Guide to the Human Genome
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Name: LOC100291851 Sequence: fasta or formatted (137aa) NCBI GI: 239755591
Description:

PREDICTED: similar to Putative ubiquitin-like protein FUBI-like protein ENSP00000310146

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         14           2
 C cysteine            2.9          4           1
 D aspartate           1.5          2           1
 E glutamate           6.6          9           1
 F phenylalanine       0.0          0           0
 G glycine            10.2         14           3
 H histidine           2.9          4           1
 I isoleucine          0.7          1           1
 K lysine              2.2          3           1
 L leucine            13.9         19           2
 M methionine          0.7          1           1
 N asparagine          4.4          6           2
 P proline             4.4          6           1
 Q glutamine           5.1          7           1
 R arginine            8.8         12           3
 S serine              7.3         10           2
 T threonine           5.8          8           2
 V valine              8.8         12           2
 W tryptophan          2.2          3           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative ubiquitin-like prote... 
LOC100290696          0.681   PREDICTED: hypothetical protein XP_002347291 
FAU                   0.362   ubiquitin-like protein fubi and ribosomal protein S30...
UBB                   0.059   ubiquitin B precursor 
RPS27A                0.059   ubiquitin and ribosomal protein S27a precursor [Hom...
RPS27A                0.059   ubiquitin and ribosomal protein S27a precursor 
UBC                   0.059   ubiquitin C 
UBA52                 0.059   ubiquitin and ribosomal protein L40 precursor 
UBA52                 0.059   ubiquitin and ribosomal protein L40 precursor 
LOC100128355          0.055   PREDICTED: similar to hCG1790904 
LOC100128355          0.055   PREDICTED: similar to hCG1790904 
LOC100128355          0.055   PREDICTED: similar to hCG1790904 
ISG15                 0.047   ISG15 ubiquitin-like modifier 
UBD                   0.035   ubiquitin D 
KIAA1529              0.031   hypothetical protein LOC57653 
DST                   0.020   dystonin isoform 4 
DST                   0.020   dystonin isoform 3 
DST                   0.020   dystonin isoform 2 
DST                   0.020   dystonin isoform 1 
ARRDC5                0.020   arrestin domain containing 5 
DST                   0.016   dystonin isoform 1eB precursor 
DST                   0.016   dystonin isoform 1eA precursor 
DST                   0.016   dystonin isoform 1e precursor 
IAH1                  0.016   isoamyl acetate-hydrolyzing esterase 1 homolog [Homo...
CEP192                0.012   centrosomal protein 192kDa 
IARS2                 0.012   mitochondrial isoleucine tRNA synthetase 
TMPRSS3               0.012   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.012   transmembrane protease, serine 3 isoform 3 
SELP                  0.008   selectin P precursor 
FOXH1                 0.008   forkhead box H1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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