Guide to the Human Genome
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Name: FAM185A Sequence: fasta or formatted (275aa) NCBI GI: 223671927
Description:

hypothetical protein LOC222234 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {392aa} hypothetical protein LOC222234 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         19           2
 C cysteine            2.5          7           1
 D aspartate           4.4         12           2
 E glutamate           4.7         13           1
 F phenylalanine       1.5          4           1
 G glycine             9.5         26           2
 H histidine           2.2          6           1
 I isoleucine          4.0         11           2
 K lysine              7.6         21           1
 L leucine             9.1         25           2
 M methionine          1.5          4           1
 N asparagine          2.2          6           1
 P proline             3.3          9           3
 Q glutamine           5.8         16           1
 R arginine            4.4         12           2
 S serine             11.3         31           3
 T threonine           5.8         16           1
 V valine              8.7         24           2
 W tryptophan          2.9          8           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC222234 isoform 2 
FAM185A               0.705   hypothetical protein LOC222234 isoform 1 
LOC100290189          0.011   PREDICTED: hypothetical protein XP_002347700 
LOC100289086          0.011   PREDICTED: hypothetical protein XP_002344149 
ARRB2                 0.011   arrestin, beta 2 isoform 2 
ARRB2                 0.011   arrestin, beta 2 isoform 1 
NCOR1                 0.011   nuclear receptor co-repressor 1 
LOC100293107          0.009   PREDICTED: hypothetical protein 
TMEM71                0.009   transmembrane protein 71 isoform 2 
CENPE                 0.009   centromere protein E 
TMEM71                0.009   transmembrane protein 71 isoform 1 
GPRC6A                0.009   G protein-coupled receptor, family C, group 6, memb...
ZBED3                 0.008   zinc finger, BED-type containing 3 
PDGFRB                0.006   platelet-derived growth factor receptor beta precurso...
IFNGR1                0.006   interferon gamma receptor 1 precursor 
MED1                  0.006   mediator complex subunit 1 
BAZ2B                 0.006   bromodomain adjacent to zinc finger domain, 2B [Homo...
HDAC7                 0.006   histone deacetylase 7 isoform d 
HDAC7                 0.006   histone deacetylase 7 isoform a 
LOC100290679          0.006   PREDICTED: hypothetical protein XP_002347834 
LOC100288571          0.006   PREDICTED: hypothetical protein XP_002343612 
PHACTR2               0.006   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.006   phosphatase and actin regulator 2 isoform 1 
ALPK3                 0.006   alpha-kinase 3 
ELL2                  0.006   elongation factor, RNA polymerase II, 2 
CCDC108               0.006   coiled-coil domain containing 108 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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