Guide to the Human Genome
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Name: LOC100128556 Sequence: fasta or formatted (203aa) NCBI GI: 169183867
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {203aa} PREDICTED: hypothetical protein
alt prot {203aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         28           5
 C cysteine            2.0          4           1
 D aspartate           3.0          6           2
 E glutamate           3.4          7           1
 F phenylalanine       3.4          7           1
 G glycine             5.9         12           1
 H histidine           3.0          6           1
 I isoleucine          2.5          5           1
 K lysine              3.9          8           2
 L leucine             8.9         18           3
 M methionine          1.5          3           1
 N asparagine          3.0          6           1
 P proline             5.4         11           1
 Q glutamine           4.9         10           1
 R arginine           13.3         27           4
 S serine             10.8         22           3
 T threonine           3.0          6           1
 V valine              5.4         11           2
 W tryptophan          2.0          4           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128556          0.992   PREDICTED: hypothetical protein 
LOC100128556          0.992   PREDICTED: hypothetical protein 
SFRS7                 0.031   splicing factor, arginine/serine-rich 7 
ARL6IP4               0.029   SRp25 nuclear protein isoform 4 
ARL6IP4               0.029   SRp25 nuclear protein isoform 2 
NFKBIL2               0.026   NF-kappa-B inhibitor-like protein 2 
ZNF512B               0.026   zinc finger protein 512B 
LOC100287063          0.026   PREDICTED: hypothetical protein XP_002342368 
LOC100292592          0.024   PREDICTED: hypothetical protein 
LOC100289939          0.024   PREDICTED: hypothetical protein XP_002347821 
LOC100288866          0.024   PREDICTED: hypothetical protein XP_002343571 
SRRM2                 0.024   splicing coactivator subunit SRm300 
LOC100287063          0.024   PREDICTED: hypothetical protein 
CRKRS                 0.024   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.024   Cdc2-related kinase, arginine/serine-rich isoform 1...
LOC100289716          0.021   PREDICTED: hypothetical protein XP_002346898 
LOC100289949          0.021   PREDICTED: hypothetical protein XP_002346877 
REXO1                 0.018   transcription elongation factor B polypeptide 3 bin...
SFRS8                 0.018   splicing factor, arginine/serine-rich 8 
DONSON                0.018   downstream neighbor of SON 
ARHGAP23              0.018   Rho GTPase activating protein 23 
LOC100132234          0.018   PREDICTED: hypothetical protein LOC100132234 
LOC100130174          0.018   PREDICTED: hypothetical protein 
LOC100132234          0.018   PREDICTED: hypothetical protein LOC100132234 
LOC100130174          0.018   PREDICTED: hypothetical protein 
LOC100132234          0.018   PREDICTED: hypothetical protein LOC100132234 
ARL6IP4               0.018   SRp25 nuclear protein isoform 3 
ARL6IP4               0.018   SRp25 nuclear protein isoform 1 
DNMT3B                0.016   DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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