Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 222352096
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222352096 ubiquitin D [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222352096 ubiquitin D [Homo sapiens] 331 2e-91
gi|11024714 ubiquitin B precursor [Homo sapiens] 84 4e-17
gi|67191208 ubiquitin C [Homo sapiens] 84 4e-17
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 52 3e-07
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 52 3e-07
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 50 7e-07
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 50 7e-07
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 45 3e-05
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 44 6e-05
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 44 6e-05
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 44 6e-05
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 43 1e-04
gi|5453760 neural precursor cell expressed, developmentally down... 42 2e-04
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 40 7e-04
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 39 0.002
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 39 0.002
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 39 0.003
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 37 0.010
gi|16753207 ubiquilin 2 [Homo sapiens] 36 0.013
gi|8567418 ubiquilin 3 [Homo sapiens] 35 0.030
gi|7657667 ubiquitin-like 4 [Homo sapiens] 35 0.039
gi|239755591 PREDICTED: similar to Putative ubiquitin-like prote... 34 0.066
gi|239750097 PREDICTED: hypothetical protein XP_002347291 [Homo ... 34 0.066
gi|118918415 shank-interacting protein-like 1 [Homo sapiens] 31 0.56
gi|44662819 ubiquitin-like 4B [Homo sapiens] 31 0.56
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 30 0.95
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 30 0.95
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 29 1.6
gi|62955833 DNA-damage inducible protein 2 [Homo sapiens] 29 2.1
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 28 2.8
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 331 bits (848), Expect = 2e-91
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR 60
MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR
Sbjct: 1 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR 60
Query: 61 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE 120
RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE
Sbjct: 61 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE 120
Query: 121 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG
Sbjct: 121 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 63 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 116
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 117 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 79 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 138
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 139 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 63 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 116
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 117 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 155 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQ 214
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 215 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 268
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 231 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 290
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 291 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 344
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 307 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 366
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 367 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 383 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 442
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 443 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 459 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 518
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 519 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 572
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 573 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 84.3 bits (207), Expect = 4e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 535 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 594
Query: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 595 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648
Query: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 51.6 bits (122), Expect = 3e-07
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 70 KEKTIHLTLK----VVKPSDEEL 88
KE T+HL L+ +++PS +L
Sbjct: 63 KESTLHLVLRLRGGIIEPSLRQL 85
Score = 50.4 bits (119), Expect = 7e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++DY I+K + L L
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 164 GG 165
GG
Sbjct: 75 GG 76
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 51.6 bits (122), Expect = 3e-07
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 70 KEKTIHLTLK----VVKPSDEEL 88
KE T+HL L+ +++PS +L
Sbjct: 63 KESTLHLVLRLRGGIIEPSLRQL 85
Score = 50.4 bits (119), Expect = 7e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++DY I+K + L L
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 164 GG 165
GG
Sbjct: 75 GG 76
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 50.4 bits (119), Expect = 7e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++DY I+K + L L
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 164 GG 165
GG
Sbjct: 75 GG 76
Score = 50.1 bits (118), Expect = 9e-07
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 70 KEKTIHLTLKV 80
KE T+HL L++
Sbjct: 63 KESTLHLVLRL 73
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 50.4 bits (119), Expect = 7e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++DY I+K + L L
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 164 GG 165
GG
Sbjct: 75 GG 76
Score = 50.1 bits (118), Expect = 9e-07
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 70 KEKTIHLTLKV 80
KE T+HL L++
Sbjct: 63 KESTLHLVLRL 73
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 45.1 bits (105), Expect = 3e-05
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 29 SVKKIKEHVRSKTKVPVQDQVLLL--GSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDE 86
SV ++K + K V Q L + L+ R L+S G+ T+ L VV DE
Sbjct: 24 SVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV---LLVVDKCDE 80
Query: 87 ELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMA 146
PL ++ ++ + +VR + +VA +K + G+ + +T GK LED +
Sbjct: 81 --PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG 138
Query: 147 DYGIRKGNLLFLACYCIGG 165
+YG++ + +F+ GG
Sbjct: 139 EYGLKPLSTVFMNLRLRGG 157
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 43.9 bits (102), Expect = 6e-05
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++D I+K L L
Sbjct: 83 LEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL 137
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 43.9 bits (102), Expect = 6e-05
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++D I+K L L
Sbjct: 83 LEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL 137
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 43.9 bits (102), Expect = 6e-05
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++D I+K L L
Sbjct: 83 LEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL 137
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 43.1 bits (100), Expect = 1e-04
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 10 VHVRSEEWDLMTFD--ANPYDSVKKIKEHVRSKTKVP----VQDQVLLLGSKILKPRRSL 63
+H+ E+ F+ NPY+ ++K+KE +R + QV ++L R SL
Sbjct: 354 IHLTVEQRGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQRLSFQVPGSERQLLSSRCSL 413
Query: 64 SSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKT 123
+ YGI I+L + PS E+ +F+ + + + +S + +K IE +
Sbjct: 414 AKYGIFSHTHIYLLETI--PS--EIQVFV--KNPDGGSYAYAINPNSFILGLKQQIEDQQ 467
Query: 124 GIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLA 159
G+ + Q + G+ L+D + YGI+ + L L+
Sbjct: 468 GLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILS 503
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 42.0 bits (97), Expect = 2e-04
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
+ + + V ++K +E K GI P+ Q + +GK++ D K ADY I G++L L
Sbjct: 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74
Query: 164 GG 165
GG
Sbjct: 75 GG 76
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 23 DANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTL 78
D P D V++IKE V K +P Q Q L+ K + ++ + Y I +HL L
Sbjct: 16 DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 40.4 bits (93), Expect = 7e-04
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 102 HLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACY 161
H +V +VAQ+KA + + GI PE Q+V G LED + G+ L +A
Sbjct: 11 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 70
Query: 162 CIGG 165
+GG
Sbjct: 71 MLGG 74
Score = 36.6 bits (83), Expect = 0.010
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 12 VRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKE 71
VR++E L TF+ ++V +IK HV S + +DQV+LL L+ +L G++
Sbjct: 5 VRAQE--LHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEAL 62
Query: 72 KTIHL 76
T+ +
Sbjct: 63 TTLEV 67
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 29 SVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVV-KPSD 85
SV++ KE + + K VL+ KILK + +LS +GI T+HL +K +P D
Sbjct: 57 SVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQD 114
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 29 SVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVV-KPSD 85
SV++ KE + + K VL+ KILK + +LS +GI T+HL +K +P D
Sbjct: 57 SVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQD 114
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 29 SVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDE 86
SVK+ KE + + K VL+ KILK +L+ +GI T+HL +K + + +
Sbjct: 33 SVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQD 90
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 36.6 bits (83), Expect = 0.010
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRS---KTKVPVQDQVLLLGSKILKPRRSLSSY 66
V +++ + D +P ++VK +KE + S K PV Q L+ KIL +L Y
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 67 GIDKEKTIHLTLKVVKPSDEELP 89
ID++ + + V KP P
Sbjct: 63 KIDEKNFV--VVMVTKPKAVSTP 83
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 36.2 bits (82), Expect = 0.013
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 29 SVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLK 79
SV++ KE + + K VL+ KILK + +L +GI T+HL +K
Sbjct: 53 SVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK 103
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 35.0 bits (79), Expect = 0.030
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 18 DLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLT 77
D F +++++KE + + K VL+ KILK SL+ G+ T+HL
Sbjct: 31 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLV 90
Query: 78 LK 79
+K
Sbjct: 91 IK 92
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 34.7 bits (78), Expect = 0.039
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 30 VKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELP 89
V +K+ V K VPV+ Q LL K L + LS Y I ++L VVKP L
Sbjct: 23 VSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNL---VVKP----LE 75
Query: 90 LFLVESGDEAKR 101
L+E G EA+R
Sbjct: 76 KVLLEEG-EAQR 86
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158
LQV V+ +K ++ K + Q + GK L DGK ++DY I + L L
Sbjct: 15 LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNL 69
>gi|239755591 PREDICTED: similar to Putative ubiquitin-like protein
FUBI-like protein ENSP00000310146 [Homo sapiens]
Length = 137
Score = 33.9 bits (76), Expect = 0.066
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 102 HLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACY 161
H L+V +VAQ KA + + G+IPE ++V G L++ + G+ L +
Sbjct: 36 HTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQCGVEALTTLEVVGR 95
Query: 162 CIGG 165
+GG
Sbjct: 96 RLGG 99
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 2 APNASCLC---VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILK 58
A + S LC +VR+ E L T + ++V + K HV S + +D+V+LL L+
Sbjct: 17 AADLSLLCPQVAYVRARE--LHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQ 74
Query: 59 PRRSLSSYGIDKEKTIHL 76
+L G++ T+ +
Sbjct: 75 NEATLGQCGVEALTTLEV 92
>gi|239750097 PREDICTED: hypothetical protein XP_002347291 [Homo
sapiens]
Length = 143
Score = 33.9 bits (76), Expect = 0.066
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 102 HLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACY 161
H L+V +VAQ KA + + G+IPE ++V G L++ + G+ L +
Sbjct: 36 HTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQCGVEALTTLEVVGR 95
Query: 162 CIGG 165
+GG
Sbjct: 96 RLGG 99
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 2 APNASCLC---VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILK 58
A + S LC +VR+ E L T + ++V + K HV S + +D+V+LL L+
Sbjct: 17 AADLSLLCPQVAYVRARE--LHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQ 74
Query: 59 PRRSLSSYGIDKEKTIHL 76
+L G++ T+ +
Sbjct: 75 NEATLGQCGVEALTTLEV 92
>gi|118918415 shank-interacting protein-like 1 [Homo sapiens]
Length = 387
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 20 MTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKE 71
+ +P+ +V ++E V S+ P Q ++G + P RSL+SYG+ ++
Sbjct: 240 VALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCLCVPERSLASYGVRQD 291
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 KRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGI 150
+R L+V SVA +K ++ + + E Q + G+ LED K ++DY I
Sbjct: 11 QRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYCI 61
Score = 30.4 bits (67), Expect = 0.73
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 28 DSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLK 79
+SV +K V + KVP + Q LL ++L+ + LS Y I +I++ ++
Sbjct: 21 ESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYCIGPNASINVIMQ 72
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 30.0 bits (66), Expect = 0.95
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 15 EEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTI 74
+E + + K+ +H+++KT VQD + + K LK +S + DK+++
Sbjct: 889 KEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQSK 948
Query: 75 HLTLKVVKPSDEELPLFLVESGDEA 99
T + KPSD + + +E E+
Sbjct: 949 KGTEEKKKPSDFKKKVIKMEQQYES 973
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 30.0 bits (66), Expect = 0.95
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 15 EEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTI 74
+E + + K+ +H+++KT VQD + + K LK +S + DK+++
Sbjct: 927 KEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQSK 986
Query: 75 HLTLKVVKPSDEELPLFLVESGDEA 99
T + KPSD + + +E E+
Sbjct: 987 KGTEEKKKPSDFKKKVIKMEQQYES 1011
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 81 VKPSDEELPLFLVESGDEAKRHLLQ-VRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRL 139
V P + V + D + H + + R + V +++ I+ + P Q + GK++
Sbjct: 6 VPPLSADTMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM 65
Query: 140 EDGKMMADYGIRKGNLLFL 158
EDG + DY +R + + L
Sbjct: 66 EDGHTLFDYEVRLNDTIQL 84
>gi|62955833 DNA-damage inducible protein 2 [Homo sapiens]
Length = 399
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 104 LQVRRSSSVAQVKAMIETKTGI-IPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158
LQV + +A+ E ++GI E+QIV ++ + +A YG++ G+++ L
Sbjct: 19 LQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGDVVIL 74
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 93 VESGDEAKRHLLQ-VRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIR 151
V + D + H + + R + V +++ I+ + P Q + GK++EDG + DY +R
Sbjct: 5 VRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVR 64
Query: 152 KGNLLFL 158
+ + L
Sbjct: 65 LNDTIQL 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,052,171
Number of Sequences: 37866
Number of extensions: 231830
Number of successful extensions: 722
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 70
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.