Guide to the Human Genome
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Name: LOC390937 Sequence: fasta or formatted (354aa) NCBI GI: 169213954
Description:

PREDICTED: similar to hCG2040171

Referenced in:

Ets Family

Other entries for this name:
alt mRNA [354aa] PREDICTED: similar to hCG2040171
alt mRNA [354aa] PREDICTED: similar to hCG2040171
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         32           4
 C cysteine            1.1          4           1
 D aspartate           4.5         16           1
 E glutamate           5.1         18           2
 F phenylalanine       4.8         17           1
 G glycine            11.3         40           3
 H histidine           1.4          5           1
 I isoleucine          2.0          7           1
 K lysine              5.4         19           1
 L leucine            12.1         43           3
 M methionine          0.8          3           1
 N asparagine          2.0          7           1
 P proline            13.6         48           2
 Q glutamine           1.7          6           1
 R arginine            3.7         13           1
 S serine              8.2         29           2
 T threonine           5.1         18           1
 V valine              2.3          8           2
 W tryptophan          1.7          6           1
 Y tyrosine            4.2         15           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040171 
LOC390937             1.000   PREDICTED: similar to hCG2040171 
LOC390937             1.000   PREDICTED: similar to hCG2040171 
ERF                   0.326   Ets2 repressor factor 
ETV3L                 0.315   ets variant 3-like 
ETV3                  0.264   ets variant gene 3 isoform 1 
ETV3                  0.260   ets variant gene 3 isoform 2 
FEV                   0.143   FEV (ETS oncogene family) 
ERG                   0.138   ets-related isoform 4 
ERG                   0.138   ets-related isoform 2 
ERG                   0.138   ets-related isoform 1 
ERG                   0.138   ets-related isoform 3 
FLI1                  0.135   Friend leukemia virus integration 1 
ETS2                  0.128   v-ets erythroblastosis virus E26 oncogene homolog 2 [...
ETS1                  0.126   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS1                  0.126   v-ets erythroblastosis virus E26 oncogene homolog 1 i...
ETS1                  0.126   v-ets erythroblastosis virus E26 oncogene homolog 1...
GABPA                 0.115   GA binding protein transcription factor, alpha subun...
ELK4                  0.111   ELK4 protein isoform b 
ELK4                  0.111   ELK4 protein isoform a 
ELK3                  0.104   ELK3 protein 
ELK1                  0.103   ELK1 protein 
ELK1                  0.103   ELK1 protein 
ETV2                  0.103   ets variant gene 2 
ETV4                  0.099   ets variant gene 4 (E1A enhancer binding protein, E...
ETV4                  0.099   ets variant gene 4 (E1A enhancer binding protein, E1...
ETV1                  0.097   ets variant gene 1 isoform f 
ETV1                  0.097   ets variant gene 1 isoform e 
ETV1                  0.097   ets variant gene 1 isoform d 
ETV1                  0.097   ets variant gene 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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