Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 223555921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223555921 hepatocellular carcinoma related protein 1 isoform
2 [Homo sapiens]
(372 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223555921 hepatocellular carcinoma related protein 1 isoform ... 737 0.0
gi|223555919 hepatocellular carcinoma related protein 1 isoform ... 721 0.0
gi|13375926 vacuolar protein sorting 37B [Homo sapiens] 88 1e-17
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 79 7e-15
gi|117938318 vacuolar protein sorting 37D [Homo sapiens] 74 2e-13
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 40 0.003
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 40 0.003
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 39 0.008
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 39 0.010
gi|118498356 kinectin 1 isoform a [Homo sapiens] 38 0.017
gi|118498368 kinectin 1 isoform c [Homo sapiens] 38 0.017
gi|33620775 kinectin 1 isoform a [Homo sapiens] 38 0.017
gi|156119615 myosin IXA [Homo sapiens] 38 0.017
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 38 0.017
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 37 0.022
gi|124249396 coiled-coil domain containing 30 [Homo sapiens] 37 0.029
gi|42490753 TEA domain family member 3 [Homo sapiens] 37 0.037
gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens] 36 0.049
gi|24497609 nucleoporin 62kDa [Homo sapiens] 36 0.064
gi|24497607 nucleoporin 62kDa [Homo sapiens] 36 0.064
gi|24497605 nucleoporin 62kDa [Homo sapiens] 36 0.064
gi|24497603 nucleoporin 62kDa [Homo sapiens] 36 0.064
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 35 0.083
gi|21735548 centrosomal protein 2 [Homo sapiens] 35 0.11
gi|169213954 PREDICTED: similar to hCG2040171 [Homo sapiens] 35 0.11
gi|239751793 PREDICTED: similar to hCG2040171 [Homo sapiens] 35 0.11
gi|239746284 PREDICTED: similar to hCG2040171 [Homo sapiens] 35 0.11
gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi... 35 0.11
gi|110611218 ribosome binding protein 1 [Homo sapiens] 35 0.14
gi|110611220 ribosome binding protein 1 [Homo sapiens] 35 0.14
>gi|223555921 hepatocellular carcinoma related protein 1 isoform 2
[Homo sapiens]
Length = 372
Score = 737 bits (1903), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSRLLPPQFPQEKPVISVYPP 60
MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSRLLPPQFPQEKPVISVYPP
Sbjct: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSRLLPPQFPQEKPVISVYPP 60
Query: 61 IRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS 120
IRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS
Sbjct: 61 IRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS 120
Query: 121 GMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLP 180
GMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLP
Sbjct: 121 GMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLP 180
Query: 181 IPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQI 240
IPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQI
Sbjct: 181 IPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQI 240
Query: 241 ITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESC 300
ITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESC
Sbjct: 241 ITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESC 300
Query: 301 SASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQ 360
SASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQ
Sbjct: 301 SASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQ 360
Query: 361 AIAMHSQFHAPL 372
AIAMHSQFHAPL
Sbjct: 361 AIAMHSQFHAPL 372
>gi|223555919 hepatocellular carcinoma related protein 1 isoform 1
[Homo sapiens]
Length = 397
Score = 721 bits (1861), Expect = 0.0
Identities = 371/397 (93%), Positives = 371/397 (93%), Gaps = 25/397 (6%)
Query: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSR------------------ 42
MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHS
Sbjct: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINN 60
Query: 43 -------LLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL 95
LLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL
Sbjct: 61 LTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL 120
Query: 96 DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS 155
DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS
Sbjct: 121 DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS 180
Query: 156 SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 215
SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS
Sbjct: 181 SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
Query: 216 QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK 275
QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK
Sbjct: 241 QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK 300
Query: 276 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 335
YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID
Sbjct: 301 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 360
Query: 336 DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 372
DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL
Sbjct: 361 DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 397
>gi|13375926 vacuolar protein sorting 37B [Homo sapiens]
Length = 285
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 212 LSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQT 271
LS+ QL ++ E E L E + + + + +K+ + S LA NLL +P L+ +
Sbjct: 13 LSLVQLNELLEDEGQLTEMVQKMEETQNVQLNKEMTLASNRSLAEGNLLYQPQLDTLKAR 72
Query: 272 VLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
+ KY+ L + ++ K + S S S L A L+ + EE+++N+AE FL+G+
Sbjct: 73 LTQKYQELQVLFEAYQIKKTKLDRQSSSASLETLLALLQAEGAKIEEDTENMAEKFLDGE 132
Query: 332 MEIDDFLSSFMEKRTICHCRRAKEEKLQQAI 362
+ +D F+ + KR + H RR K EKLQ+ +
Sbjct: 133 LPLDSFIDVYQSKRKLAHMRRVKIEKLQEMV 163
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 79.0 bits (193), Expect = 7e-15
Identities = 40/154 (25%), Positives = 83/154 (53%)
Query: 209 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAK 268
L + ++ +L ++ E + + L P+++ + +++ + + LA +NL + LE
Sbjct: 4 LKDKTLQELEELQNDSEAIDQLALESPEVQDLQLEREMALATNRSLAERNLEFQGPLEIS 63
Query: 269 RQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFL 328
R + D+Y+ L ++ +++ + + S + L L+V + EEES+ +AE FL
Sbjct: 64 RSNLSDRYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEEESEAMAEKFL 123
Query: 329 EGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAI 362
EG++ ++ FL +F R + H RR + EKLQ+ +
Sbjct: 124 EGEVPLETFLENFSSMRMLSHLRRVRVEKLQEVV 157
>gi|117938318 vacuolar protein sorting 37D [Homo sapiens]
Length = 251
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 212 LSVSQLTDMNEQEEVLLEQFLTLPQLKQ-IITDKDDLVKSIEELARKNLLLEPSLEAKRQ 270
LS QL D+ Q+E L++ + L + Q + +++ + S LA++NL L P LE R
Sbjct: 22 LSTGQLRDLL-QDEPKLDRIVRLSRKFQGLQLEREACLASNYALAKENLALRPRLEMGRA 80
Query: 271 TVLDKYELLTQMKSTFEKKMQR----QHELSESCSASALQARLKVAAHEAEEESDNIAED 326
+ KY+ L ++ K+QR H S C+ LQA L+ A EAEE+ E
Sbjct: 81 ALAIKYQELREVAENCADKLQRLEESMHRWSPHCALGWLQAELEEAEQEAEEQM----EQ 136
Query: 327 FLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAP 371
L G+ ++ FL +F R + H RR + EKLQ+ + + P
Sbjct: 137 LLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQELLRRRERSAQP 181
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 40.0 bits (92), Expect = 0.003
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 40/202 (19%)
Query: 85 SDLGKIIQSLLDEFWKNPPVLA-PTSTAFP-----------YLYSNPSGMSPYASQGFPF 132
SDL +IQ ++ F PPV + P S ++P Y+ P G+SPY S G+P
Sbjct: 122 SDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPS-GYPP 180
Query: 133 LP------PYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDA 186
P PYPP ++T+S ++P + G + + T+ A
Sbjct: 181 NPSGYPGCPYPP------------GGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRA 228
Query: 187 S-IPTSQNGFGYKMPDVPD-AFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDK 244
S I + ++M + D A EL+ L ++ D+ + + L E + +L Q + +
Sbjct: 229 SLISAVSDKLRWRMKEEMDRAQAELNALKRTE-EDLKKGHQKLEEM---VTRLDQEVAEV 284
Query: 245 DDLVKSIEELARKNLLLEPSLE 266
D K+IE L +K+ L +LE
Sbjct: 285 D---KNIELLKKKDEELSSALE 303
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 40.0 bits (92), Expect = 0.003
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 47/234 (20%)
Query: 83 MHSDLGK-IIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS---GMSPYASQGFPFLP-PYP 137
M++D+ + ++ + ++F NP F L SN S G P ++ LP P+
Sbjct: 275 MYTDIQEPMLSAAQEQFGGNP---------FASLVSNTSSGEGSQPSRTENRDPLPNPWA 325
Query: 138 PQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGY 197
PQ + S S A TV TT A+ + G + P +P V AS+ +
Sbjct: 326 PQTSQSSSASSGTASTVGG-----TTGSTASGTSGQSTTAPNLVPGVGASM--------F 372
Query: 198 KMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARK 257
P + +++E N Q L++ L+ P ++ ++ + +LA +
Sbjct: 373 NTPGMQSLLQQITE---------NPQ---LMQNMLSAPYMRSMMQS----LSQNPDLAAQ 416
Query: 258 NLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKV 311
+L P Q E + Q TF ++MQ LS + A+QA L++
Sbjct: 417 MMLNNPLFAGNPQL----QEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 38.9 bits (89), Expect = 0.008
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 24/204 (11%)
Query: 2 SWLFP--LTKSASSSAAGSPG-------GLTSLQQQKQRLIESLRNSHSRLLPPQFPQEK 52
S +FP +T + ++S A SPG SLQQ L + PP F
Sbjct: 1271 SKVFPSEITDTVAASTAQSPGMNLSHSASSLSLQQAFSELRRAQMTEGPNTAPPNFSHTG 1330
Query: 53 PVISVYPPIRHHLMD-KQGVYVTSPLVNNFTMHSDLG-KIIQSLLDEFWKNPPVLAPTST 110
P V PP + T+P+ + +D+ +IQS V PT
Sbjct: 1331 PTFPVVPPFLSSIAGVPTTAAATAPVPATSSPPNDISTSVIQS---------EVTVPTEE 1381
Query: 111 AFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPS 170
+ ++ ++ S G P P + ++S+++ VS STTS + P + S
Sbjct: 1382 GIAGVATSTGVVT---SGGLPIPPVSESPVLSSVVSSITIPAVVSISTTSPSLQVPTSTS 1438
Query: 171 FGVLSNLPLPIPTVDASIPTSQNG 194
V+S+ L P+V S ++ G
Sbjct: 1439 EIVVSSTAL-YPSVTVSATSASAG 1461
Score = 29.3 bits (64), Expect = 6.0
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 107 PTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKP 166
P+S++ + S+ P QG PPQ+ + SLS T S +TT+ ++P
Sbjct: 722 PSSSSLTGVSSSQPIQHPQQQQGIQ--QTAPPQQTVQY--SLSQTSTSSEATTAQPVSQP 777
Query: 167 AAP------SFGVLSNLPLPIPTVDA----------SIPTSQNGFGYKMPDVPDAFPELS 210
AP S G + P+PT+ S+ +G + P P L
Sbjct: 778 QAPQVLPQVSAGKQLPVSQPVPTIQGEPQIPVATQPSVVPVHSGAHFLPVGQPLPTPLLP 837
Query: 211 ELSVSQLTDMNEQEEVLLEQFLTLP 235
+ VSQ+ F +LP
Sbjct: 838 QYPVSQIPISTPHVSTAQTGFSSLP 862
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 38.5 bits (88), Expect = 0.010
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 103 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 162
P +PTS A Y +P G +P + P P Y P + S TS + + T S + +
Sbjct: 1591 PSYSPTSPA--YEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648
Query: 163 TAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 215
+ P +PS+ S P PT + PTS + + P P S S S
Sbjct: 1649 SYSPTSPSYSPTS--PSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1698
Score = 34.7 bits (78), Expect = 0.14
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 103 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 162
P +PTS + Y ++PS SP + P P Y P + S TS S + T S + +
Sbjct: 1634 PNYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1690
Query: 163 TAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 215
+ P +PS+ S P PT + PTS + + P P S S S
Sbjct: 1691 SYSPTSPSYSPTS--PSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1740
Score = 33.5 bits (75), Expect = 0.32
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 103 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 162
P +PTS + Y ++PS SP + P P Y P + S TS S + T S + +
Sbjct: 1676 PSYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1732
Query: 163 TAKPAAPSFGVLS-----NLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 215
+ P +PS+ S P PT + PTS + + P+ P S S S
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPS-YSPTSPNYTPTSPNYSPTSPS 1789
Score = 32.3 bits (72), Expect = 0.70
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 103 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 162
P +PTS + Y ++PS SP + P P Y P + S TS S + T + T +
Sbjct: 1725 PSYSPTSPS--YSPTSPS-YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1781
Query: 163 TAKPAAPSFGVLSNLPLPIPTVDASIPTS 191
P +PS+ S P PT + P+S
Sbjct: 1782 NYSPTSPSYSPTS--PSYSPTSPSYSPSS 1808
Score = 32.0 bits (71), Expect = 0.92
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 103 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 162
P +PTS Y ++PS SP + + P P Y P S TS + T S T S T
Sbjct: 1830 PSYSPTSPK--YTPTSPS-YSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPT--SPTYSPT 1884
Query: 163 TAK--PAAPSFGVLSNLPLPIPTVDASIPTS 191
T K P +P++ S P+ PT PTS
Sbjct: 1885 TPKYSPTSPTYSPTS--PVYTPTSPKYSPTS 1913
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 97 EFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSS 156
E+ P +PTS + SP + + P P Y P S TS + + T
Sbjct: 1852 EYTPTSPKYSPTSPKY----------SPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPV 1901
Query: 157 STTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYK--MPDVPDAFPELSELSV 214
T + P +P++ S P PT PTS G Y P P S S
Sbjct: 1902 YTPTSPKYSPTSPTYSPTS--PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959
Query: 215 SQLTDMNEQE 224
+ D +++E
Sbjct: 1960 AISPDDSDEE 1969
Score = 30.0 bits (66), Expect = 3.5
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 103 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 162
P PTS + Y ++PS SP + P P Y P + S TS S + T S + S
Sbjct: 1753 PNYTPTSPS--YSPTSPS-YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSP 1809
Query: 163 TAKPAAPSFGVLS-----NLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELS 213
P +P++ S + P PT PTS + + P+ P+ S S
Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPS-YSPSSPEYTPTSPKYSPTS 1864
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.7 bits (86), Expect = 0.017
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 236 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLD-KYELLTQMKSTFEKKMQRQH 294
+LK++I +KD +KS+EEL LL + K +TV D K E+ + ++++
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELL---KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Query: 295 ELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
+LS + LQ LK +EE N + LE K
Sbjct: 855 QLSITSKVQELQNLLK-----GKEEQMNTMKAVLEEK 886
Score = 32.7 bits (73), Expect = 0.54
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 236 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE 295
Q+++ I +KD+ +K++EEL L+ + E + + + LT+ + K
Sbjct: 732 QMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ----- 786
Query: 296 LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKM 332
++ S ++L LK HE + + ++ E+ LE ++
Sbjct: 787 -NDQVSFASLVEELKKVIHEKDGKIKSV-EELLEAEL 821
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 37.7 bits (86), Expect = 0.017
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 236 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLD-KYELLTQMKSTFEKKMQRQH 294
+LK++I +KD +KS+EEL LL + K +TV D K E+ + ++++
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELL---KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Query: 295 ELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
+LS + LQ LK +EE N + LE K
Sbjct: 855 QLSITSKVQELQNLLK-----GKEEQMNTMKAVLEEK 886
Score = 32.7 bits (73), Expect = 0.54
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 236 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE 295
Q+++ I +KD+ +K++EEL L+ + E + + + LT+ + K
Sbjct: 732 QMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ----- 786
Query: 296 LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKM 332
++ S ++L LK HE + + ++ E+ LE ++
Sbjct: 787 -NDQVSFASLVEELKKVIHEKDGKIKSV-EELLEAEL 821
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.7 bits (86), Expect = 0.017
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 236 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLD-KYELLTQMKSTFEKKMQRQH 294
+LK++I +KD +KS+EEL LL + K +TV D K E+ + ++++
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELL---KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Query: 295 ELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
+LS + LQ LK +EE N + LE K
Sbjct: 855 QLSITSKVQELQNLLK-----GKEEQMNTMKAVLEEK 886
Score = 32.7 bits (73), Expect = 0.54
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 236 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE 295
Q+++ I +KD+ +K++EEL L+ + E + + + LT+ + K
Sbjct: 732 QMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ----- 786
Query: 296 LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKM 332
++ S ++L LK HE + + ++ E+ LE ++
Sbjct: 787 -NDQVSFASLVEELKKVIHEKDGKIKSV-EELLEAEL 821
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 37.7 bits (86), Expect = 0.017
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 198 KMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDK-DDLVKSIEELAR 256
++P V D E + TD+ EQ++ ++ Q ++++T++ ++L K EEL
Sbjct: 2299 RLPSVSDVSEETLTSEAAMETDITEQQQAAMQ------QEERVLTEQIENLQKEKEELTF 2352
Query: 257 KNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVA 312
+ L+LEP A L+ + S+ M+ ++ +SE S + LK A
Sbjct: 2353 EMLVLEP--RASDDETLESEASIGTADSSENLNMESEYAISEKSERSLALSSLKTA 2406
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 37.7 bits (86), Expect = 0.017
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 219 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 278
D+ E+E ++L+ L + ++ + D VK+ ++L K L L+ + + D L
Sbjct: 1146 DILEKESIILKLERNLKEFQEHLQDS---VKNTKDLNVKELKLKEEITQLTNNLQDMKHL 1202
Query: 279 LTQMKSTFEKKMQRQHELSESCSASALQAR-LKVAAHEAEEESDNIAEDFLEGKMEI 334
L + E Q +L E SAS+ + + LK EE+ ++ E + K +I
Sbjct: 1203 LQLKEEEEETNRQETEKLKEELSASSARTQNLKADLQRKEEDYADLKEKLTDAKKQI 1259
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 37.4 bits (85), Expect = 0.022
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 213 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTV 272
++ + + + E L +QF T +++ +++ KDD+ KS+ EL + LE +E + +T
Sbjct: 1484 ALEEAMEQKAELERLNKQFRT--EMEDLMSSKDDVGKSVHELEKSKRALEQQVE-EMKTQ 1540
Query: 273 LDKYE---------------LLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAE 317
L++ E L MK+ FE+ +Q + E SE ++ ++ A +
Sbjct: 1541 LEELEDELQATEDAKLRLEVNLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREMEAELED 1600
Query: 318 EESDNIAEDFLEGKMEID 335
E K+E+D
Sbjct: 1601 ERKQRSMAVAARKKLEMD 1618
Score = 33.5 bits (75), Expect = 0.32
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 215 SQLTDMNEQEEVLLEQFLTLP-QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVL 273
SQL D E + Q L+L +LKQ+ +K+ + +EE LE + V
Sbjct: 1308 SQLQDTQELLQEENRQKLSLSTKLKQVEDEKNSFREQLEEEEEAKHNLEKQIATLHAQVA 1367
Query: 274 DKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKME 333
D + + E + + +L + + + KVAA++ E++ + E
Sbjct: 1368 DMKKKMEDSVGCLETAEEVKRKLQKDLEGLSQRHEEKVAAYDKLEKTKTRLQ------QE 1421
Query: 334 IDDFLSSFMEKRTICHCRRAKEEKLQQAIA 363
+DD L +R K++K Q +A
Sbjct: 1422 LDDLLVDLDHQRQSACNLEKKQKKFDQLLA 1451
Score = 30.0 bits (66), Expect = 3.5
Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 215 SQLTDMNEQEEVLLEQFLTLP-QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVL 273
+ + N+ + ++Q L Q+K + + DD S EE+ + E L++ ++
Sbjct: 1624 AHIDSANKNRDEAIKQLRKLQAQMKDCMRELDDTRASREEILAQAKENEKKLKSMEAEMI 1683
Query: 274 DKYELLTQMKSTFEKKMQRQHELSESCSASA------------LQARLKVAAHEAEEESD 321
E L + + Q + EL++ + S+ L+AR+ E EEE
Sbjct: 1684 QLQEELAAAERAKRQAQQERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQG 1743
Query: 322 N---IAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQ 359
N I + + ++ID + +R+ H ++ + + Q
Sbjct: 1744 NTELINDRLKKANLQIDQINTDLNLERS--HAQKNENARQQ 1782
>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
Length = 783
Score = 37.0 bits (84), Expect = 0.029
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 209 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAK 268
L E++ SQ +Q+E LL+Q L+ D+ VKS +EL+ K L+ EA
Sbjct: 430 LLEMTCSQQQSRIQQQEALLKQ------LENEKRKYDEHVKSNQELSEKLSKLQQEKEAL 483
Query: 269 RQTVLDKYELL-TQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDF 327
R+ L +LL +++ EK Q++ +L + + L+ E+ I +
Sbjct: 484 REEYLRLLKLLNVHVRNYNEKHHQQKVKLQKVKYRLTNEVELRDKRINQFEDEIGILQHK 543
Query: 328 LEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHS 366
+E + I D +++ + R+ +E+ ++Q +HS
Sbjct: 544 IEKEKAIQDQITA-QNDTLLLEKRKLQEQVIEQEQLIHS 581
Score = 29.6 bits (65), Expect = 4.6
Identities = 26/148 (17%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
Query: 216 QLTDMNEQEEVLLEQFLTLPQLKQIITDK-DDLVKSIEELARKNLLLEPSLEAKRQTVLD 274
++ + + E + +Q+ Q ++++ D+L + + L K LLE + ++ +
Sbjct: 385 KIKEATQNEAKVKQQYQEEQQKRKLLYQNVDELHRQVRTLQDKENLLEMTCSQQQSRIQQ 444
Query: 275 KYELLTQMKS---TFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
+ LL Q+++ +++ ++ ELSE S + ++E + + E++L
Sbjct: 445 QEALLKQLENEKRKYDEHVKSNQELSEKLS-------------KLQQEKEALREEYLRLL 491
Query: 332 MEIDDFLSSFMEKRTICHCRRAKEEKLQ 359
++ + ++ EK H ++ K +K++
Sbjct: 492 KLLNVHVRNYNEKH---HQQKVKLQKVK 516
>gi|42490753 TEA domain family member 3 [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.037
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 66 MDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS-GMSP 124
M + S L N F+ S L + + S FW +PP+L PS + P
Sbjct: 129 MSSAQIVSASVLQNKFSPPSPLPQAVFSTSSRFWSSPPLLGQ--------QPGPSQDIKP 180
Query: 125 YASQGFPFLPPYPP 138
+A +P PP PP
Sbjct: 181 FAQPAYPIQPPLPP 194
>gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens]
Length = 914
Score = 36.2 bits (82), Expect = 0.049
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 202 VPDAFPELSELSVSQLTDMNEQ-----EEVLLEQFLTLPQLKQIITDKDDLVKSIEELAR 256
V D EL E + +Q++ M E+ +E++ Q L QI+ + L + + E
Sbjct: 249 VSDCVKELRETN-AQMSRMTEELSGKSDELIRYQEELSSLLSQIVDLQHKLKEHVIEKEE 307
Query: 257 KNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEA 316
L L+ S +A+RQ ++ +EL + + Q E+ E S S A L +
Sbjct: 308 LKLHLQASKDAQRQLTMELHELQDRNMECLGMLHESQEEIKELRSRSGPTAHLYFSQSYG 367
Query: 317 EEESDNIA---EDFLEGKMEIDDFLSSFMEK 344
+++A E + K+ +D+ S F +K
Sbjct: 368 AFTGESLAAEIEGTMRKKLSLDEESSLFKQK 398
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.064
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 106 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 161
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 162 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 218
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 219 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 278
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 279 LTQMKSTFEKKMQRQ 293
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.064
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 106 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 161
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 162 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 218
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 219 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 278
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 279 LTQMKSTFEKKMQRQ 293
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.064
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 106 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 161
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 162 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 218
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 219 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 278
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 279 LTQMKSTFEKKMQRQ 293
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.064
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 106 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 161
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 162 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 218
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 219 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 278
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 279 LTQMKSTFEKKMQRQ 293
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 35.4 bits (80), Expect = 0.083
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 238 KQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE-- 295
K++ T K+D ++ EELAR EA+R+ + +K L Q K+ + ++Q + E
Sbjct: 851 KEMATMKEDFERTKEELARS--------EARRKELEEKMVSLLQEKNDLQLQVQSETENL 902
Query: 296 --LSESC-----SASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTIC 348
E C S L+A++K EEE + + + + K ++D SS
Sbjct: 903 MDAEERCEGLIKSKILLEAKVKELTERLEEE-EEMNSELVAKKRNLEDKCSSLKRDIDDL 961
Query: 349 HCRRAKEEKLQQA 361
K EK + A
Sbjct: 962 ELTLTKVEKEKHA 974
Score = 29.3 bits (64), Expect = 6.0
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 216 QLTDMNEQEEVLLEQFLTLPQLKQIIT-DKDDLVKSIEELARKNLLLEPSLEAKRQTVLD 274
+++D+ EQ + + K+++ +K DL ++EE+ E SLE + +L
Sbjct: 1512 EISDLTEQIAETGKNLQEAEKTKKLVEQEKSDLQVALEEV-------EGSLEHEESKILR 1564
Query: 275 KYELLTQMKSTFEKK-MQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKME 333
L+Q+KS ++K +++ E+ + S A + +AE S N A L+ KME
Sbjct: 1565 VQLELSQVKSELDRKVIEKDEEIEQLKRNSQRAAEALQSVLDAEIRSRNDALR-LKKKME 1623
Query: 334 ID 335
D
Sbjct: 1624 GD 1625
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 220 MNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSL-EAKRQT---VLDK 275
+ E+E ++ E+ +L+ + D+ DL + ++ L+ LLE SL EA++Q + K
Sbjct: 728 VQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTK 787
Query: 276 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 335
+L Q+++ + K Q E+ L+ L +AE+E D A + + E
Sbjct: 788 GQLEVQIQTVTQAKEVIQGEV------RCLKLELDTERSQAEQERDAAARQLAQAEQE-- 839
Query: 336 DFLSSFMEKRTICHCRRAKE--EKLQQAIAMHSQ 367
+ +E++ H + + EK ++ + H Q
Sbjct: 840 --GKTALEQQKAAHEKEVNQLREKWEKERSWHQQ 871
>gi|169213954 PREDICTED: similar to hCG2040171 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 100 KNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPP--YPPQEANRSITSLSVADTVSSS 157
K P +L P AFP P +PY + FP LPP YPP + S S+ SS
Sbjct: 212 KPPGLLGPYGRAFP---EYPWNFNPYLTGPFPKLPPSLYPPHFYPNPLAS-SLGHLPSSG 267
Query: 158 TTSHTTAKPAAPSFG 172
TA P S G
Sbjct: 268 AGGGPTATPLLASTG 282
>gi|239751793 PREDICTED: similar to hCG2040171 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 100 KNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPP--YPPQEANRSITSLSVADTVSSS 157
K P +L P AFP P +PY + FP LPP YPP + S S+ SS
Sbjct: 212 KPPGLLGPYGRAFP---EYPWNFNPYLTGPFPKLPPSLYPPHFYPNPLAS-SLGHLPSSG 267
Query: 158 TTSHTTAKPAAPSFG 172
TA P S G
Sbjct: 268 AGGGPTATPLLASTG 282
>gi|239746284 PREDICTED: similar to hCG2040171 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 100 KNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPP--YPPQEANRSITSLSVADTVSSS 157
K P +L P AFP P +PY + FP LPP YPP + S S+ SS
Sbjct: 212 KPPGLLGPYGRAFP---EYPWNFNPYLTGPFPKLPPSLYPPHFYPNPLAS-SLGHLPSSG 267
Query: 158 TTSHTTAKPAAPSFG 172
TA P S G
Sbjct: 268 AGGGPTATPLLASTG 282
>gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo
sapiens]
Length = 434
Score = 35.0 bits (79), Expect = 0.11
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 209 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAK 268
+S L+ Q + EQEE L EQ LP+ ++ + + S +EL +N S+
Sbjct: 127 ISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNEN----KSVLQL 182
Query: 269 RQTVLDKYELLTQMKST--FEKKMQRQHELSESCSASALQARLKVAAH------EAEEES 320
Q V + E L ++K T E Q++ +L+ S AL H EA
Sbjct: 183 EQQVKELQEKLGKVKETERLEAASQQKQQLTAQLSLMALPGEGDGGGHLDSEGKEAPRPI 242
Query: 321 DNIAEDFLEGKMEIDDFLSSFMEK 344
+I +D LE + + F+ EK
Sbjct: 243 PSIPQD-LESREAMSGFMDHLEEK 265
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 34.7 bits (78), Expect = 0.14
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 213 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTV 272
+ SQ+ E L Q L+ ++ + + +K + V+ E+ + LE A + V
Sbjct: 379 ATSQVESKQNAELAKLRQELS--KVSKELVEKSEAVRQDEQQRKA---LEAKAAAFEKQV 433
Query: 273 LDKYELLTQMKSTFEKKMQRQHELS-ESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
L +L + + E +R E+S E C + A L+ A +A+E+ +AE L K
Sbjct: 434 L---QLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE--LHSK 488
Query: 332 MEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQ 367
++ SS E R+ C +LQ+A A +SQ
Sbjct: 489 LQ-----SSEAEVRSKCEELSGLHGQLQEARAENSQ 519
Score = 29.6 bits (65), Expect = 4.6
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 37/167 (22%)
Query: 207 PELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKD----DLVKSIEELAR----KN 258
P +E S + + E EE Q + I+ + + DL KS+EE + K
Sbjct: 668 PAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 727
Query: 259 LLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQ-RQH------ELSESCSASAL------ 305
E L+ R TV E++ ++K E Q R+H EL + +A++
Sbjct: 728 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 787
Query: 306 -------------QARLKVAAHEAEEESDNIA---EDFLEGKMEIDD 336
Q++L A EA+++SD +A + E K ++D
Sbjct: 788 KEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED 834
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 34.7 bits (78), Expect = 0.14
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 213 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTV 272
+ SQ+ E L Q L+ ++ + + +K + V+ E+ + LE A + V
Sbjct: 379 ATSQVESKQNAELAKLRQELS--KVSKELVEKSEAVRQDEQQRKA---LEAKAAAFEKQV 433
Query: 273 LDKYELLTQMKSTFEKKMQRQHELS-ESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 331
L +L + + E +R E+S E C + A L+ A +A+E+ +AE L K
Sbjct: 434 L---QLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE--LHSK 488
Query: 332 MEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQ 367
++ SS E R+ C +LQ+A A +SQ
Sbjct: 489 LQ-----SSEAEVRSKCEELSGLHGQLQEARAENSQ 519
Score = 29.6 bits (65), Expect = 4.6
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 37/167 (22%)
Query: 207 PELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKD----DLVKSIEELAR----KN 258
P +E S + + E EE Q + I+ + + DL KS+EE + K
Sbjct: 668 PAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 727
Query: 259 LLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQ-RQH------ELSESCSASAL------ 305
E L+ R TV E++ ++K E Q R+H EL + +A++
Sbjct: 728 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 787
Query: 306 -------------QARLKVAAHEAEEESDNIA---EDFLEGKMEIDD 336
Q++L A EA+++SD +A + E K ++D
Sbjct: 788 KEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED 834
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,794,555
Number of Sequences: 37866
Number of extensions: 705122
Number of successful extensions: 3532
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 3105
Number of HSP's gapped (non-prelim): 611
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.