERLAEEF--PGQSQDV 885

Query: 510 LGRTHYSQLRKK 521
            G    SQ RKK
Sbjct: 886 TGG---SQDRKK 894


>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
           2B [Homo sapiens]
          Length = 211

 Score = 35.8 bits (81), Expect = 0.098
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 346 TISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLP 405
           +I+   W     L   G ++ LT   A S  KG  ++L     G    + +  + Y  +P
Sbjct: 49  SINISVWDDVGNLIQPGDIIRLTKGYA-SVFKG-CLTLYTGRGGDLQKIGEFCMVYSEVP 106

Query: 406 RLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAP 465
             S   PE   +   N        +A +  S   ++ P   P  A P    ++     AP
Sbjct: 107 NFSEPNPEYSTQQAPN--------KAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAP 158

Query: 466 PGPGLEDEVATPAAPRPGFPAVPREKPKRRVSDS 499
           PGPG          P P  P  P   P  R++ S
Sbjct: 159 PGPG--------GGPHP--PHTPSHPPSTRITRS 182


>gi|116805342 human immunodeficiency virus type I enhancer binding
            protein 1 [Homo sapiens]
          Length = 2718

 Score = 35.8 bits (81), Expect = 0.098
 Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 30/201 (14%)

Query: 291  QEEDHEDQTDTEGEDTEEEEELETEENKFSEVAA----LPGPRGLLGGVAHTLQKTLQTT 346
            +E D  D+ D E ED +E+ + E+  +    V A    LP    L   V+      +   
Sbjct: 2178 EESDGPDEDDNENEDDDEDSQAESVLSATPSVTASPQHLPSRSSLQDPVSTDEDVRITDC 2237

Query: 347  ISAVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGVTDNVVDTV----VHYV 402
             S V   P  VL  A        + A S    + +S   A +    +  DT+        
Sbjct: 2238 FSGVHTDPMDVLPRALLTRMTVLSTAQSDYNRKTLSPGKARQRAARDENDTIPSVDTSRS 2297

Query: 403  PLPRLSLMEPESEF-----------------RDIDNPPAEVERREAERRASGAPS-AGPE 444
            P  ++S+  PESE                    +  PPA  E   + + A+G PS A P 
Sbjct: 2298 PCHQMSVDYPESEEILRSSMAGKAVAITQSPSSVRLPPAAAE--HSPQTAAGMPSVASPH 2355

Query: 445  PAPRLAQPRRSLRSAQSPGAP 465
            P P+  + ++ +    +PG P
Sbjct: 2356 PDPQ--EQKQQITLQPTPGLP 2374


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 35.8 bits (81), Expect = 0.098
 Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 338 TLQKTLQTTISAVTWAPAAVLGMA----GRVLHLTPAPAVSSTKGRAMSLSDALKGVTDN 393
           T Q++ +T  S V+ +P    G      G     +P+PA    K   +S S+  KG    
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVE-LSESEEDKGGKMA 474

Query: 394 VVDTVVH---YVPLPRLSLMEPESEFRDIDNPP--AEVERREAERRASGAPSAGPEPAPR 448
             D+V     Y    + S  +  S     D  P  + V+  E  RR   +PS    P+PR
Sbjct: 475 AADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPR 534

Query: 449 LAQPRRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKPKRR 495
             Q   S R  +     P P       +PA P P     P   P+RR
Sbjct: 535 KRQKETSPRGRRRRSPSPPPTRRRRSPSPAPP-PRRRRTPTPPPRRR 580



 Score = 33.1 bits (74), Expect = 0.63
 Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 406 RLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRR---SLRSAQSP 462
           R S   P +  R   +P     RR          +  P P  R   PRR    ++   SP
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSP 606

Query: 463 GAPPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSDS 499
             PP    +   A+P  P P   A P   PKRRVS S
Sbjct: 607 SPPP----KRRTASPPPP-PKRRASPSPPPKRRVSHS 638



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 404 LPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS-- 461
           L  +   + + + RD +   +  E+RE  R      S  P P  R +  RR  + + S  
Sbjct: 141 LASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRS 200

Query: 462 -----PGAPPGPGLEDEVATPAAPRP 482
                    P P  E +  TP  P P
Sbjct: 201 PRHRTKSRSPSPAPEKKEKTPELPEP 226



 Score = 29.3 bits (64), Expect = 9.2
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 403 PLPRLSLMEPESEFRDIDNP-PAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
           P+ R+S      + +   +P P  V R  + R  SG+P    +  P    P +S    QS
Sbjct: 720 PIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQS----QS 775

Query: 462 PGAPPGPGLEDEVATPAAPRPGFP 485
           P     P +  + A    P P  P
Sbjct: 776 PSTNWSPAVPVKKAKSPTPSPSPP 799


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 403 PLPRLSLME--PESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRR------ 454
           P PR  L+   P      +  PP       A   A+ A +AGPEPAP  A P +      
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAP--AGPAKPAGPAA 165

Query: 455 -SLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVP 488
            + R+   PG  PGPG          P PG PA P
Sbjct: 166 LAARAGPGPGPGPGPG--------PGPGPGKPAGP 192



 Score = 35.0 bits (79), Expect = 0.17
 Identities = 32/86 (37%), Positives = 36/86 (41%), Gaps = 19/86 (22%)

Query: 422 PPAEVERREAERRASGAPSAGPE-PAPRLAQPRRSLRSAQSP----GAP------PGPGL 470
           PPA           +G P+A P  P P  AQ   S  +A +P    G P      PGPG 
Sbjct: 274 PPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG- 332

Query: 471 EDEVATPAAPRPGFPAVPREKPKRRV 496
               A  AAP PG  A   E PKR V
Sbjct: 333 ----AAAAAPAPGVKA---ESPKRVV 351



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 397 TVVHYVPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSL 456
           ++V+  P   L L +P +    I  PP  V        A+ +P A P PA   A P    
Sbjct: 216 SLVNNGPAALLPLPKPAAPGTVIQTPPF-VGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274

Query: 457 RSAQSPGAPPGPGLEDEVATPAAPRP 482
            +  +   PPG       A PA P P
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPP 300



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 435 ASGAPSAGPEPAPRLAQPRRSLRSAQSPGAP--PGPGLEDEVATPAAPRPGFPAVPREKP 492
           A GAP A PEP P       + R+    G P  PGP        PA P P  PA     P
Sbjct: 79  AEGAPGAAPEPPP-------AGRARPGGGGPQRPGPPSPRRPLVPAGPAP--PAAKLRPP 129



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 423 PAEVERREAERRASGAPSAG-----PEPAPRLAQPRRSLRSAQSPGAPP-----GPGLED 472
           PA V  +     A+ AP+ G     P+   + A P     +A  P +       GP ++ 
Sbjct: 322 PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQG 381

Query: 473 EVATPAAPRPGFPAVPREKPK 493
            + +PAA  P  P  P   PK
Sbjct: 382 ALPSPAAVPPPAPGTPTGLPK 402


>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin c1 [Homo sapiens]
          Length = 1105

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 29/212 (13%)

Query: 292  EEDHEDQTDTEGEDTEEEEELETEENKFSEVAALPGPRGLLGGVAHTLQKTLQTTIS--- 348
            E++ E + D+E  +  + EE ETEENK  E+      R      + T +K ++  IS   
Sbjct: 813  EKNSEKEQDSEVSEDTKSEEKETEENK--ELTDTCKER-----ESDTGKKKVEHEISEGN 865

Query: 349  AVTWAPAAVLGMAGRVLHLTPAPAVSSTKGRAMSLSDALKGV---------TDNVVDTVV 399
              T A AA+   A +  HL            A+ +   +K +          + ++D   
Sbjct: 866  VATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREK 925

Query: 400  HYVPLPRLSLMEPESEFRDIDNPPAEVE-RREAERRASG-------APSAGPEPAPRLAQ 451
              +   R  L+     F       AE+  R++ E++  G         S GP  AP  A 
Sbjct: 926  EALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQHGQNPQQAHQHSGGPGLAPLGAA 985

Query: 452  PRRSLRSAQSPGAPPGPGLEDEVATPAAPRPG 483
                +   Q P  PP P +  ++  P  P+PG
Sbjct: 986  GHPGMMPHQQP--PPYPLMHHQMPPPHPPQPG 1015


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP- 480
           PP  V  +  +  A G P     P P+   P +++     PG P  PG + +V  P  P 
Sbjct: 627 PPGPVGEKGIQGVA-GNPGQPGIPGPK-GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPG 684

Query: 481 ---RPGFPAVPREK 491
              +PG P +P  K
Sbjct: 685 LPGQPGLPGIPGSK 698



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 402 VPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
           + LP L   + E  F  I  PP             GA   GP   P     R        
Sbjct: 361 IGLPGLPGEKGERGFPGIQGPPGLPG-------PPGAAVMGPPGPPGFPGERGQKGDEGP 413

Query: 462 PGA--PPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSD 498
           PG   P  PGL+ +   P  P P  PA P   P   + +
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP- 480
           PP  V  +  +  A G P     P P+   P +++     PG P  PG + +V  P  P 
Sbjct: 627 PPGPVGEKGIQGVA-GNPGQPGIPGPK-GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPG 684

Query: 481 ---RPGFPAVPREK 491
              +PG P +P  K
Sbjct: 685 LPGQPGLPGIPGSK 698



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 402 VPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
           + LP L   + E  F  I  PP             GA   GP   P     R        
Sbjct: 361 IGLPGLPGEKGERGFPGIQGPPGLPG-------PPGAAVMGPPGPPGFPGERGQKGDEGP 413

Query: 462 PGA--PPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSD 498
           PG   P  PGL+ +   P  P P  PA P   P   + +
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 422 PPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPGLEDEVATPAAP- 480
           PP  V  +  +  A G P     P P+   P +++     PG P  PG + +V  P  P 
Sbjct: 627 PPGPVGEKGIQGVA-GNPGQPGIPGPK-GDPGQTITQPGKPGLPGNPGRDGDVGLPGDPG 684

Query: 481 ---RPGFPAVPREK 491
              +PG P +P  K
Sbjct: 685 LPGQPGLPGIPGSK 698



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 402 VPLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQS 461
           + LP L   + E  F  I  PP             GA   GP   P     R        
Sbjct: 361 IGLPGLPGEKGERGFPGIQGPPGLPG-------PPGAAVMGPPGPPGFPGERGQKGDEGP 413

Query: 462 PGA--PPGPGLEDEVATPAAPRPGFPAVPREKPKRRVSD 498
           PG   P  PGL+ +   P  P P  PA P   P   + +
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452


>gi|26190608 synaptojanin 2 [Homo sapiens]
          Length = 1496

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 438  APSAGPEPAPRLAQP-----RRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKP 492
            AP   P P PR  QP     R S R   S  APPG G     A+   P    P VP+  P
Sbjct: 1280 APRVPPVPKPRTFQPGKAAERPSHRKPASDEAPPGAG-----ASVPPPLEAPPLVPKVPP 1334

Query: 493  KRRVS 497
            +R+ S
Sbjct: 1335 RRKKS 1339


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,999,194
Number of Sequences: 37866
Number of extensions: 1176340
Number of successful extensions: 11879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 544
Number of HSP's that attempted gapping in prelim test: 9211
Number of HSP's gapped (non-prelim): 2769
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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