Guide to the Human Genome
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Name: CITED1 Sequence: fasta or formatted (193aa) NCBI GI: 222136686
Description:

melanocyte-specific gene 1 isoform 1

Referenced in:

CREB / ATF Family

Other entries for this name:
alt prot [219aa] melanocyte-specific gene 1 isoform 2
alt mRNA [193aa] melanocyte-specific gene 1 isoform 1
alt mRNA [193aa] melanocyte-specific gene 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         24           3
 C cysteine            0.5          1           1
 D aspartate           5.2         10           1
 E glutamate           5.2         10           2
 F phenylalanine       2.6          5           1
 G glycine             8.8         17           2
 H histidine           2.1          4           1
 I isoleucine          2.1          4           2
 K lysine              3.6          7           1
 L leucine             8.8         17           2
 M methionine          2.6          5           1
 N asparagine          4.1          8           1
 P proline            10.9         21           2
 Q glutamine           4.7          9           1
 R arginine            1.6          3           1
 S serine             11.9         23           3
 T threonine           5.7         11           3
 V valine              4.7          9           2
 W tryptophan          1.0          2           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanocyte-specific gene 1 isoform 1 
CITED1                1.000   melanocyte-specific gene 1 isoform 1 
CITED1                1.000   melanocyte-specific gene 1 isoform 1 
CITED1                1.000   melanocyte-specific gene 1 isoform 2 
CITED2                0.186   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
CITED4                0.134   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
BIN1                  0.038   bridging integrator 1 isoform 5 
BIN1                  0.038   bridging integrator 1 isoform 6 
BIN1                  0.036   bridging integrator 1 isoform 7 
BIN1                  0.036   bridging integrator 1 isoform 3 
COL4A3                0.036   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.036   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.036   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.036   alpha 3 type IV collagen isoform 1 precursor 
BIN1                  0.033   bridging integrator 1 isoform 4 
PLEKHA7               0.030   pleckstrin homology domain containing, family A mem...
EYA1                  0.030   eyes absent 1 isoform c 
KIAA1543              0.027   NEZHA isoform 2 
KIAA1543              0.027   NEZHA isoform 1 
PELP1                 0.027   proline, glutamic acid and leucine rich protein 1 [...
TSC22D1               0.027   TSC22 domain family, member 1 isoform 1 
UNCX                  0.027   UNC homeobox 
TBX1                  0.027   T-box 1 isoform B 
TBX1                  0.027   T-box 1 isoform C 
TBX1                  0.027   T-box 1 isoform A 
WHSC2                 0.027   Wolf-Hirschhorn syndrome candidate 2 protein 
BIN1                  0.025   bridging integrator 1 isoform 2 
BIN1                  0.025   bridging integrator 1 isoform 1 
PCLO                  0.025   piccolo isoform 2 
PCLO                  0.025   piccolo isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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