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Search of human proteins with 223555919
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223555919 hepatocellular carcinoma related protein 1 isoform
1 [Homo sapiens]
(397 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223555919 hepatocellular carcinoma related protein 1 isoform ... 785 0.0
gi|223555921 hepatocellular carcinoma related protein 1 isoform ... 721 0.0
gi|13375926 vacuolar protein sorting 37B [Homo sapiens] 88 2e-17
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 79 7e-15
gi|117938318 vacuolar protein sorting 37D [Homo sapiens] 74 2e-13
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 44 3e-04
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 44 3e-04
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 39 0.011
gi|118498356 kinectin 1 isoform a [Homo sapiens] 38 0.018
gi|118498368 kinectin 1 isoform c [Homo sapiens] 38 0.018
gi|33620775 kinectin 1 isoform a [Homo sapiens] 38 0.018
gi|156119615 myosin IXA [Homo sapiens] 38 0.018
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 38 0.018
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 37 0.024
gi|124249396 coiled-coil domain containing 30 [Homo sapiens] 37 0.031
gi|42490753 TEA domain family member 3 [Homo sapiens] 37 0.041
gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens] 36 0.053
gi|24497609 nucleoporin 62kDa [Homo sapiens] 36 0.070
gi|24497607 nucleoporin 62kDa [Homo sapiens] 36 0.070
gi|24497605 nucleoporin 62kDa [Homo sapiens] 36 0.070
gi|24497603 nucleoporin 62kDa [Homo sapiens] 36 0.070
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 35 0.091
gi|21735548 centrosomal protein 2 [Homo sapiens] 35 0.12
gi|169213954 PREDICTED: similar to hCG2040171 [Homo sapiens] 35 0.12
gi|239751793 PREDICTED: similar to hCG2040171 [Homo sapiens] 35 0.12
gi|239746284 PREDICTED: similar to hCG2040171 [Homo sapiens] 35 0.12
gi|153792110 HEG homolog 1 [Homo sapiens] 35 0.12
gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi... 35 0.12
gi|110611218 ribosome binding protein 1 [Homo sapiens] 35 0.16
gi|110611220 ribosome binding protein 1 [Homo sapiens] 35 0.16
>gi|223555919 hepatocellular carcinoma related protein 1 isoform 1
[Homo sapiens]
Length = 397
Score = 785 bits (2027), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINN 60
MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINN
Sbjct: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINN 60
Query: 61 LTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL 120
LTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL
Sbjct: 61 LTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL 120
Query: 121 DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS 180
DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS
Sbjct: 121 DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS 180
Query: 181 SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS
Sbjct: 181 SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
Query: 241 QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK 300
QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK
Sbjct: 241 QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK 300
Query: 301 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 360
YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID
Sbjct: 301 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 360
Query: 361 DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 397
DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL
Sbjct: 361 DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 397
>gi|223555921 hepatocellular carcinoma related protein 1 isoform 2
[Homo sapiens]
Length = 372
Score = 721 bits (1861), Expect = 0.0
Identities = 371/397 (93%), Positives = 371/397 (93%), Gaps = 25/397 (6%)
Query: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINN 60
MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHS
Sbjct: 1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSR------------------ 42
Query: 61 LTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL 120
LLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL
Sbjct: 43 -------LLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLL 95
Query: 121 DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS 180
DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS
Sbjct: 96 DEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVS 155
Query: 181 SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS
Sbjct: 156 SSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 215
Query: 241 QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK 300
QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK
Sbjct: 216 QLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDK 275
Query: 301 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 360
YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID
Sbjct: 276 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 335
Query: 361 DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 397
DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL
Sbjct: 336 DFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAPL 372
>gi|13375926 vacuolar protein sorting 37B [Homo sapiens]
Length = 285
Score = 87.8 bits (216), Expect = 2e-17
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 237 LSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQT 296
LS+ QL ++ E E L E + + + + +K+ + S LA NLL +P L+ +
Sbjct: 13 LSLVQLNELLEDEGQLTEMVQKMEETQNVQLNKEMTLASNRSLAEGNLLYQPQLDTLKAR 72
Query: 297 VLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
+ KY+ L + ++ K + S S S L A L+ + EE+++N+AE FL+G+
Sbjct: 73 LTQKYQELQVLFEAYQIKKTKLDRQSSSASLETLLALLQAEGAKIEEDTENMAEKFLDGE 132
Query: 357 MEIDDFLSSFMEKRTICHCRRAKEEKLQQAI 387
+ +D F+ + KR + H RR K EKLQ+ +
Sbjct: 133 LPLDSFIDVYQSKRKLAHMRRVKIEKLQEMV 163
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 79.0 bits (193), Expect = 7e-15
Identities = 40/154 (25%), Positives = 83/154 (53%)
Query: 234 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAK 293
L + ++ +L ++ E + + L P+++ + +++ + + LA +NL + LE
Sbjct: 4 LKDKTLQELEELQNDSEAIDQLALESPEVQDLQLEREMALATNRSLAERNLEFQGPLEIS 63
Query: 294 RQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFL 353
R + D+Y+ L ++ +++ + + S + L L+V + EEES+ +AE FL
Sbjct: 64 RSNLSDRYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEEESEAMAEKFL 123
Query: 354 EGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAI 387
EG++ ++ FL +F R + H RR + EKLQ+ +
Sbjct: 124 EGEVPLETFLENFSSMRMLSHLRRVRVEKLQEVV 157
>gi|117938318 vacuolar protein sorting 37D [Homo sapiens]
Length = 251
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 237 LSVSQLTDMNEQEEVLLEQFLTLPQLKQ-IITDKDDLVKSIEELARKNLLLEPSLEAKRQ 295
LS QL D+ Q+E L++ + L + Q + +++ + S LA++NL L P LE R
Sbjct: 22 LSTGQLRDLL-QDEPKLDRIVRLSRKFQGLQLEREACLASNYALAKENLALRPRLEMGRA 80
Query: 296 TVLDKYELLTQMKSTFEKKMQR----QHELSESCSASALQARLKVAAHEAEEESDNIAED 351
+ KY+ L ++ K+QR H S C+ LQA L+ A EAEE+ E
Sbjct: 81 ALAIKYQELREVAENCADKLQRLEESMHRWSPHCALGWLQAELEEAEQEAEEQM----EQ 136
Query: 352 FLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQFHAP 396
L G+ ++ FL +F R + H RR + EKLQ+ + + P
Sbjct: 137 LLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQELLRRRERSAQP 181
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 43.9 bits (102), Expect = 3e-04
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 49/265 (18%)
Query: 54 LPFTINNLTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTS------PLVNNFT 107
+P+ N I I + L +P P+ V P + K G +V + P ++ +
Sbjct: 61 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPT--SSMTIKTGKHVDANGKIYLPYLHEWK 118
Query: 108 M-HSDLGKIIQSLLDEFWKNPPVLA-PTSTAFP-----------YLYSNPSGMSPYASQG 154
SDL +IQ ++ F PPV + P S ++P Y+ P G+SPY S G
Sbjct: 119 HPQSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPS-G 177
Query: 155 FPFLP------PYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPT 208
+P P PYPP ++T+S ++P + G + + T
Sbjct: 178 YPPNPSGYPGCPYPP------------GGPYPATTSSQYPSQPPVTTVGPSRDGTISEDT 225
Query: 209 VDAS-IPTSQNGFGYKMPDVPD-AFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQII 266
+ AS I + ++M + D A EL+ L ++ D+ + + L E + +L Q +
Sbjct: 226 IRASLISAVSDKLRWRMKEEMDRAQAELNALKRTE-EDLKKGHQKLEEM---VTRLDQEV 281
Query: 267 TDKDDLVKSIEELARKNLLLEPSLE 291
+ D K+IE L +K+ L +LE
Sbjct: 282 AEVD---KNIELLKKKDEELSSALE 303
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 43.5 bits (101), Expect = 3e-04
Identities = 84/370 (22%), Positives = 143/370 (38%), Gaps = 75/370 (20%)
Query: 6 PLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRL----------- 54
P + S S SA +P GL L + SL + ++ +E+Q ++ +L
Sbjct: 133 PNSNSTSGSATSNPFGLGGLGGLAG--LSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIM 190
Query: 55 --PFTINNLTININIL--LPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHS 110
PF + ++ N +++ L PQ + +I P I H L + + T L N M
Sbjct: 191 ENPF-VQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQ 249
Query: 111 DLGKIIQSLLDEFWKNP---------------PVLAPTSTAF---PY--LYSNPS---GM 147
++ + L P P+L+ F P+ L SN S G
Sbjct: 250 EMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGS 309
Query: 148 SPYASQGFPFLP-PYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPI 206
P ++ LP P+ PQ + S S A TV TT A+ + G + P +
Sbjct: 310 QPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGG-----TTGSTASGTSGQSTTAPNLV 364
Query: 207 PTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQII 266
P V AS+ + P + +++E N Q L++ L+ P ++ ++
Sbjct: 365 PGVGASM--------FNTPGMQSLLQQITE---------NPQ---LMQNMLSAPYMRSMM 404
Query: 267 TDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCS 326
+ +LA + +L P Q E + Q TF ++MQ LS +
Sbjct: 405 QS----LSQNPDLAAQMMLNNPLFAGNPQL----QEQMRQQLPTFLQQMQNPDTLSAMSN 456
Query: 327 ASALQARLKV 336
A+QA L++
Sbjct: 457 PRAMQALLQI 466
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 38.5 bits (88), Expect = 0.011
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 128 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 187
P +PTS A Y +P G +P + P P Y P + S TS + + T S + +
Sbjct: 1591 PSYSPTSPA--YEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648
Query: 188 TAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
+ P +PS+ S P PT + PTS + + P P S S S
Sbjct: 1649 SYSPTSPSYSPTS--PSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1698
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 128 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 187
P +PTS + Y ++PS SP + P P Y P + S TS S + T S + +
Sbjct: 1634 PNYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1690
Query: 188 TAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
+ P +PS+ S P PT + PTS + + P P S S S
Sbjct: 1691 SYSPTSPSYSPTS--PSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1740
Score = 33.5 bits (75), Expect = 0.35
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 128 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 187
P +PTS + Y ++PS SP + P P Y P + S TS S + T S + +
Sbjct: 1676 PSYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1732
Query: 188 TAKPAAPSFGVLS-----NLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVS 240
+ P +PS+ S P PT + PTS + + P+ P S S S
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPS-YSPTSPNYTPTSPNYSPTSPS 1789
Score = 32.3 bits (72), Expect = 0.77
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 128 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 187
P +PTS + Y ++PS SP + P P Y P + S TS S + T + T +
Sbjct: 1725 PSYSPTSPS--YSPTSPS-YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1781
Query: 188 TAKPAAPSFGVLSNLPLPIPTVDASIPTS 216
P +PS+ S P PT + P+S
Sbjct: 1782 NYSPTSPSYSPTS--PSYSPTSPSYSPSS 1808
Score = 32.0 bits (71), Expect = 1.0
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 128 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 187
P +PTS Y ++PS SP + + P P Y P S TS + T S T S T
Sbjct: 1830 PSYSPTSPK--YTPTSPS-YSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPT--SPTYSPT 1884
Query: 188 TAK--PAAPSFGVLSNLPLPIPTVDASIPTS 216
T K P +P++ S P+ PT PTS
Sbjct: 1885 TPKYSPTSPTYSPTS--PVYTPTSPKYSPTS 1913
Score = 31.6 bits (70), Expect = 1.3
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 122 EFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSS 181
E+ P +PTS + SP + + P P Y P S TS + + T
Sbjct: 1852 EYTPTSPKYSPTSPKY----------SPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPV 1901
Query: 182 STTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYK--MPDVPDAFPELSELSV 239
T + P +P++ S P PT PTS G Y P P S S
Sbjct: 1902 YTPTSPKYSPTSPTYSPTS--PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959
Query: 240 SQLTDMNEQE 249
+ D +++E
Sbjct: 1960 AISPDDSDEE 1969
Score = 30.0 bits (66), Expect = 3.8
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 128 PVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHT 187
P PTS + Y ++PS SP + P P Y P + S TS S + T S + S
Sbjct: 1753 PNYTPTSPS--YSPTSPS-YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSP 1809
Query: 188 TAKPAAPSFGVLS-----NLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELS 238
P +P++ S + P PT PTS + + P+ P+ S S
Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPS-YSPSSPEYTPTSPKYSPTS 1864
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.7 bits (86), Expect = 0.018
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 261 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLD-KYELLTQMKSTFEKKMQRQH 319
+LK++I +KD +KS+EEL LL + K +TV D K E+ + ++++
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELL---KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Query: 320 ELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
+LS + LQ LK +EE N + LE K
Sbjct: 855 QLSITSKVQELQNLLK-----GKEEQMNTMKAVLEEK 886
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 261 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE 320
Q+++ I +KD+ +K++EEL L+ + E + + + LT+ + K
Sbjct: 732 QMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ----- 786
Query: 321 LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKM 357
++ S ++L LK HE + + ++ E+ LE ++
Sbjct: 787 -NDQVSFASLVEELKKVIHEKDGKIKSV-EELLEAEL 821
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 37.7 bits (86), Expect = 0.018
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 261 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLD-KYELLTQMKSTFEKKMQRQH 319
+LK++I +KD +KS+EEL LL + K +TV D K E+ + ++++
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELL---KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Query: 320 ELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
+LS + LQ LK +EE N + LE K
Sbjct: 855 QLSITSKVQELQNLLK-----GKEEQMNTMKAVLEEK 886
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 261 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE 320
Q+++ I +KD+ +K++EEL L+ + E + + + LT+ + K
Sbjct: 732 QMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ----- 786
Query: 321 LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKM 357
++ S ++L LK HE + + ++ E+ LE ++
Sbjct: 787 -NDQVSFASLVEELKKVIHEKDGKIKSV-EELLEAEL 821
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.7 bits (86), Expect = 0.018
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 261 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLD-KYELLTQMKSTFEKKMQRQH 319
+LK++I +KD +KS+EEL LL + K +TV D K E+ + ++++
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELL---KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Query: 320 ELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
+LS + LQ LK +EE N + LE K
Sbjct: 855 QLSITSKVQELQNLLK-----GKEEQMNTMKAVLEEK 886
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 261 QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE 320
Q+++ I +KD+ +K++EEL L+ + E + + + LT+ + K
Sbjct: 732 QMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ----- 786
Query: 321 LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKM 357
++ S ++L LK HE + + ++ E+ LE ++
Sbjct: 787 -NDQVSFASLVEELKKVIHEKDGKIKSV-EELLEAEL 821
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 37.7 bits (86), Expect = 0.018
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 223 KMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDK-DDLVKSIEELAR 281
++P V D E + TD+ EQ++ ++ Q ++++T++ ++L K EEL
Sbjct: 2299 RLPSVSDVSEETLTSEAAMETDITEQQQAAMQ------QEERVLTEQIENLQKEKEELTF 2352
Query: 282 KNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVA 337
+ L+LEP A L+ + S+ M+ ++ +SE S + LK A
Sbjct: 2353 EMLVLEP--RASDDETLESEASIGTADSSENLNMESEYAISEKSERSLALSSLKTA 2406
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 37.7 bits (86), Expect = 0.018
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 244 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 303
D+ E+E ++L+ L + ++ + D VK+ ++L K L L+ + + D L
Sbjct: 1146 DILEKESIILKLERNLKEFQEHLQDS---VKNTKDLNVKELKLKEEITQLTNNLQDMKHL 1202
Query: 304 LTQMKSTFEKKMQRQHELSESCSASALQAR-LKVAAHEAEEESDNIAEDFLEGKMEI 359
L + E Q +L E SAS+ + + LK EE+ ++ E + K +I
Sbjct: 1203 LQLKEEEEETNRQETEKLKEELSASSARTQNLKADLQRKEEDYADLKEKLTDAKKQI 1259
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 37.4 bits (85), Expect = 0.024
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 238 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTV 297
++ + + + E L +QF T +++ +++ KDD+ KS+ EL + LE +E + +T
Sbjct: 1484 ALEEAMEQKAELERLNKQFRT--EMEDLMSSKDDVGKSVHELEKSKRALEQQVE-EMKTQ 1540
Query: 298 LDKYE---------------LLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAE 342
L++ E L MK+ FE+ +Q + E SE ++ ++ A +
Sbjct: 1541 LEELEDELQATEDAKLRLEVNLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREMEAELED 1600
Query: 343 EESDNIAEDFLEGKMEID 360
E K+E+D
Sbjct: 1601 ERKQRSMAVAARKKLEMD 1618
Score = 33.5 bits (75), Expect = 0.35
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 240 SQLTDMNEQEEVLLEQFLTLP-QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVL 298
SQL D E + Q L+L +LKQ+ +K+ + +EE LE + V
Sbjct: 1308 SQLQDTQELLQEENRQKLSLSTKLKQVEDEKNSFREQLEEEEEAKHNLEKQIATLHAQVA 1367
Query: 299 DKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKME 358
D + + E + + +L + + + KVAA++ E++ + E
Sbjct: 1368 DMKKKMEDSVGCLETAEEVKRKLQKDLEGLSQRHEEKVAAYDKLEKTKTRLQ------QE 1421
Query: 359 IDDFLSSFMEKRTICHCRRAKEEKLQQAIA 388
+DD L +R K++K Q +A
Sbjct: 1422 LDDLLVDLDHQRQSACNLEKKQKKFDQLLA 1451
Score = 30.0 bits (66), Expect = 3.8
Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 240 SQLTDMNEQEEVLLEQFLTLP-QLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVL 298
+ + N+ + ++Q L Q+K + + DD S EE+ + E L++ ++
Sbjct: 1624 AHIDSANKNRDEAIKQLRKLQAQMKDCMRELDDTRASREEILAQAKENEKKLKSMEAEMI 1683
Query: 299 DKYELLTQMKSTFEKKMQRQHELSESCSASA------------LQARLKVAAHEAEEESD 346
E L + + Q + EL++ + S+ L+AR+ E EEE
Sbjct: 1684 QLQEELAAAERAKRQAQQERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQG 1743
Query: 347 N---IAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQ 384
N I + + ++ID + +R+ H ++ + + Q
Sbjct: 1744 NTELINDRLKKANLQIDQINTDLNLERS--HAQKNENARQQ 1782
>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
Length = 783
Score = 37.0 bits (84), Expect = 0.031
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 234 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAK 293
L E++ SQ +Q+E LL+Q L+ D+ VKS +EL+ K L+ EA
Sbjct: 430 LLEMTCSQQQSRIQQQEALLKQ------LENEKRKYDEHVKSNQELSEKLSKLQQEKEAL 483
Query: 294 RQTVLDKYELL-TQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDF 352
R+ L +LL +++ EK Q++ +L + + L+ E+ I +
Sbjct: 484 REEYLRLLKLLNVHVRNYNEKHHQQKVKLQKVKYRLTNEVELRDKRINQFEDEIGILQHK 543
Query: 353 LEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHS 391
+E + I D +++ + R+ +E+ ++Q +HS
Sbjct: 544 IEKEKAIQDQITA-QNDTLLLEKRKLQEQVIEQEQLIHS 581
Score = 29.6 bits (65), Expect = 5.0
Identities = 26/148 (17%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
Query: 241 QLTDMNEQEEVLLEQFLTLPQLKQIITDK-DDLVKSIEELARKNLLLEPSLEAKRQTVLD 299
++ + + E + +Q+ Q ++++ D+L + + L K LLE + ++ +
Sbjct: 385 KIKEATQNEAKVKQQYQEEQQKRKLLYQNVDELHRQVRTLQDKENLLEMTCSQQQSRIQQ 444
Query: 300 KYELLTQMKS---TFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
+ LL Q+++ +++ ++ ELSE S + ++E + + E++L
Sbjct: 445 QEALLKQLENEKRKYDEHVKSNQELSEKLS-------------KLQQEKEALREEYLRLL 491
Query: 357 MEIDDFLSSFMEKRTICHCRRAKEEKLQ 384
++ + ++ EK H ++ K +K++
Sbjct: 492 KLLNVHVRNYNEKH---HQQKVKLQKVK 516
>gi|42490753 TEA domain family member 3 [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.041
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 91 MDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPS-GMSP 149
M + S L N F+ S L + + S FW +PP+L PS + P
Sbjct: 129 MSSAQIVSASVLQNKFSPPSPLPQAVFSTSSRFWSSPPLLGQ--------QPGPSQDIKP 180
Query: 150 YASQGFPFLPPYPP 163
+A +P PP PP
Sbjct: 181 FAQPAYPIQPPLPP 194
>gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens]
Length = 914
Score = 36.2 bits (82), Expect = 0.053
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 227 VPDAFPELSELSVSQLTDMNEQ-----EEVLLEQFLTLPQLKQIITDKDDLVKSIEELAR 281
V D EL E + +Q++ M E+ +E++ Q L QI+ + L + + E
Sbjct: 249 VSDCVKELRETN-AQMSRMTEELSGKSDELIRYQEELSSLLSQIVDLQHKLKEHVIEKEE 307
Query: 282 KNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEA 341
L L+ S +A+RQ ++ +EL + + Q E+ E S S A L +
Sbjct: 308 LKLHLQASKDAQRQLTMELHELQDRNMECLGMLHESQEEIKELRSRSGPTAHLYFSQSYG 367
Query: 342 EEESDNIA---EDFLEGKMEIDDFLSSFMEK 369
+++A E + K+ +D+ S F +K
Sbjct: 368 AFTGESLAAEIEGTMRKKLSLDEESSLFKQK 398
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.070
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 131 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 186
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 187 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 243
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 244 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 303
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 304 LTQMKSTFEKKMQRQ 318
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.070
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 131 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 186
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 187 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 243
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 244 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 303
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 304 LTQMKSTFEKKMQRQ 318
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.070
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 131 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 186
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 187 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 243
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 244 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 303
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 304 LTQMKSTFEKKMQRQ 318
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.070
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 131 APTSTAFPYLYS----NPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSH 186
APTS+A L +G +QGF P A+ + T+ S A T +++TTS
Sbjct: 228 APTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAP---GAASGTSTTTSTAATATATTTSS 284
Query: 187 TTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDA---FPELSELSVSQLT 243
++ A + L+ P IP+ A+ T+ G G + + +L L
Sbjct: 285 SSTTGFALNLKPLA--PAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSL 342
Query: 244 DMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYEL 303
++ +QE L+Q + + + + + + S+ K L + L+ + +L + +
Sbjct: 343 ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKE 402
Query: 304 LTQMKSTFEKKMQRQ 318
L + S E+ ++ Q
Sbjct: 403 LEDLLSPLEELVKEQ 417
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 35.4 bits (80), Expect = 0.091
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 263 KQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHE-- 320
K++ T K+D ++ EELAR EA+R+ + +K L Q K+ + ++Q + E
Sbjct: 851 KEMATMKEDFERTKEELARS--------EARRKELEEKMVSLLQEKNDLQLQVQSETENL 902
Query: 321 --LSESC-----SASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTIC 373
E C S L+A++K EEE + + + + K ++D SS
Sbjct: 903 MDAEERCEGLIKSKILLEAKVKELTERLEEE-EEMNSELVAKKRNLEDKCSSLKRDIDDL 961
Query: 374 HCRRAKEEKLQQA 386
K EK + A
Sbjct: 962 ELTLTKVEKEKHA 974
Score = 29.3 bits (64), Expect = 6.5
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 241 QLTDMNEQEEVLLEQFLTLPQLKQIIT-DKDDLVKSIEELARKNLLLEPSLEAKRQTVLD 299
+++D+ EQ + + K+++ +K DL ++EE+ E SLE + +L
Sbjct: 1512 EISDLTEQIAETGKNLQEAEKTKKLVEQEKSDLQVALEEV-------EGSLEHEESKILR 1564
Query: 300 KYELLTQMKSTFEKK-MQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKME 358
L+Q+KS ++K +++ E+ + S A + +AE S N A L+ KME
Sbjct: 1565 VQLELSQVKSELDRKVIEKDEEIEQLKRNSQRAAEALQSVLDAEIRSRNDALR-LKKKME 1623
Query: 359 ID 360
D
Sbjct: 1624 GD 1625
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 35.0 bits (79), Expect = 0.12
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 245 MNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSL-EAKRQT---VLDK 300
+ E+E ++ E+ +L+ + D+ DL + ++ L+ LLE SL EA++Q + K
Sbjct: 728 VQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLFEAQQQNSVIEVTK 787
Query: 301 YELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEID 360
+L Q+++ + K Q E+ L+ L +AE+E D A + + E
Sbjct: 788 GQLEVQIQTVTQAKEVIQGEV------RCLKLELDTERSQAEQERDAAARQLAQAEQE-- 839
Query: 361 DFLSSFMEKRTICHCRRAKE--EKLQQAIAMHSQ 392
+ +E++ H + + EK ++ + H Q
Sbjct: 840 --GKTALEQQKAAHEKEVNQLREKWEKERSWHQQ 871
>gi|169213954 PREDICTED: similar to hCG2040171 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 125 KNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPP--YPPQEANRSITSLSVADTVSSS 182
K P +L P AFP P +PY + FP LPP YPP + S S+ SS
Sbjct: 212 KPPGLLGPYGRAFP---EYPWNFNPYLTGPFPKLPPSLYPPHFYPNPLAS-SLGHLPSSG 267
Query: 183 TTSHTTAKPAAPSFG 197
TA P S G
Sbjct: 268 AGGGPTATPLLASTG 282
>gi|239751793 PREDICTED: similar to hCG2040171 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 125 KNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPP--YPPQEANRSITSLSVADTVSSS 182
K P +L P AFP P +PY + FP LPP YPP + S S+ SS
Sbjct: 212 KPPGLLGPYGRAFP---EYPWNFNPYLTGPFPKLPPSLYPPHFYPNPLAS-SLGHLPSSG 267
Query: 183 TTSHTTAKPAAPSFG 197
TA P S G
Sbjct: 268 AGGGPTATPLLASTG 282
>gi|239746284 PREDICTED: similar to hCG2040171 [Homo sapiens]
Length = 354
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 125 KNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPP--YPPQEANRSITSLSVADTVSSS 182
K P +L P AFP P +PY + FP LPP YPP + S S+ SS
Sbjct: 212 KPPGLLGPYGRAFP---EYPWNFNPYLTGPFPKLPPSLYPPHFYPNPLAS-SLGHLPSSG 267
Query: 183 TTSHTTAKPAAPSFG 197
TA P S G
Sbjct: 268 AGGGPTATPLLASTG 282
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 35.0 bits (79), Expect = 0.12
Identities = 71/360 (19%), Positives = 139/360 (38%), Gaps = 29/360 (8%)
Query: 8 TKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININI 67
+ S+SSS++G P L S+ Q L ++ +S+ ++ + P++ + + +++
Sbjct: 664 SSSSSSSSSGPPLPLPSVSQSHHLFSSILPSTRASVHLLKSTSDASTPWSSSPSPLPVSL 723
Query: 68 LLPPQFPQEK-----PVISVYPPIRHHLMDKQGVYVTSPLVNNFTM-HSDLGKIIQSLLD 121
P P S P + + TS + + TM HS ++S
Sbjct: 724 TTSTSAPLSVSQTTLPQSSSTPVLPRARETPVTSFQTSTMTSFMTMLHSSQTADLKSQST 783
Query: 122 EFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSI--TSLSVAD-T 178
+ T + P L S P+ + + P P +++ TS ++A +
Sbjct: 784 PHQEK----VITESKSPSLVSLPTESTKAVTTNSPLPPSLTESSTEQTLPATSTNLAQMS 839
Query: 179 VSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELS-EL 237
+ +TT T++P + G LS+ + A T+ P++ P++S E
Sbjct: 840 PTFTTTILKTSQPLMTTPGTLSSTASLVTGPIAVQTTAGKQLSLTHPEI--LVPQISTEG 897
Query: 238 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELAR-----KNLLLEPSLEA 292
+S E+ V+++ L L + T ++ + A ++L PS +
Sbjct: 898 GIS-----TERNRVIVDATTGLIPLTSVPTSAKEMTTKLGVTAEYSPASRSLGTSPSPQT 952
Query: 293 KRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDF 352
TV+ E L +TF + Q + S SAS + H E +DN + +
Sbjct: 953 ---TVVSTAEDLAPKSATFAVQSSTQSPTTVSSSASVNSCAVNPCLHNGECVADNTSRGY 1009
>gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo
sapiens]
Length = 434
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 234 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAK 293
+S L+ Q + EQEE L EQ LP+ ++ + + S +EL +N S+
Sbjct: 127 ISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQNSFKELNNEN----KSVLQL 182
Query: 294 RQTVLDKYELLTQMKST--FEKKMQRQHELSESCSASALQARLKVAAH------EAEEES 345
Q V + E L ++K T E Q++ +L+ S AL H EA
Sbjct: 183 EQQVKELQEKLGKVKETERLEAASQQKQQLTAQLSLMALPGEGDGGGHLDSEGKEAPRPI 242
Query: 346 DNIAEDFLEGKMEIDDFLSSFMEK 369
+I +D LE + + F+ EK
Sbjct: 243 PSIPQD-LESREAMSGFMDHLEEK 265
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 238 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTV 297
+ SQ+ E L Q L+ ++ + + +K + V+ E+ + LE A + V
Sbjct: 379 ATSQVESKQNAELAKLRQELS--KVSKELVEKSEAVRQDEQQRKA---LEAKAAAFEKQV 433
Query: 298 LDKYELLTQMKSTFEKKMQRQHELS-ESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
L +L + + E +R E+S E C + A L+ A +A+E+ +AE L K
Sbjct: 434 L---QLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE--LHSK 488
Query: 357 MEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQ 392
++ SS E R+ C +LQ+A A +SQ
Sbjct: 489 LQ-----SSEAEVRSKCEELSGLHGQLQEARAENSQ 519
Score = 29.6 bits (65), Expect = 5.0
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 37/167 (22%)
Query: 232 PELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKD----DLVKSIEELAR----KN 283
P +E S + + E EE Q + I+ + + DL KS+EE + K
Sbjct: 668 PAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 727
Query: 284 LLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQ-RQH------ELSESCSASAL------ 330
E L+ R TV E++ ++K E Q R+H EL + +A++
Sbjct: 728 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 787
Query: 331 -------------QARLKVAAHEAEEESDNIA---EDFLEGKMEIDD 361
Q++L A EA+++SD +A + E K ++D
Sbjct: 788 KEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED 834
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 238 SVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTV 297
+ SQ+ E L Q L+ ++ + + +K + V+ E+ + LE A + V
Sbjct: 379 ATSQVESKQNAELAKLRQELS--KVSKELVEKSEAVRQDEQQRKA---LEAKAAAFEKQV 433
Query: 298 LDKYELLTQMKSTFEKKMQRQHELS-ESCSASALQARLKVAAHEAEEESDNIAEDFLEGK 356
L +L + + E +R E+S E C + A L+ A +A+E+ +AE L K
Sbjct: 434 L---QLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE--LHSK 488
Query: 357 MEIDDFLSSFMEKRTICHCRRAKEEKLQQAIAMHSQ 392
++ SS E R+ C +LQ+A A +SQ
Sbjct: 489 LQ-----SSEAEVRSKCEELSGLHGQLQEARAENSQ 519
Score = 29.6 bits (65), Expect = 5.0
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 37/167 (22%)
Query: 232 PELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKD----DLVKSIEELAR----KN 283
P +E S + + E EE Q + I+ + + DL KS+EE + K
Sbjct: 668 PAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 727
Query: 284 LLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQ-RQH------ELSESCSASAL------ 330
E L+ R TV E++ ++K E Q R+H EL + +A++
Sbjct: 728 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 787
Query: 331 -------------QARLKVAAHEAEEESDNIA---EDFLEGKMEIDD 361
Q++L A EA+++SD +A + E K ++D
Sbjct: 788 KEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED 834
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,475,367
Number of Sequences: 37866
Number of extensions: 719400
Number of successful extensions: 3559
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 3124
Number of HSP's gapped (non-prelim): 614
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.