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Search of human proteins with 222537719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222537719 ATP binding domain 3 [Homo sapiens]
(348 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222537719 ATP binding domain 3 [Homo sapiens] 701 0.0
gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo ... 37 0.026
gi|61676108 cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [H... 37 0.026
gi|61676106 cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [H... 37 0.026
gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens] 34 0.22
gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens] 34 0.22
gi|154146199 sal-like 3 [Homo sapiens] 33 0.38
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 33 0.49
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 33 0.49
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 33 0.49
gi|61676082 shadow of prion protein [Homo sapiens] 32 0.65
gi|13994287 BTE-binding protein 4 [Homo sapiens] 32 1.1
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 32 1.1
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 32 1.1
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 32 1.1
gi|47132519 Ras association and pleckstrin homology domains 1 is... 31 1.4
gi|124249372 PRAME family member 12 [Homo sapiens] 31 1.4
gi|4504615 insulin-like growth factor binding protein 1 precurso... 31 1.9
gi|156105685 ATP-binding cassette, sub-family B, member 8 [Homo ... 31 1.9
gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens] 31 1.9
gi|169183867 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|89057646 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|89056946 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|223972648 t-SNARE domain containing 1 [Homo sapiens] 30 2.5
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 30 2.5
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 30 3.2
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 30 3.2
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 30 3.2
>gi|222537719 ATP binding domain 3 [Homo sapiens]
Length = 348
Score = 701 bits (1809), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASG 60
MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASG
Sbjct: 1 MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASG 60
Query: 61 GKDSTVLAHVLRALAPRLGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYED 120
GKDSTVLAHVLRALAPRLGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYED
Sbjct: 61 GKDSTVLAHVLRALAPRLGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYED 120
Query: 121 LFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRVGATHIVTGHNADDMAETV 180
LFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRVGATHIVTGHNADDMAETV
Sbjct: 121 LFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRVGATHIVTGHNADDMAETV 180
Query: 181 LMNFLRGDAGRLARGGGLGSPGEGGALPRCRPLQFASQKEVVLYAHFRRLDYFSEECVYA 240
LMNFLRGDAGRLARGGGLGSPGEGGALPRCRPLQFASQKEVVLYAHFRRLDYFSEECVYA
Sbjct: 181 LMNFLRGDAGRLARGGGLGSPGEGGALPRCRPLQFASQKEVVLYAHFRRLDYFSEECVYA 240
Query: 241 PEAFRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALASRALCQ 300
PEAFRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALASRALCQ
Sbjct: 241 PEAFRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALASRALCQ 300
Query: 301 ACALLDGLNRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASKAVPTF 348
ACALLDGLNRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASKAVPTF
Sbjct: 301 ACALLDGLNRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASKAVPTF 348
>gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo
sapiens]
Length = 248
Score = 37.0 bits (84), Expect = 0.026
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 6 CASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDST 65
C C A+ + +G A C CF A + + + RL+ PG V + SGG S+
Sbjct: 28 CVKCKEAQPVVVIR-AGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSS 86
Query: 66 -----VLAHVLRALAPRLGISLQLVAVDEGIG-----GYRDAALAAVRRQAARWELPLTV 115
VL + + A RL ++ VDEG R LA V+ P V
Sbjct: 87 SMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHV 146
Query: 116 VAYEDLF 122
VA E++F
Sbjct: 147 VALEEVF 153
>gi|61676108 cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [Homo
sapiens]
Length = 485
Score = 37.0 bits (84), Expect = 0.026
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 6 CASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDST 65
C C A+ + +G A C CF A + + + RL+ PG V + SGG S+
Sbjct: 28 CVKCKEAQPVVVIR-AGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSS 86
Query: 66 -----VLAHVLRALAPRLGISLQLVAVDEGIG-----GYRDAALAAVRRQAARWELPLTV 115
VL + + A RL ++ VDEG R LA V+ P V
Sbjct: 87 SMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHV 146
Query: 116 VAYEDLF 122
VA E++F
Sbjct: 147 VALEEVF 153
Score = 35.4 bits (80), Expect = 0.076
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 15/150 (10%)
Query: 150 LRRRALEEGARRVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGALPR 209
LR + AR G + ++TG + +A ++ N G LA G G +
Sbjct: 245 LRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVV- 303
Query: 210 CRPLQFASQKEVVLYAHFRRLDYFSEECVY-------APEAFRGHA--RDLLKRLEAARP 260
RP++ + KEV Y FS V+ APE H + RL+ P
Sbjct: 304 VRPMRDHTLKEVAFYNRL-----FSVPSVFTPAVDTKAPEKASIHRLMEAFILRLQTQFP 358
Query: 261 SAVLDLVHSAERLALAPAARPPRPGACSRC 290
S V + ++E+L P P + RC
Sbjct: 359 STVSTVYRTSEKLVKGPRDGPAAGDSGPRC 388
>gi|61676106 cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [Homo
sapiens]
Length = 515
Score = 37.0 bits (84), Expect = 0.026
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 6 CASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDST 65
C C A+ + +G A C CF A + + + RL+ PG V + SGG S+
Sbjct: 28 CVKCKEAQPVVVIR-AGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSS 86
Query: 66 -----VLAHVLRALAPRLGISLQLVAVDEGIG-----GYRDAALAAVRRQAARWELPLTV 115
VL + + A RL ++ VDEG R LA V+ P V
Sbjct: 87 SMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHV 146
Query: 116 VAYEDLF 122
VA E++F
Sbjct: 147 VALEEVF 153
Score = 35.4 bits (80), Expect = 0.076
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 15/150 (10%)
Query: 150 LRRRALEEGARRVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGALPR 209
LR + AR G + ++TG + +A ++ N G LA G G +
Sbjct: 245 LRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVV- 303
Query: 210 CRPLQFASQKEVVLYAHFRRLDYFSEECVY-------APEAFRGHA--RDLLKRLEAARP 260
RP++ + KEV Y FS V+ APE H + RL+ P
Sbjct: 304 VRPMRDHTLKEVAFYNRL-----FSVPSVFTPAVDTKAPEKASIHRLMEAFILRLQTQFP 358
Query: 261 SAVLDLVHSAERLALAPAARPPRPGACSRC 290
S V + ++E+L P P + RC
Sbjct: 359 STVSTVYRTSEKLVKGPRDGPAAGDSGPRC 388
>gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens]
Length = 856
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 160 RRVGATHIVTGHNADDMAETVLMNFLRGDAGRL----ARGGG-----LGSPGEGGALPRC 210
++V TH D +A ++ + + G G L G G GSPGEGG LPRC
Sbjct: 76 KQVFGTHTTQKELFDVVANPLVNDLIHGKNGLLFTYGVTGSGKTHTMTGSPGEGGLLPRC 135
Query: 211 RPLQFAS 217
+ F S
Sbjct: 136 LDMIFNS 142
>gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]
Length = 960
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 160 RRVGATHIVTGHNADDMAETVLMNFLRGDAGRL----ARGGG-----LGSPGEGGALPRC 210
++V TH D +A ++ + + G G L G G GSPGEGG LPRC
Sbjct: 76 KQVFGTHTTQKELFDVVANPLVNDLIHGKNGLLFTYGVTGSGKTHTMTGSPGEGGLLPRC 135
Query: 211 RPLQFAS 217
+ F S
Sbjct: 136 LDMIFNS 142
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 33.1 bits (74), Expect = 0.38
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 252 LKRLEAARPSAVLDLVHSAERLALAPAARPPRPG-ACSRCGALASRALCQACALLDGLNR 310
L+ +E R L + R +L+PAA P PG A S+ LA+ L
Sbjct: 220 LQLIEQIRSQVAL-MQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGS 278
Query: 311 GRPRLAIGKGRRGLDEE----ATPGTPGDPARPPASKAVP 346
G A +G + L +TPG P +P+ P A A P
Sbjct: 279 GPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAP 318
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.49
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 252 LKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALA---SRALCQACALLDGL 308
+ RL RPS+ L R + P + P P CSR + + SR ++ L
Sbjct: 3 MSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRR 62
Query: 309 NRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASK 343
+R R R G G ++PG P PAS+
Sbjct: 63 SRSRSR-PFSSGPSGPSGPSSPGGPSSGGASPASE 96
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.49
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 252 LKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALA---SRALCQACALLDGL 308
+ RL RPS+ L R + P + P P CSR + + SR ++ L
Sbjct: 3 MSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRR 62
Query: 309 NRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASK 343
+R R R G G ++PG P PAS+
Sbjct: 63 SRSRSR-PFSSGPSGPSGPSSPGGPSSGGASPASE 96
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.49
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 252 LKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALA---SRALCQACALLDGL 308
+ RL RPS+ L R + P + P P CSR + + SR ++ L
Sbjct: 3 MSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRR 62
Query: 309 NRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASK 343
+R R R G G ++PG P PAS+
Sbjct: 63 SRSRSR-PFSSGPSGPSGPSSPGGPSSGGASPASE 96
>gi|61676082 shadow of prion protein [Homo sapiens]
Length = 151
Score = 32.3 bits (72), Expect = 0.65
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 270 AERLALAPAARPPRPGACSRCGALASRALCQACALLDGLNRGRP-RLAIGKGRRGLDEEA 328
A R+ + PA R PG+ R A A A A GL G R A G G RGL++E
Sbjct: 46 ASRVRVRPAQRYGAPGSSLRVAA-AGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDE- 103
Query: 329 TPGTPGDPARPP 340
G PG P
Sbjct: 104 EDGVPGGNGTGP 115
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 308 LNRGRPRLAIGKGRRGLD------EEATPGTPGDPARPPAS 342
++RGRP GLD E A+PGTPG P PPA+
Sbjct: 25 VHRGRPGPEGAGPAAGLDVRAARREAASPGTPGPPPPPPAA 65
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 197 GLGSPGEGGALPRCRPLQFASQKEVVLYAHFRRLDYFSEECVYAP-------------EA 243
GL S G GG + P Q +Q + + A + + S+ C +P A
Sbjct: 18 GLDSRGVGGLMNSFPPPQGHAQNPLQVGAELQSRFFASQGCAQSPFQAAPAPPPTPQAPA 77
Query: 244 FRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACS 288
DLL L AA+ SA +A A A AA PP P A S
Sbjct: 78 AEPLQVDLLPVLAAAQESAAA--AAAAAAAAAAVAAAPPAPAAAS 120
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 197 GLGSPGEGGALPRCRPLQFASQKEVVLYAHFRRLDYFSEECVYAP-------------EA 243
GL S G GG + P Q +Q + + A + + S+ C +P A
Sbjct: 18 GLDSRGVGGLMNSFPPPQGHAQNPLQVGAELQSRFFASQGCAQSPFQAAPAPPPTPQAPA 77
Query: 244 FRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACS 288
DLL L AA+ SA +A A A AA PP P A S
Sbjct: 78 AEPLQVDLLPVLAAAQESAAA--AAAAAAAAAAVAAAPPAPAAAS 120
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 1 MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASG 60
+P PP A+C A + A RR L A C+A LH AGRL GA S
Sbjct: 84 LPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPR-LHQGGAGRLAAGGAEAGERRSP 142
Query: 61 GKDST 65
+ +T
Sbjct: 143 NRGAT 147
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 1 MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASG 60
+P PP A+C A + A RR L A C+A LH AGRL GA S
Sbjct: 84 LPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPR-LHQGGAGRLAAGGAEAGERRSP 142
Query: 61 GKDST 65
+ +T
Sbjct: 143 NRGAT 147
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 1 MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASG 60
+P PP A+C A + A RR L A C+A LH AGRL GA S
Sbjct: 84 LPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPR-LHQGGAGRLAAGGAEAGERRSP 142
Query: 61 GKDST 65
+ +T
Sbjct: 143 NRGAT 147
>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
1 [Homo sapiens]
Length = 1250
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 269 SAERLALAPAARPPRPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEA 328
S + L P A PP+PG + G L Q C + + G+G+ + E
Sbjct: 1012 SPSKETLPPPAAPPKPGKLNLSGVNLPGVLQQGCV------SAKAPVLSGRGKDSVVEFP 1065
Query: 329 TPGTPGDPARPPASKAVP 346
+P + D PP +P
Sbjct: 1066 SPPSDSDFPPPPPETELP 1083
>gi|124249372 PRAME family member 12 [Homo sapiens]
Length = 483
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 210 CRPLQFASQKEVVLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLEAARPSAVL 264
C PL Q + + F +LDYF + +++ GH LL+ L+A + V+
Sbjct: 245 CIPLDRKEQFVIQFTSQFLKLDYFQKLYMHSVSFLEGHLDQLLRCLQAPLETVVM 299
>gi|4504615 insulin-like growth factor binding protein 1 precursor
[Homo sapiens]
Length = 259
Score = 30.8 bits (68), Expect = 1.9
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 269 SAERLALAPAARPPRPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEA 328
SAE+LAL P P +CS A C CAL G G +A + RGL A
Sbjct: 34 SAEKLALCP----PVSASCSEVTRSAGCGCCPMCALPLGAACG---VATARCARGLSCRA 86
Query: 329 TPG 331
PG
Sbjct: 87 LPG 89
>gi|156105685 ATP-binding cassette, sub-family B, member 8 [Homo
sapiens]
Length = 718
Score = 30.8 bits (68), Expect = 1.9
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 4 PPCASCHAARAALRRPLSGQALCGACFCA-AFEAEVLHTVLAGRLLPPGAVVA-VGASGG 61
P C + LR ++ Q +C + C FE T+ LPPG +VA VG SGG
Sbjct: 439 PLSGGCCVPKEQLRGSVTFQNVCFSYPCRPGFEVLKDFTLT----LPPGKIVALVGQSGG 494
Query: 62 KDSTVLAHVLRALAPRLGI 80
+TV + + R P G+
Sbjct: 495 GKTTVASLLERFYDPTAGV 513
>gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]
Length = 949
Score = 30.8 bits (68), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 179 TVLMNFLRGDAGRLARGGGLGSPGEGGALPRC 210
T + + L G G GG G+PG GGALP C
Sbjct: 21 TQIQSSLNGGGGH----GGKGAPGPGGALPTC 48
>gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 30.4 bits (67), Expect = 2.5
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 227 FRRLDYFSEECVYAPEAFRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGA 286
FRR + EC A R + R A R +A H + A R RP A
Sbjct: 55 FRRPVEYCRECPNASVLIREASTS--GRRGAGRNAA---RAHLPAKKASRGRTRRRRPRA 109
Query: 287 CSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEATPGTP 333
+ A ++R L Q C L RP + G+ R G E A PG P
Sbjct: 110 AAAAHA-STRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRP 155
>gi|89057646 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 30.4 bits (67), Expect = 2.5
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 248 ARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALASRALCQACALLDG 307
+R L+R RPSA+ L R APAA RP SR A+RA A G
Sbjct: 97 SRQELERDYGLRPSALARLARKLSRRWSAPAAAGQRPAPGSRRARRAARAPPPPAA---G 153
Query: 308 LNRGRPRLA---IGKGRRGLDEE 327
R R +LA G G G E
Sbjct: 154 SRRVRLQLATLEAGPGAAGAGSE 176
>gi|89056946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 30.4 bits (67), Expect = 2.5
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 248 ARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALASRALCQACALLDG 307
+R L+R RPSA+ L R APAA RP SR A+RA A G
Sbjct: 97 SRQELERDYGLRPSALARLARKLSRRWSAPAAAGQRPAPGSRRARRAARAPPPPAA---G 153
Query: 308 LNRGRPRLA---IGKGRRGLDEE 327
R R +LA G G G E
Sbjct: 154 SRRVRLQLATLEAGPGAAGAGSE 176
>gi|223972648 t-SNARE domain containing 1 [Homo sapiens]
Length = 513
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 190 GRLARGGGLGSPGEGGALPR--CRPLQFA 216
G +ARGGGLGS G G R C+PL+ A
Sbjct: 4 GSIARGGGLGSRGPFGGPSRQGCQPLECA 32
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 281 PPRPGACSRCGALASRALCQACALLDGLNRGRP-RLAIGKGRRGLDEEATPGTPGD---P 336
P G+ S L RAL + ALL L GR + G GR + TP TP P
Sbjct: 628 PAERGSSSGTPKLIQRALLRGTALLASLGLGRDLQPPGGPGRERGESPTTPPTPTPAPCP 687
Query: 337 ARPPASKAV 345
PP S +
Sbjct: 688 TEPPPSPLI 696
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 30.0 bits (66), Expect = 3.2
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 274 ALAPAARPPRPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEATPGTP 333
A A AAR G SR +A R ACA L RG + R G E P P
Sbjct: 177 AAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRLGAGERPAP-RP 235
Query: 334 GDPARPPASKA 344
P R PA A
Sbjct: 236 RGPPRAPARGA 246
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 30.0 bits (66), Expect = 3.2
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 274 ALAPAARPPRPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEATPGTP 333
A A AAR G SR +A R ACA L RG + R G E P P
Sbjct: 177 AAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRLGAGERPAP-RP 235
Query: 334 GDPARPPASKA 344
P R PA A
Sbjct: 236 RGPPRAPARGA 246
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 299 CQACALLDGL---NRGRPRLAIGKGRRGLDEEATPGTPGDPARP 339
C AC L G GRP KG +G + PG PG P P
Sbjct: 724 CTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLP 767
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,220,708
Number of Sequences: 37866
Number of extensions: 721934
Number of successful extensions: 3830
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 3780
Number of HSP's gapped (non-prelim): 106
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.