Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C16orf84 Sequence: fasta or formatted (485aa) NCBI GI: 61676108
Description:

cytoplasmic tRNA 2-thiolation protein 2 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {515aa} cytoplasmic tRNA 2-thiolation protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         48           2
 C cysteine            3.9         19           2
 D aspartate           4.5         22           1
 E glutamate           6.2         30           2
 F phenylalanine       3.9         19           1
 G glycine             8.2         40           3
 H histidine           1.9          9           1
 I isoleucine          2.1         10           1
 K lysine              4.1         20           1
 L leucine             9.7         47           2
 M methionine          2.3         11           1
 N asparagine          1.0          5           1
 P proline             8.2         40           3
 Q glutamine           5.6         27           3
 R arginine            6.2         30           2
 S serine              7.2         35           4
 T threonine           4.9         24           1
 V valine              7.4         36           4
 W tryptophan          1.2          6           1
 Y tyrosine            1.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [H... 
C16orf84              0.975   cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [H...
LOC100289938          0.495   PREDICTED: hypothetical protein XP_002347731 
ATPBD3                0.012   ATP binding domain 3 
LOC100288496          0.011   PREDICTED: hypothetical protein XP_002342747 
TAL1                  0.011   T-cell acute lymphocytic leukemia 1 
ABI3                  0.011   NESH protein isoform 2 
ABI3                  0.011   NESH protein isoform 1 
HOXA4                 0.009   homeobox A4 
NDST2                 0.009   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
CPSF6                 0.009   cleavage and polyadenylation specific factor 6, 68 ...
SFRS15                0.008   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.008   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.008   splicing factor, arginine/serine-rich 15 isoform 1 [...
RSPO1                 0.008   R-spondin1 
CABLES2               0.008   Cdk5 and Abl enzyme substrate 2 
RSRC2                 0.008   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.008   arginine/serine-rich coiled-coil 2 isoform c 
RSRC2                 0.008   arginine/serine-rich coiled-coil 2 isoform a 
TNK2                  0.007   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.007   tyrosine kinase, non-receptor, 2 isoform 2 
PHF1                  0.007   PHD finger protein 1 isoform b 
TNRC6C                0.007   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.007   trinucleotide repeat containing 6C isoform 2 
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
TRNP1                 0.007   TMF regulated nuclear protein 
KCNQ4                 0.007   potassium voltage-gated channel KQT-like protein 4 i...
KCNQ4                 0.007   potassium voltage-gated channel KQT-like protein 4 i...
MARCH4                0.007   membrane-associated ring finger (C3HC4) 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press