Guide to the Human Genome
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Name: C13orf38 Sequence: fasta or formatted (112aa) NCBI GI: 222418574
Description:

hypothetical protein LOC728591 isoform d

Not currently referenced in the text

Other entries for this name:
alt prot {214aa} hypothetical protein LOC728591 isoform a
alt prot {139aa} hypothetical protein LOC728591 isoform b
alt prot {139aa} hypothetical protein LOC728591 isoform b
alt prot {141aa} hypothetical protein LOC728591 isoform c
alt mRNA {112aa} hypothetical protein LOC728591 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          5           1
 C cysteine            0.0          0           0
 D aspartate           0.9          1           1
 E glutamate           9.8         11           3
 F phenylalanine       0.0          0           0
 G glycine             3.6          4           1
 H histidine           2.7          3           1
 I isoleucine          1.8          2           1
 K lysine             12.5         14           2
 L leucine            11.6         13           2
 M methionine          2.7          3           1
 N asparagine          5.4          6           2
 P proline             6.2          7           1
 Q glutamine           9.8         11           2
 R arginine            6.2          7           2
 S serine              6.2          7           1
 T threonine           5.4          6           1
 V valine              6.2          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.5          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC728591 isoform d 
C13orf38              1.000   hypothetical protein LOC728591 isoform d 
C13orf38              1.000   hypothetical protein LOC728591 isoform a 
C13orf38              0.663   hypothetical protein LOC728591 isoform b 
C13orf38              0.663   hypothetical protein LOC728591 isoform b 
C13orf38              0.628   hypothetical protein LOC728591 isoform c 
TCHH                  0.060   trichohyalin 
ROCK1                 0.055   Rho-associated, coiled-coil containing protein kinase...
MINK1                 0.055   misshapen/NIK-related kinase isoform 4 
MINK1                 0.055   misshapen/NIK-related kinase isoform 2 
MINK1                 0.055   misshapen/NIK-related kinase isoform 3 
MINK1                 0.055   misshapen/NIK-related kinase isoform 1 
CEP290                0.055   centrosomal protein 290kDa 
CEP250                0.050   centrosomal protein 2 
SMC1A                 0.050   structural maintenance of chromosomes 1A 
CYorf15B              0.040   lipopolysaccaride-specific response 5-like protein [...
C14orf145             0.040   hypothetical protein LOC145508 
MTUS1                 0.040   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.040   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.040   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.040   mitochondrial tumor suppressor 1 isoform 4 
MYH1                  0.040   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH15                 0.040   myosin, heavy polypeptide 15 
LUZP2                 0.035   leucine zipper protein 2 
NIN                   0.035   ninein isoform 4 
NIN                   0.035   ninein isoform 5 
NIN                   0.035   ninein isoform 1 
NIN                   0.035   ninein isoform 2 
AKAP9                 0.035   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.035   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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