Search of human proteins with 223671927

Search of human proteins with 223671927

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo
sapiens]
         (275 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo sapi...   557   e-159
gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo sapi...   400   e-112
gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo ...    31   1.0  
gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo ...    31   1.0  
gi|39812055 arrestin, beta 2 isoform 2 [Homo sapiens]                  31   1.3  
gi|4757780 arrestin, beta 2 isoform 1 [Homo sapiens]                   31   1.3  
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]             31   1.3  
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]            30   2.3  
gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]         30   2.3  
gi|71061468 centromere protein E [Homo sapiens]                        30   3.0  
gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]         30   3.0  
gi|112807234 G protein-coupled receptor, family C, group 6, memb...    30   3.0  
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]          29   5.1  
gi|4505683 platelet-derived growth factor receptor beta precurso...    28   6.7  
gi|4557880 interferon gamma receptor 1 precursor [Homo sapiens]        28   6.7  
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  28   6.7  
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo...    28   6.7  
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]            28   8.7  
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]            28   8.7  
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ...    28   8.7  
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ...    28   8.7  
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s...    28   8.7  
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s...    28   8.7  
gi|115511036 alpha-kinase 3 [Homo sapiens]                             28   8.7  
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]    28   8.7  
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa...    28   8.7  

>gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo
           sapiens]
          Length = 275

 Score =  557 bits (1435), Expect = e-159
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
           MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA
Sbjct: 1   MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60

Query: 61  RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDG 120
           RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDG
Sbjct: 61  RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDG 120

Query: 121 LLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVY 180
           LLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVY
Sbjct: 121 LLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVY 180

Query: 181 VSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGL 240
           VSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGL
Sbjct: 181 VSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGL 240

Query: 241 MNQASKREKWIKADAPKGTVSFRRQSWFQSLKLQD 275
           MNQASKREKWIKADAPKGTVSFRRQSWFQSLKLQD
Sbjct: 241 MNQASKREKWIKADAPKGTVSFRRQSWFQSLKLQD 275


>gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
           sapiens]
          Length = 392

 Score =  400 bits (1028), Expect = e-112
 Identities = 205/208 (98%), Positives = 208/208 (100%)

Query: 68  TLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYL 127
           +++GQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYL
Sbjct: 185 SVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYL 244

Query: 128 YTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKV 187
           YTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKV
Sbjct: 245 YTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKV 304

Query: 188 ELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKR 247
           ELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKR
Sbjct: 305 ELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKR 364

Query: 248 EKWIKADAPKGTVSFRRQSWFQSLKLQD 275
           EKWIKADAPKGTVSFRRQSWFQSLKLQD
Sbjct: 365 EKWIKADAPKGTVSFRRQSWFQSLKLQD 392



 Score =  168 bits (425), Expect = 5e-42
 Identities = 99/244 (40%), Positives = 125/244 (51%), Gaps = 33/244 (13%)

Query: 1   MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
           MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA
Sbjct: 1   MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60

Query: 61  RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVST--- 117
           RRTLKEWTLQ            V   G +   +  H + +    +    G  V V+    
Sbjct: 61  RRTLKEWTLQ------------VSPFGRLRARLPCHLAVRPLDPLTYPDGDRVLVAVCGV 108

Query: 118 ---EDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQ 174
                GL   +  Y E     +   D         +    K G     S SGC+K  + +
Sbjct: 109 EGGVRGLDGLQVKYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIE 168

Query: 175 GAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDV------NSEVHVQEMAE 228
           G            ++++  G+ I++     + H+Q  G +V        N ++H  + + 
Sbjct: 169 G---------DNCKIETEHGTSILQSVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSA 219

Query: 229 VRKD 232
           V  D
Sbjct: 220 VTID 223


>gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
           sapiens]
          Length = 330

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 157 GNITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVD 216
           G I   SS G +         D + ++    E +SH G +I    +  Q H Q  G  V 
Sbjct: 41  GRIAAYSSPGLVAEEGTHSIGDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHV- 99

Query: 217 VNSEVHVQ-EMAEVRKDD 233
              ++HVQ +  EV +DD
Sbjct: 100 ---QLHVQLKQVEVEEDD 114


>gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo
           sapiens]
          Length = 330

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 157 GNITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVD 216
           G I   SS G +         D + ++    E +SH G +I    +  Q H Q  G  V 
Sbjct: 41  GRIAAYSSPGLVAEEGTHSIGDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHV- 99

Query: 217 VNSEVHVQ-EMAEVRKDD 233
              ++HVQ +  EV +DD
Sbjct: 100 ---QLHVQLKQVEVEEDD 114


>gi|39812055 arrestin, beta 2 isoform 2 [Homo sapiens]
          Length = 394

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 53  EVPPPGPARRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGS 111
           E P P P+  T + + +  + LH++    K +       N+++H ++ S  T+ K++ S
Sbjct: 162 EKPGPQPSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVS 220


>gi|4757780 arrestin, beta 2 isoform 1 [Homo sapiens]
          Length = 409

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 53  EVPPPGPARRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGS 111
           E P P P+  T + + +  + LH++    K +       N+++H ++ S  T+ K++ S
Sbjct: 177 EKPGPQPSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVS 235


>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
          Length = 2440

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 83   VICLGTVYGNIDIHASDKSAVTIDKLQGS--SVTVSTEDGLLKAKYLYTESSFLSSAAGD 140
            +IC     G+      +++ ++   +QG+  + T S EDGL   K +  ES  + +  G 
Sbjct: 1272 LICRALPRGSPHSDLKERTVLSGSIMQGTPRATTESFEDGLKYPKQIKRESPPIRAFEGA 1331

Query: 141  ITLGSVHGNITLQSKMG 157
            IT G  +  IT   +MG
Sbjct: 1332 ITKGKPYDGITTIKEMG 1348


>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 576

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 32  WACQARPYSSGGSERWPGSETEVPPPGPARRTLKEWTLQGQKLHVQTKGGKVIC 85
           W  Q+ PY+ GG+  W           P+  ++  WT  G++     +G    C
Sbjct: 59  WKIQSLPYAKGGAPHWNSEFQTKAKEIPSLHSVPRWTRVGRRRGSGARGFSAPC 112


>gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]
          Length = 232

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 104 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNI 159
           +ID L GS  T      LL    Y++TE SFL    G+ITL     ++  +  +  I
Sbjct: 50  SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRI 106


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 199 KVPSSLQAHLQLSGKEVDVNSEVHVQ-EMAEVRKDDVVTVTGLMNQASKREK 249
           KVP  L  +L+L GK  D+  E++ + E  E  +++V+ ++ L +  S+ E+
Sbjct: 707 KVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVER 758


>gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]
          Length = 276

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 104 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITL 143
           +ID L GS  T      LL    Y++TE SFL    G+ITL
Sbjct: 50  SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITL 90


>gi|112807234 G protein-coupled receptor, family C, group 6, member
           A [Homo sapiens]
          Length = 926

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 115 VSTEDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQ 174
           ++T+   LK  Y Y+  S  S A    +L S+ GN+T+       T  SSSG  K++T Q
Sbjct: 843 INTKSAFLKMIYSYSSHSVSSIALSPASLDSMSGNVTM-------TNPSSSG--KSATWQ 893

Query: 175 GAIDV 179
            + D+
Sbjct: 894 KSKDL 898


>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
          Length = 234

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 14  RLCLRQVRLWAG--AGRWACW----ACQARPYSSGGSERWPGSETEVPPPGPARRTLKEW 67
           RLC  QV    G  AG  A W    +   R   S G+   P +    PPPGPA     +W
Sbjct: 70  RLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPGPAAAPEGDW 129


>gi|4505683 platelet-derived growth factor receptor beta precursor
           [Homo sapiens]
          Length = 1106

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 99  DKSAVTIDKLQGSSVTVSTEDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGN 158
           D+ A+ I  ++   V +  E G L+   L+   +        +   +      L  K   
Sbjct: 302 DEKAINITVVESGYVRLLGEVGTLQFAELHRSRTL------QVVFEAYPPPTVLWFKDNR 355

Query: 159 ITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVN 218
              DSS+G +  ST   +   YVS+L  V +K  +            A +QLS  ++ +N
Sbjct: 356 TLGDSSAGEIALSTRNVSETRYVSELTLVRVKVAEAGHYTMRAFHEDAEVQLS-FQLQIN 414

Query: 219 SEVHVQEMAEVRKD 232
             V V E++E   D
Sbjct: 415 VPVRVLELSESHPD 428


>gi|4557880 interferon gamma receptor 1 precursor [Homo sapiens]
          Length = 489

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/68 (22%), Positives = 31/68 (45%)

Query: 136 SAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGS 195
           S  G I L S H     +S       D+ S CL++ ++    +   +  G+++ +  +  
Sbjct: 387 SEPGSIALNSYHSRNCSESDHSRNGFDTDSSCLESHSSLSDSEFPPNNKGEIKTEGQELI 446

Query: 196 IIVKVPSS 203
            ++K P+S
Sbjct: 447 TVIKAPTS 454


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 38   PYSSGGSERWPGSETEVPPPGPARRTLKEWTLQGQKLHVQ----------TKGGKVICLG 87
            P S+GGS+    +     PPG A   + + T+Q  K  V           T  G V   G
Sbjct: 1034 PTSTGGSKSPGSAGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSG 1093

Query: 88   TVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYLYTESSFLSSAAGDITLGSVH 147
            +   +    +S  SA T  K++ S    S+   L  + Y    SS  S +      G   
Sbjct: 1094 SKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKP 1153

Query: 148  GN 149
            G+
Sbjct: 1154 GS 1155


>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
            sapiens]
          Length = 2168

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 19/87 (21%)

Query: 1    MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
            +L  C G + GC   C R        G W C AC A+  +SG + +              
Sbjct: 1945 LLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAK--ASGQTLK-------------- 1988

Query: 61   RRTLKEWTLQGQKLHVQTKGGKVICLG 87
               +K+  ++G+K +   KG KV   G
Sbjct: 1989 ---IKKLHVKGKKTNESKKGKKVTLTG 2012


>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
          Length = 954

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 38  PYSSGGSERWPGSETEVPPPGPARRTLKEWTLQGQKLHVQ 77
           P S   SE  P S T  PPPGP +  L++      K HVQ
Sbjct: 354 PLSRTRSEPLPPSATAPPPPGPMQPRLEQ-----LKTHVQ 388


>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
          Length = 991

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 38  PYSSGGSERWPGSETEVPPPGPARRTLKEWTLQGQKLHVQ 77
           P S   SE  P S T  PPPGP +  L++      K HVQ
Sbjct: 391 PLSRTRSEPLPPSATAPPPPGPMQPRLEQ-----LKTHVQ 425


>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
           sapiens]
          Length = 404

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 32  WACQARPYSSGGSERWPGSETEVPPPGPARRTLKEWTLQGQKLHVQTKGGKVIC 85
           W   + PY+ GG+  W           P+  ++  WT  G++     +G    C
Sbjct: 59  WKIHSLPYAKGGAPHWNSEFQTKAKEIPSLHSVPRWTRVGRRRGSGARGFSAPC 112


>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
           sapiens]
          Length = 404

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 32  WACQARPYSSGGSERWPGSETEVPPPGPARRTLKEWTLQGQKLHVQTKGGKVIC 85
           W   + PY+ GG+  W           P+  ++  WT  G++     +G    C
Sbjct: 59  WKIHSLPYAKGGAPHWNSEFQTKAKEIPSLHSVPRWTRVGRRRGSGARGFSAPC 112


>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
           sapiens]
          Length = 634

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 48  PGSETEVPPPGPA-RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTID 106
           PG +  VPPP PA R T +E    G     +T G K              AS  ++ T  
Sbjct: 200 PGKQAPVPPPKPASRNTTRE--AAGSSHSKKTTGSKA------------SASPSTSSTSS 245

Query: 107 KLQGSSVTVSTEDGLL---KAKYLYTESSFLSSAAGDIT 142
           + + S  TVS++ G +   K K    +    S  + D T
Sbjct: 246 RPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTT 284


>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
           sapiens]
          Length = 645

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 48  PGSETEVPPPGPA-RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTID 106
           PG +  VPPP PA R T +E    G     +T G K              AS  ++ T  
Sbjct: 211 PGKQAPVPPPKPASRNTTRE--AAGSSHSKKTTGSKA------------SASPSTSSTSS 256

Query: 107 KLQGSSVTVSTEDGLL---KAKYLYTESSFLSSAAGDIT 142
           + + S  TVS++ G +   K K    +    S  + D T
Sbjct: 257 RPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTT 295


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 48  PGSETEVP-PPGPARRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTID 106
           P +  +VP PP   R   ++ TLQGQ  H +T G  + C  T        A   SA +  
Sbjct: 720 PQASVQVPTPPARRRHGTRDSTLQGQAGH-RTPGEVLECQTTT-------APTMSASSSS 771

Query: 107 KLQGSSVTVSTEDGLLKAKYLYTESSFLSSA 137
            +    V+ S   G+++   + T+    +SA
Sbjct: 772 DVASIGVSTSGSQGIIEPMDMETQEDGRTSA 802


>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
          Length = 640

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 194 GSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKREKWIK 252
           GS+++K P  ++ +  +S K+    S+ H +E  +++K D+ T+        + E+  K
Sbjct: 441 GSVLLKCPKPMEENHSMSHKKSKKKSKKH-KEKDQIKKHDIETIEEKEEDLKREEEIAK 498


>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
           sapiens]
          Length = 1925

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 108 LQGSSVTVSTEDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGC 167
           L+G SV     +   + K L+T+S+       D+ L     ++       N TV+S   C
Sbjct: 34  LRGKSVQKKQAESKSQIK-LHTQSAPFGLCPKDMMLTQAPSSVVRSRNSRNHTVNSGGSC 92

Query: 168 LKAST 172
           L AST
Sbjct: 93  LSAST 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,605,196
Number of Sequences: 37866
Number of extensions: 476306
Number of successful extensions: 1676
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 30
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.