Guide to the Human Genome
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Name: VPS37B Sequence: fasta or formatted (285aa) NCBI GI: 13375926
Description:

vacuolar protein sorting 37B

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         27           2
 C cysteine            0.4          1           1
 D aspartate           2.5          7           1
 E glutamate           7.7         22           2
 F phenylalanine       2.8          8           1
 G glycine             5.3         15           1
 H histidine           0.7          2           1
 I isoleucine          2.1          6           1
 K lysine              4.9         14           2
 L leucine            14.4         41           2
 M methionine          2.8          8           1
 N asparagine          2.1          6           1
 P proline            14.4         41           6
 Q glutamine           8.8         25           2
 R arginine            5.3         15           2
 S serine              5.6         16           3
 T threonine           4.2         12           1
 V valine              4.2         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 37B 
VPS37C                0.260   vacuolar protein sorting 37C 
VPS37D                0.188   vacuolar protein sorting 37D 
VPS37A                0.116   hepatocellular carcinoma related protein 1 isoform ...
VPS37A                0.116   hepatocellular carcinoma related protein 1 isoform ...
DIAPH1                0.076   diaphanous 1 isoform 2 
DIAPH1                0.076   diaphanous 1 isoform 1 
PRR12                 0.070   proline rich 12 
FMN2                  0.068   formin 2 
FMNL1                 0.063   formin-like 1 
WASF2                 0.061   WAS protein family, member 2 
RAPH1                 0.057   Ras association and pleckstrin homology domains 1 is...
FMN1                  0.055   formin 1 
ENAH                  0.055   enabled homolog isoform a 
ENAH                  0.055   enabled homolog isoform b 
SFRS15                0.055   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.055   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.055   splicing factor, arginine/serine-rich 15 isoform 1 [...
WASL                  0.055   Wiskott-Aldrich syndrome gene-like protein 
INF2                  0.055   inverted formin 2 isoform 2 
INF2                  0.055   inverted formin 2 isoform 1 
SAMD1                 0.055   sterile alpha motif domain containing 1 
BRD4                  0.053   bromodomain-containing protein 4 isoform long 
WIPF3                 0.053   WAS/WASL interacting protein family, member 3 [Homo...
ESX1                  0.053   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
CPSF6                 0.053   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.053   PREDICTED: hypothetical protein FLJ22184 
BAT2                  0.053   HLA-B associated transcript-2 
FLJ22184              0.052   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.052   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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