Guide to the Human Genome
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Name: ATPBD3 Sequence: fasta or formatted (348aa) NCBI GI: 222537719
Description:

ATP binding domain 3

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.5         61           2
 C cysteine            4.0         14           2
 D aspartate           4.0         14           2
 E glutamate           4.9         17           2
 F phenylalanine       2.9         10           1
 G glycine            10.9         38           3
 H histidine           2.3          8           1
 I isoleucine          1.1          4           1
 K lysine              1.4          5           1
 L leucine            11.8         41           2
 M methionine          1.1          4           1
 N asparagine          0.9          3           1
 P proline             6.9         24           2
 Q glutamine           1.7          6           1
 R arginine           11.5         40           3
 S serine              4.9         17           1
 T threonine           3.4         12           1
 V valine              6.6         23           2
 W tryptophan          0.6          2           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP binding domain 3 
LOC100289938          0.018   PREDICTED: hypothetical protein XP_002347731 
C16orf84              0.018   cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [H...
C16orf84              0.018   cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [H...
KIF23                 0.013   kinesin family member 23 isoform 2 
KIF23                 0.013   kinesin family member 23 isoform 1 
SALL3                 0.012   sal-like 3 
LOC100293644          0.012   PREDICTED: hypothetical protein 
LOC100287563          0.012   PREDICTED: hypothetical protein 
LOC100287563          0.012   PREDICTED: hypothetical protein XP_002343733 
SPRN                  0.010   shadow of prion protein 
KLF16                 0.010   BTE-binding protein 4 
MAZ                   0.010   MYC-associated zinc finger protein isoform 2 
MAZ                   0.010   MYC-associated zinc finger protein isoform 1 
LOC100292591          0.010   PREDICTED: hypothetical protein 
LOC100287994          0.010   PREDICTED: hypothetical protein 
LOC100287994          0.010   PREDICTED: hypothetical protein XP_002342988 
RAPH1                 0.009   Ras association and pleckstrin homology domains 1 is...
PRAMEF12              0.009   PRAME family member 12 
IGFBP1                0.009   insulin-like growth factor binding protein 1 precurso...
ABCB8                 0.009   ATP-binding cassette, sub-family B, member 8 
ZCCHC14               0.009   zinc finger, CCHC domain containing 14 
LOC100128556          0.007   PREDICTED: hypothetical protein 
LOC388564             0.007   PREDICTED: hypothetical protein 
LOC388564             0.007   PREDICTED: hypothetical protein 
TSNARE1               0.007   t-SNARE domain containing 1 
MAP3K11               0.007   mitogen-activated protein kinase kinase kinase 11 [Ho...
LOC100287499          0.007   PREDICTED: hypothetical protein 
LOC100287499          0.007   PREDICTED: hypothetical protein XP_002343643 
COL16A1               0.007   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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