Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C13orf38 Sequence: fasta or formatted (214aa) NCBI GI: 222418565
Description:

hypothetical protein LOC728591 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {139aa} hypothetical protein LOC728591 isoform b
alt prot {139aa} hypothetical protein LOC728591 isoform b
alt prot {141aa} hypothetical protein LOC728591 isoform c
alt prot {112aa} hypothetical protein LOC728591 isoform d
alt prot {112aa} hypothetical protein LOC728591 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          7           1
 C cysteine            0.0          0           0
 D aspartate           2.8          6           1
 E glutamate          12.6         27           3
 F phenylalanine       0.9          2           1
 G glycine             3.3          7           1
 H histidine           2.3          5           1
 I isoleucine          3.3          7           1
 K lysine             11.7         25           2
 L leucine            11.7         25           2
 M methionine          1.9          4           1
 N asparagine          6.1         13           2
 P proline             3.3          7           1
 Q glutamine           7.5         16           2
 R arginine            7.0         15           2
 S serine              6.5         14           2
 T threonine           5.1         11           1
 V valine              6.1         13           1
 W tryptophan          0.5          1           1
 Y tyrosine            4.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC728591 isoform a 
C13orf38              0.501   hypothetical protein LOC728591 isoform d 
C13orf38              0.501   hypothetical protein LOC728591 isoform d 
C13orf38              0.332   hypothetical protein LOC728591 isoform b 
C13orf38              0.332   hypothetical protein LOC728591 isoform b 
C13orf38              0.315   hypothetical protein LOC728591 isoform c 
ODF2L                 0.068   outer dense fiber of sperm tails 2-like isoform b [H...
ODF2L                 0.068   outer dense fiber of sperm tails 2-like isoform a [H...
SMC1A                 0.060   structural maintenance of chromosomes 1A 
TCHH                  0.060   trichohyalin 
MYH7                  0.055   myosin, heavy chain 7, cardiac muscle, beta 
MYH2                  0.055   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.055   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH8                  0.055   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH1                  0.050   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CLIP1                 0.050   restin isoform b 
CLIP1                 0.050   restin isoform a 
MYH13                 0.048   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH6                  0.048   myosin heavy chain 6 
MYH3                  0.048   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH4                  0.045   myosin, heavy polypeptide 4, skeletal muscle 
ROCK1                 0.045   Rho-associated, coiled-coil containing protein kinase...
RABEP1                0.045   rabaptin, RAB GTPase binding effector protein 1 iso...
RABEP1                0.045   rabaptin, RAB GTPase binding effector protein 1 isof...
CEP250                0.043   centrosomal protein 2 
ROCK2                 0.043   Rho-associated, coiled-coil containing protein kinas...
SMC4                  0.043   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.043   SMC4 structural maintenance of chromosomes 4-like 1 ...
MYH9                  0.043   myosin, heavy polypeptide 9, non-muscle 
TPR                   0.043   nuclear pore complex-associated protein TPR 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press