Guide to the Human Genome
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Name: LOC100289938 Sequence: fasta or formatted (248aa) NCBI GI: 239751150
Description:

PREDICTED: hypothetical protein XP_002347731

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         25           2
 C cysteine            3.2          8           1
 D aspartate           2.8          7           1
 E glutamate           8.5         21           2
 F phenylalanine       4.4         11           1
 G glycine             8.1         20           3
 H histidine           1.2          3           1
 I isoleucine          1.6          4           1
 K lysine              4.8         12           1
 L leucine             9.7         24           2
 M methionine          1.2          3           1
 N asparagine          1.2          3           1
 P proline            10.1         25           3
 Q glutamine           7.3         18           3
 R arginine            4.8         12           1
 S serine              6.9         17           4
 T threonine           2.8          7           1
 V valine              8.5         21           3
 W tryptophan          1.6          4           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347731 
C16orf84              0.990   cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [H...
C16orf84              0.990   cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [H...
ATPBD3                0.025   ATP binding domain 3 
ABI3                  0.023   NESH protein isoform 2 
ABI3                  0.023   NESH protein isoform 1 
HOXA4                 0.019   homeobox A4 
CPSF6                 0.019   cleavage and polyadenylation specific factor 6, 68 ...
SFRS15                0.017   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.017   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.017   splicing factor, arginine/serine-rich 15 isoform 1 [...
RSPO1                 0.017   R-spondin1 
CABLES2               0.017   Cdk5 and Abl enzyme substrate 2 
RSRC2                 0.017   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.017   arginine/serine-rich coiled-coil 2 isoform c 
RSRC2                 0.017   arginine/serine-rich coiled-coil 2 isoform a 
TNK2                  0.014   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.014   tyrosine kinase, non-receptor, 2 isoform 2 
TNRC6C                0.014   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.014   trinucleotide repeat containing 6C isoform 2 
TRNP1                 0.014   TMF regulated nuclear protein 
MARCH4                0.014   membrane-associated ring finger (C3HC4) 4 
EP300                 0.014   E1A binding protein p300 
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
PXK                   0.014   PX domain containing serine/threonine kinase 
ZFHX4                 0.014   zinc finger homeodomain 4 
MED25                 0.014   mediator complex subunit 25 
FAM40A                0.014   hypothetical protein LOC85369 
KDM6B                 0.012   lysine (K)-specific demethylase 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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