Guide to the Human Genome
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Name: TMEM71 Sequence: fasta or formatted (276aa) NCBI GI: 223555924
Description:

transmembrane protein 71 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {232aa} transmembrane protein 71 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         14           1
 C cysteine            4.0         11           1
 D aspartate           5.8         16           2
 E glutamate           5.1         14           1
 F phenylalanine       4.7         13           2
 G glycine             5.1         14           2
 H histidine           2.5          7           1
 I isoleucine          5.8         16           2
 K lysine              2.9          8           1
 L leucine            10.1         28           2
 M methionine          2.2          6           1
 N asparagine          4.0         11           1
 P proline             3.3          9           2
 Q glutamine           2.9          8           1
 R arginine            4.3         12           2
 S serine             16.3         45           4
 T threonine           7.2         20           2
 V valine              3.6         10           1
 W tryptophan          1.8          5           1
 Y tyrosine            3.3          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 71 isoform 1 
TMEM71                0.604   transmembrane protein 71 isoform 2 
FBN2                  0.017   fibrillin 2 precursor 
ZFP28                 0.015   zinc finger protein 28 
KIAA1671              0.009   hypothetical protein LOC85379 
KDM2B                 0.009   F-box and leucine-rich repeat protein 10 isoform a [...
FAM185A               0.009   hypothetical protein LOC222234 isoform 2 
FAM185A               0.009   hypothetical protein LOC222234 isoform 1 
DSPP                  0.007   dentin sialophosphoprotein preproprotein 
PTPRA                 0.007   protein tyrosine phosphatase, receptor type, A isofor...
EXO1                  0.007   exonuclease 1 isoform b 
EXO1                  0.007   exonuclease 1 isoform a 
EXO1                  0.007   exonuclease 1 isoform b 
FAM123B               0.006   family with sequence similarity 123B 
FBN1                  0.006   fibrillin 1 precursor 
FBN3                  0.006   fibrillin 3 precursor 
PTPN13                0.006   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.006   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.006   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.006   protein tyrosine phosphatase, non-receptor type 13 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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