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Search of human proteins with 223555924
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]
(276 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens] 563 e-161
gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens] 350 6e-97
gi|66346695 fibrillin 2 precursor [Homo sapiens] 34 0.16
gi|22094125 zinc finger protein 28 [Homo sapiens] 33 0.35
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 30 3.0
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 30 3.0
gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo sapi... 30 3.0
gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo sapi... 30 3.0
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 29 3.9
gi|4506303 protein tyrosine phosphatase, receptor type, A isofor... 29 3.9
gi|39995071 exonuclease 1 isoform b [Homo sapiens] 29 5.1
gi|39995069 exonuclease 1 isoform a [Homo sapiens] 29 5.1
gi|18491016 exonuclease 1 isoform b [Homo sapiens] 29 5.1
gi|124244056 family with sequence similarity 123B [Homo sapiens] 28 6.7
gi|24430141 fibrillin 1 precursor [Homo sapiens] 28 6.7
gi|56237021 fibrillin 3 precursor [Homo sapiens] 28 6.7
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i... 28 8.7
gi|18375648 protein tyrosine phosphatase, non-receptor type 13 i... 28 8.7
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i... 28 8.7
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 28 8.7
>gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]
Length = 276
Score = 563 bits (1452), Expect = e-161
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60
MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT
Sbjct: 1 MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60
Query: 61 CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDIN 120
CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDIN
Sbjct: 61 CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDIN 120
Query: 121 SSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMNAESVITSSSSHIISQPPG 180
SSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMNAESVITSSSSHIISQPPG
Sbjct: 121 SSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMNAESVITSSSSHIISQPPG 180
Query: 181 GNSHSLSLQSQLTASERFQENSSDHSETRLLQEVFFQAILLAVCLIISACARWFMGEILA 240
GNSHSLSLQSQLTASERFQENSSDHSETRLLQEVFFQAILLAVCLIISACARWFMGEILA
Sbjct: 181 GNSHSLSLQSQLTASERFQENSSDHSETRLLQEVFFQAILLAVCLIISACARWFMGEILA 240
Query: 241 SVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 276
SVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI
Sbjct: 241 SVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 276
>gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]
Length = 232
Score = 350 bits (899), Expect = 6e-97
Identities = 193/295 (65%), Positives = 200/295 (67%), Gaps = 82/295 (27%)
Query: 1 MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60
MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT
Sbjct: 1 MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60
Query: 61 CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLV---------------- 104
CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLV
Sbjct: 61 CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKRICHSFSSL 120
Query: 105 ---STSKSWLHGSIFGDINSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKM 161
STSKSWLHGSIFG D++ S D+W G
Sbjct: 121 FNLSTSKSWLHGSIFG----------------------------DINSSPSEDNWLKG-- 150
Query: 162 NAESVITSSSSHIISQPPGGNSHSLSLQSQLTASERFQENSSDHSETRLLQEVFFQAILL 221
+ R + + +ETRLLQEVFFQAILL
Sbjct: 151 ---------------------------------TRRLDTDHCNGNETRLLQEVFFQAILL 177
Query: 222 AVCLIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 276
AVCLIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI
Sbjct: 178 AVCLIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 232
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 33.9 bits (76), Expect = 0.16
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 34 SFTCDSLDGYHSF-----ECGSIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNI 88
SF C+ +GY S C ID C R+P L G + TE SF CD
Sbjct: 1137 SFECECFEGYESGFMMMKNCMDIDE-------CERNPLLCRGGTCVNTEGSFQCDCPLGH 1189
Query: 89 TLNPSQ 94
L+PS+
Sbjct: 1190 ELSPSR 1195
>gi|22094125 zinc finger protein 28 [Homo sapiens]
Length = 868
Score = 32.7 bits (73), Expect = 0.35
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 74 IWTEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDINSS-------PSED 126
IW +S L G+ P S++ +E K L GS+F S P +D
Sbjct: 257 IWENNSDL-GSAGHCVAKPDLVSLLEQEKEPWMVKRELTGSLFSGQRSVHETQELFPKQD 315
Query: 127 NWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMNAESVITSSSSHIISQPPGGNSHSL 186
++ +G TD + LDCSS ++W+S + + + Q P ++ +L
Sbjct: 316 SYAEGV----TDRTSNTK--LDCSSFRENWDSDYVFGRKLAVGQETQ-FRQEPITHNKTL 368
Query: 187 SLQSQLTASERFQENSSDHSETRL 210
S + + T ++ + D SE ++
Sbjct: 369 SKERERTYNKSGRWFYLDDSEEKV 392
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 29.6 bits (65), Expect = 3.0
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 107 SKSWLHGSIFGDINSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMNAESV 166
S W S D S P D + R T+ + + + S W + ES+
Sbjct: 1492 SVPWRSHSFCKDRRSGPFVDQLKQCFSRQPTEPKDTDTLVHEAGSQYGTWTEQCQSGESL 1551
Query: 167 IT----SSSSHIISQPPGGNSHSLSLQSQLTAS------ERFQENSS-DHSETRL 210
T SS++ QPP SLS Q++ T++ R Q ++S DHS T L
Sbjct: 1552 ATESPDSSATSTRKQPPSSRLSSLSSQTEPTSAGDQYDCSRDQRSTSVDHSSTDL 1606
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 158 SGKMNAESVITS--SSSHIISQPPGGNSHSLSLQSQLTASERFQENSSDHSETRLLQE 213
SG+ A S+ TS SSSH+ +PP G+S S +S LT FQ+ E +L ++
Sbjct: 813 SGRKRASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLT---YFQQQLKPGKEDKLFRK 867
>gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 50 SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITL 90
+ID L GS T LL Y++TE SFL G+ITL
Sbjct: 104 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITL 143
>gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
sapiens]
Length = 392
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 50 SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITL 90
+ID L GS T LL Y++TE SFL G+ITL
Sbjct: 221 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITL 260
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 29.3 bits (64), Expect = 3.9
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 76 TEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDINSSPSEDNWLKGTRRL 135
++ S D D + + N S +S ++ S+ S S +SS SE + +
Sbjct: 585 SDSSDSSDSDSSDSSNSSDSS----DSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKS 640
Query: 136 DTDHCNG-----NADDLDCSSLTDDWESGKMNAESVITSSSSHIISQPPGGNSHSLSLQS 190
D+ N N+D D S+ ++ +S + S +SSS S +S S +
Sbjct: 641 DSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSE 700
Query: 191 QLTASERFQENSSDHSET 208
+S+ +SSD S++
Sbjct: 701 SSDSSDSSDSDSSDSSDS 718
Score = 28.9 bits (63), Expect = 5.1
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 120 NSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMN-----AESVITSSSSHI 174
+S S+ + + R D+ + + ++D D S+ +D +S N ++S +S+SS
Sbjct: 844 SSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDS 903
Query: 175 ISQPPGGNSHSLSLQSQLTASERFQENSSDHSET 208
S +S S + +SE NSSD+S +
Sbjct: 904 DSSDSSNSSDSSDSSNSSDSSE--SSNSSDNSNS 935
>gi|4506303 protein tyrosine phosphatase, receptor type, A isoform 1
precursor [Homo sapiens]
Length = 802
Score = 29.3 bits (64), Expect = 3.9
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 64 SPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDINSSP 123
SP + Y+ T +S D D T S S+ +S + +WL + F D + P
Sbjct: 66 SPNITLGPTYLTTVNS--SDSDNGTTRTASTNSIGIT---ISPNGTWLPDNQFTDARTEP 120
Query: 124 SEDNWLKGTRRLDTDHCNGNADDLD 148
E N +T +GN+D D
Sbjct: 121 WEGNSSTAATTPETFPPSGNSDSKD 145
>gi|39995071 exonuclease 1 isoform b [Homo sapiens]
Length = 846
Score = 28.9 bits (63), Expect = 5.1
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 76 TEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDINSSPSEDNWLKGTRRL 135
T F C D ++ + E V+ ++ LH S +GD +G R +
Sbjct: 502 TRSRFFCSSDSTDCVSNKVSIQPLDETAVTDKENNLHESEYGD----------QEGKRLV 551
Query: 136 DTDHCNGNADDLDCSSLTDD 155
DTD ++DD+ + + D
Sbjct: 552 DTDVARNSSDDIPNNHIPGD 571
>gi|39995069 exonuclease 1 isoform a [Homo sapiens]
Length = 803
Score = 28.9 bits (63), Expect = 5.1
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 76 TEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDINSSPSEDNWLKGTRRL 135
T F C D ++ + E V+ ++ LH S +GD +G R +
Sbjct: 502 TRSRFFCSSDSTDCVSNKVSIQPLDETAVTDKENNLHESEYGD----------QEGKRLV 551
Query: 136 DTDHCNGNADDLDCSSLTDD 155
DTD ++DD+ + + D
Sbjct: 552 DTDVARNSSDDIPNNHIPGD 571
>gi|18491016 exonuclease 1 isoform b [Homo sapiens]
Length = 846
Score = 28.9 bits (63), Expect = 5.1
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 76 TEDSFLCDKDGNITLNPSQTSVMYKENLVSTSKSWLHGSIFGDINSSPSEDNWLKGTRRL 135
T F C D ++ + E V+ ++ LH S +GD +G R +
Sbjct: 502 TRSRFFCSSDSTDCVSNKVSIQPLDETAVTDKENNLHESEYGD----------QEGKRLV 551
Query: 136 DTDHCNGNADDLDCSSLTDD 155
DTD ++DD+ + + D
Sbjct: 552 DTDVARNSSDDIPNNHIPGD 571
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 115 IFGDINSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKMNAESVITSSSSHI 174
+FGD+ S S D+ L G C + D S+TD SG A T SS +
Sbjct: 312 LFGDVTSLKSFDS-LTG--------CGDIIAEQDMDSMTDSMASGGQRANRDGTKRSSCL 362
Query: 175 ISQPPGGNSHSL 186
++ GG +L
Sbjct: 363 VTYQGGGEEMAL 374
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 28.5 bits (62), Expect = 6.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 34 SFTCDSLDGYHSF----ECGSIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLC 82
S+TC GY S EC ID C ++ R+ NG I T+ SF C
Sbjct: 510 SYTCQCRAGYQSTLTRTECRDIDE-------CLQNGRICNNGRCINTDGSFHC 555
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 30 CIFPSFTCDSLDGYHSFECG-SIDPLTGS------HYTCRRSPRLLTNGYYIWTEDSFLC 82
C C +L G + C + PL GS C P L NG + T SF C
Sbjct: 2218 CHARGMECKNLIGTFACVCPPGMRPLPGSGEGCTDDNECHAQPDLCVNGRCVNTAGSFRC 2277
Query: 83 DKDGNITLNPSQT 95
D D +P+ T
Sbjct: 2278 DCDEGFQPSPTLT 2290
>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
isoform 4 [Homo sapiens]
Length = 2490
Score = 28.1 bits (61), Expect = 8.7
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 119 INSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDD---WESGKMNAESVITSSSSHII 175
I+SS + +W +GT R +++ G + L SL+ ES ++ V +SH+
Sbjct: 1211 IDSSSKDHHWSRGTLRHISENSFGPSGGLREGSLSSQDSRTESASLSQSQVNGFFASHLG 1270
Query: 176 SQPPGGNSH---SLSLQSQLTASERFQENSSDHSETR 209
Q + H S S+ S+ T E F + S+ S+T+
Sbjct: 1271 DQTWQESQHGSPSPSVISKATEKETFTD--SNQSKTK 1305
>gi|18375648 protein tyrosine phosphatase, non-receptor type 13
isoform 3 [Homo sapiens]
Length = 2294
Score = 28.1 bits (61), Expect = 8.7
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 119 INSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDD---WESGKMNAESVITSSSSHII 175
I+SS + +W +GT R +++ G + L SL+ ES ++ V +SH+
Sbjct: 1020 IDSSSKDHHWSRGTLRHISENSFGPSGGLREGSLSSQDSRTESASLSQSQVNGFFASHLG 1079
Query: 176 SQPPGGNSH---SLSLQSQLTASERFQENSSDHSETR 209
Q + H S S+ S+ T E F + S+ S+T+
Sbjct: 1080 DQTWQESQHGSPSPSVISKATEKETFTD--SNQSKTK 1114
>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
isoform 1 [Homo sapiens]
Length = 2485
Score = 28.1 bits (61), Expect = 8.7
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 119 INSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDD---WESGKMNAESVITSSSSHII 175
I+SS + +W +GT R +++ G + L SL+ ES ++ V +SH+
Sbjct: 1211 IDSSSKDHHWSRGTLRHISENSFGPSGGLREGSLSSQDSRTESASLSQSQVNGFFASHLG 1270
Query: 176 SQPPGGNSH---SLSLQSQLTASERFQENSSDHSETR 209
Q + H S S+ S+ T E F + S+ S+T+
Sbjct: 1271 DQTWQESQHGSPSPSVISKATEKETFTD--SNQSKTK 1305
>gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform
2 [Homo sapiens]
Length = 2466
Score = 28.1 bits (61), Expect = 8.7
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 119 INSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDD---WESGKMNAESVITSSSSHII 175
I+SS + +W +GT R +++ G + L SL+ ES ++ V +SH+
Sbjct: 1192 IDSSSKDHHWSRGTLRHISENSFGPSGGLREGSLSSQDSRTESASLSQSQVNGFFASHLG 1251
Query: 176 SQPPGGNSH---SLSLQSQLTASERFQENSSDHSETR 209
Q + H S S+ S+ T E F + S+ S+T+
Sbjct: 1252 DQTWQESQHGSPSPSVISKATEKETFTD--SNQSKTK 1286
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,662,715
Number of Sequences: 37866
Number of extensions: 457632
Number of successful extensions: 1333
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 43
length of query: 276
length of database: 18,247,518
effective HSP length: 101
effective length of query: 175
effective length of database: 14,423,052
effective search space: 2524034100
effective search space used: 2524034100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.