Guide to the Human Genome
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Name: C13orf38 Sequence: fasta or formatted (141aa) NCBI GI: 222418572
Description:

hypothetical protein LOC728591 isoform c

Not currently referenced in the text

Other entries for this name:
alt prot {214aa} hypothetical protein LOC728591 isoform a
alt prot {139aa} hypothetical protein LOC728591 isoform b
alt prot {139aa} hypothetical protein LOC728591 isoform b
alt prot {112aa} hypothetical protein LOC728591 isoform d
alt prot {112aa} hypothetical protein LOC728591 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          9           2
 C cysteine            2.8          4           1
 D aspartate           1.4          2           1
 E glutamate          10.6         15           3
 F phenylalanine       0.7          1           1
 G glycine             5.0          7           1
 H histidine           2.1          3           1
 I isoleucine          0.7          1           1
 K lysine              9.2         13           2
 L leucine            17.0         24           3
 M methionine          2.1          3           1
 N asparagine          3.5          5           2
 P proline             2.8          4           1
 Q glutamine           9.2         13           2
 R arginine            3.5          5           2
 S serine              7.8         11           2
 T threonine           6.4          9           1
 V valine              5.0          7           1
 W tryptophan          0.7          1           1
 Y tyrosine            2.8          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC728591 isoform c 
C13orf38              0.961   hypothetical protein LOC728591 isoform b 
C13orf38              0.961   hypothetical protein LOC728591 isoform b 
C13orf38              0.490   hypothetical protein LOC728591 isoform d 
C13orf38              0.490   hypothetical protein LOC728591 isoform d 
C13orf38              0.490   hypothetical protein LOC728591 isoform a 
LUZP2                 0.051   leucine zipper protein 2 
ROCK1                 0.047   Rho-associated, coiled-coil containing protein kinase...
CEP250                0.043   centrosomal protein 2 
TCHH                  0.043   trichohyalin 
SMC1A                 0.043   structural maintenance of chromosomes 1A 
CEP290                0.039   centrosomal protein 290kDa 
MTUS1                 0.039   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.039   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.039   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.039   mitochondrial tumor suppressor 1 isoform 4 
CCDC73                0.039   sarcoma antigen NY-SAR-79 
ZC3H14                0.035   zinc finger CCCH-type containing 14 isoform 3 
CYorf15B              0.035   lipopolysaccaride-specific response 5-like protein [...
C14orf145             0.031   hypothetical protein LOC145508 
MYH1                  0.031   myosin, heavy chain 1, skeletal muscle, adult [Homo...
ProSAPiP1             0.031   ProSAPiP1 protein 
CCDC93                0.031   coiled-coil domain containing 93 
MYH2                  0.027   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.027   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ROCK2                 0.027   Rho-associated, coiled-coil containing protein kinas...
MINK1                 0.027   misshapen/NIK-related kinase isoform 4 
MINK1                 0.027   misshapen/NIK-related kinase isoform 2 
MINK1                 0.027   misshapen/NIK-related kinase isoform 3 
MINK1                 0.027   misshapen/NIK-related kinase isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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