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Search of human proteins with 222136615
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
(743 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens] 1501 0.0
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens] 1484 0.0
gi|145199237 transcription elongation factor B polypeptide 3 bin... 110 6e-24
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ... 108 1e-23
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ... 108 1e-23
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ... 108 1e-23
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ... 108 1e-23
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti... 108 1e-23
gi|126273519 exonuclease GOR [Homo sapiens] 108 2e-23
gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1... 77 4e-14
gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 ... 69 2e-11
gi|6857800 interferon stimulated exonuclease [Homo sapiens] 68 3e-11
gi|188536114 PAN2 polyA specific ribonuclease subunit homolog is... 68 4e-11
gi|188536112 PAN2 polyA specific ribonuclease subunit homolog is... 68 4e-11
gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo s... 64 7e-10
gi|55956788 nucleolin [Homo sapiens] 35 0.19
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 34 0.56
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 34 0.56
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 33 0.96
gi|56790919 haspin [Homo sapiens] 32 2.1
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 32 2.8
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 32 2.8
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 32 2.8
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 32 2.8
gi|238859599 RNA binding motif protein 34 isoform 2 [Homo sapiens] 31 3.6
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 31 3.6
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens] 31 3.6
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens] 31 3.6
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens] 31 3.6
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens] 31 3.6
>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
Length = 743
Score = 1501 bits (3885), Expect = 0.0
Identities = 743/743 (100%), Positives = 743/743 (100%)
Query: 1 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE 60
MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE
Sbjct: 1 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE 60
Query: 61 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL 120
VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL
Sbjct: 61 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL 120
Query: 121 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY 180
RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY
Sbjct: 121 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY 180
Query: 181 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK 240
GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK
Sbjct: 181 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK 240
Query: 241 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL 300
GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL
Sbjct: 241 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL 300
Query: 301 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR 360
LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR
Sbjct: 301 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR 360
Query: 361 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT 420
LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT
Sbjct: 361 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT 420
Query: 421 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF 480
SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF
Sbjct: 421 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF 480
Query: 481 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET 540
SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET
Sbjct: 481 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET 540
Query: 541 RQVQRPVTELTLDCDTLVNELEGDSENQGSIYLSGVSETFKEQLLQEPRLFLGLEAVILP 600
RQVQRPVTELTLDCDTLVNELEGDSENQGSIYLSGVSETFKEQLLQEPRLFLGLEAVILP
Sbjct: 541 RQVQRPVTELTLDCDTLVNELEGDSENQGSIYLSGVSETFKEQLLQEPRLFLGLEAVILP 600
Query: 601 KDLKSGKQKKYCFLKFKSFGSAQQALNILTGKDWKLKGRHALTPRHLHAWLRGLPPESTR 660
KDLKSGKQKKYCFLKFKSFGSAQQALNILTGKDWKLKGRHALTPRHLHAWLRGLPPESTR
Sbjct: 601 KDLKSGKQKKYCFLKFKSFGSAQQALNILTGKDWKLKGRHALTPRHLHAWLRGLPPESTR 660
Query: 661 LPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKIGKLYNSLCPGTLCLILLPGTKSTHG 720
LPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKIGKLYNSLCPGTLCLILLPGTKSTHG
Sbjct: 661 LPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKIGKLYNSLCPGTLCLILLPGTKSTHG 720
Query: 721 SLSGLGLMGIKEEEESAGPGLCS 743
SLSGLGLMGIKEEEESAGPGLCS
Sbjct: 721 SLSGLGLMGIKEEEESAGPGLCS 743
>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
Length = 774
Score = 1484 bits (3843), Expect = 0.0
Identities = 743/774 (95%), Positives = 743/774 (95%), Gaps = 31/774 (4%)
Query: 1 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE 60
MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE
Sbjct: 1 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE 60
Query: 61 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL 120
VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL
Sbjct: 61 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL 120
Query: 121 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY 180
RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY
Sbjct: 121 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY 180
Query: 181 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK 240
GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK
Sbjct: 181 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK 240
Query: 241 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL 300
GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL
Sbjct: 241 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL 300
Query: 301 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR 360
LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR
Sbjct: 301 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR 360
Query: 361 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT 420
LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT
Sbjct: 361 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT 420
Query: 421 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF 480
SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF
Sbjct: 421 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF 480
Query: 481 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET 540
SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET
Sbjct: 481 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET 540
Query: 541 RQ-------------------------------VQRPVTELTLDCDTLVNELEGDSENQG 569
RQ VQRPVTELTLDCDTLVNELEGDSENQG
Sbjct: 541 RQPHLCIQYEVLEAAQLAIESLDGILVDGICIKVQRPVTELTLDCDTLVNELEGDSENQG 600
Query: 570 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL 629
SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL
Sbjct: 601 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL 660
Query: 630 TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW 689
TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW
Sbjct: 661 TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW 720
Query: 690 RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS 743
RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS
Sbjct: 721 RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS 774
>gi|145199237 transcription elongation factor B polypeptide 3 binding
protein 1 [Homo sapiens]
Length = 1221
Score = 110 bits (274), Expect = 6e-24
Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 6/179 (3%)
Query: 211 ENFLLTKCNGSIADNSP-LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKIL 269
E F+ T D P ++ LDCEM T+ G ELTR+++V V D VKP+N+I+
Sbjct: 1042 EGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVVYDTFVKPDNEIV 1101
Query: 270 DYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDT 329
DY T FSG+T+ L + L+DVQ L ++ D +L+GHSL+ DL ALK+IH V+DT
Sbjct: 1102 DYNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDT 1161
Query: 330 SLLYVREQGRRFK--LKFLAKVILGKDIQCPDRL-GHDATEDARTILELARYFLKHGPK 385
S+L+ G +K L+ L L + IQ D + GH ++EDA + L + ++ K
Sbjct: 1162 SVLFPHRLGLPYKRSLRNLMADYLRQIIQ--DNVDGHSSSEDAGACMHLVIWKVREDAK 1218
>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
sapiens]
Length = 675
Score = 108 bits (271), Expect = 1e-23
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
++ LDCEMC T+ G ELTR+++V V D VKP+N+I+DY T FSG+T+ + +
Sbjct: 501 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 560
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
L VQ L + +L+GHSL+ DL ALK+IH V+DT++L+ G +K L+
Sbjct: 561 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 620
Query: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378
LA L + IQ + GH+++EDA L+L +
Sbjct: 621 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 652
>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
sapiens]
Length = 675
Score = 108 bits (271), Expect = 1e-23
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
++ LDCEMC T+ G ELTR+++V V D VKP+N+I+DY T FSG+T+ + +
Sbjct: 501 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 560
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
L VQ L + +L+GHSL+ DL ALK+IH V+DT++L+ G +K L+
Sbjct: 561 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 620
Query: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378
LA L + IQ + GH+++EDA L+L +
Sbjct: 621 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 652
>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
sapiens]
Length = 675
Score = 108 bits (271), Expect = 1e-23
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
++ LDCEMC T+ G ELTR+++V V D VKP+N+I+DY T FSG+T+ + +
Sbjct: 501 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 560
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
L VQ L + +L+GHSL+ DL ALK+IH V+DT++L+ G +K L+
Sbjct: 561 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 620
Query: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378
LA L + IQ + GH+++EDA L+L +
Sbjct: 621 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 652
>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
sapiens]
Length = 675
Score = 108 bits (271), Expect = 1e-23
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
++ LDCEMC T+ G ELTR+++V V D VKP+N+I+DY T FSG+T+ + +
Sbjct: 501 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 560
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
L VQ L + +L+GHSL+ DL ALK+IH V+DT++L+ G +K L+
Sbjct: 561 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 620
Query: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378
LA L + IQ + GH+++EDA L+L +
Sbjct: 621 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 652
>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
[Homo sapiens]
Length = 552
Score = 108 bits (271), Expect = 1e-23
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
++ LDCEMC T+ G ELTR+++V V D VKP+N+I+DY T FSG+T+ + +
Sbjct: 378 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 437
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
L VQ L + +L+GHSL+ DL ALK+IH V+DT++L+ G +K L+
Sbjct: 438 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 497
Query: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378
LA L + IQ + GH+++EDA L+L +
Sbjct: 498 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 529
>gi|126273519 exonuclease GOR [Homo sapiens]
Length = 675
Score = 108 bits (270), Expect = 2e-23
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
++ LDCEMC T+ G ELTR+++V V D VKP+N+I+DY T FSG+T+ + +
Sbjct: 501 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 560
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
L VQ L + +L+GHSL+ DL ALK+IH V+DT++L+ G +K L+
Sbjct: 561 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 620
Query: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378
LA L + IQ + GH+++EDA L+L +
Sbjct: 621 LAADYLAQIIQ-DSQDGHNSSEDASACLQLVMW 652
>gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1
[Homo sapiens]
Length = 325
Score = 77.4 bits (189), Expect = 4e-14
Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 20/166 (12%)
Query: 226 SPLFGLDCEMCLTS-KGR--ELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKI 282
S +DCEM T +GR EL R S+V+ G + D+ ++PE I DY T +SGIT++
Sbjct: 108 SKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQH 167
Query: 283 LN---PVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHP--YVIDTSLL--YVR 335
+ P K++ + LK V+VGH+L D +ALK +HP DT+ + ++
Sbjct: 168 MRKAVPFQVAQKEILKLLKG-----KVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLS 222
Query: 336 EQG----RRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELAR 377
E G R LK LA +L K IQ GH + EDA T +EL R
Sbjct: 223 EPGLHTRARVSLKDLALQLLHKKIQVGQH-GHSSVEDATTAMELYR 267
>gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2
[Homo sapiens]
Length = 353
Score = 68.9 bits (167), Expect = 2e-11
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 217 KCNGSIADNSP--LFGLDCEMCLTS-KGR--ELTRISLVAEGGCCVMDELVKPENKILDY 271
KC+G+ + P + +DCEM T KG L R S+V G + DE + P I+DY
Sbjct: 167 KCSGA-SQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDY 225
Query: 272 LTSFSGITKK-ILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTS 330
T +SGI K+ ++N T K + Q+ +L ++VGH++ D +AL+ HP +
Sbjct: 226 RTRWSGIRKQHMVN--ATPFKIARGQILKIL-TGKIVVGHAIHNDFKALQYFHPKSLTRD 282
Query: 331 LLYVREQGRR--------FKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375
++ R+ LK L K +L +DIQ + GH + EDA+ +EL
Sbjct: 283 TSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMEL 334
>gi|6857800 interferon stimulated exonuclease [Homo sapiens]
Length = 181
Score = 68.2 bits (165), Expect = 3e-11
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 222 IADNSPLFGLDCEMCLTSKGRE--LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGIT 279
+A + + +DCEM RE L R SLV G + D+ ++PE +I DY T SG+T
Sbjct: 1 MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT 60
Query: 280 KKIL---NPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALK--MIHPYVIDTS---L 331
+ + P ++ + LK L +VGH L D +ALK M + DTS L
Sbjct: 61 PQHMVGATPFAVARLEILQLLKGKL-----VVGHDLKHDFQALKEDMSGYTIYDTSTDRL 115
Query: 332 LYVR---EQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375
L+ + RR L+ L++ +L K IQ LGH + EDAR +EL
Sbjct: 116 LWREAKLDHCRRVSLRVLSERLLHKSIQ-NSLLGHSSVEDARATMEL 161
>gi|188536114 PAN2 polyA specific ribonuclease subunit homolog isoform
2 [Homo sapiens]
Length = 1202
Score = 67.8 bits (164), Expect = 4e-11
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 254 GCCVMDELVKPENKILDYLTSFSGI-----TKKILNPVTTKLKDVQRQLKALLPPDAVLV 308
G +D+ + + +++DYLT +SGI KI + T LK +L+ L+ V
Sbjct: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080
Query: 309 GHSLDLDLRALKMIHP--YVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDAT 366
GH L D R + ++ P V+DT L+ + R L+FLA L IQ HD+
Sbjct: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGET---HDSI 1137
Query: 367 EDARTILELARYFLK 381
EDART L+L R +L+
Sbjct: 1138 EDARTALQLYRKYLE 1152
>gi|188536112 PAN2 polyA specific ribonuclease subunit homolog isoform
1 [Homo sapiens]
Length = 1198
Score = 67.8 bits (164), Expect = 4e-11
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 254 GCCVMDELVKPENKILDYLTSFSGI-----TKKILNPVTTKLKDVQRQLKALLPPDAVLV 308
G +D+ + + +++DYLT +SGI KI + T LK +L+ L+ V
Sbjct: 1017 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1076
Query: 309 GHSLDLDLRALKMIHP--YVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDAT 366
GH L D R + ++ P V+DT L+ + R L+FLA L IQ HD+
Sbjct: 1077 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGET---HDSI 1133
Query: 367 EDARTILELARYFLK 381
EDART L+L R +L+
Sbjct: 1134 EDARTALQLYRKYLE 1148
>gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo
sapiens]
Length = 422
Score = 63.5 bits (153), Expect = 7e-10
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 231 LDCEMC-LTSKGRE--LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
LDCEM + KG E R+S+V + G CV D+ VKP + DY T+ SGI + L
Sbjct: 246 LDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQ-G 304
Query: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHP--YVIDTSL---LYVREQGRRFK 342
+L+ VQ+++ +L +LVGH+L DL+ L + HP + DT + + R
Sbjct: 305 EELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRPS 363
Query: 343 LKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375
L+ L++ ILG +Q + H + +DA+ + L
Sbjct: 364 LRLLSEKILGLQVQ---QAEHCSIQDAQAAMRL 393
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 35.4 bits (80), Expect = 0.19
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 570 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALN 627
++ LS +S + E+ LQE +F + +P++ ++GK K Y F++F SF A++ALN
Sbjct: 487 TLVLSNLSYSATEETLQE--VFEKATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALN 541
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 33.9 bits (76), Expect = 0.56
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 565 SENQGSIYLSGVSETFKEQLLQEPRLFLGLEAVI---LPKDLKSGKQKKYCFLKFKSFGS 621
+E ++++ + E+LL E LF VI +PKD K GK K++ F+ FK S
Sbjct: 6 AEADRTLFVGNLETKVTEELLFE--LFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVS 62
Query: 622 AQQALNILTGKDWKLKGR 639
A+N+L G KL GR
Sbjct: 63 VPYAMNLLNG--IKLYGR 78
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 33.9 bits (76), Expect = 0.56
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 564 DSENQGSIYLSGVS-ETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSA 622
+++ G +++ G++ ET ++ L E + + V+L KD ++ K + + F+ F+S A
Sbjct: 3 EADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 623 QQALNILTGK--DWKLKGRHALTPRHLHAWLRGLPPESTR 660
+ A + GK D K T + RG PP +R
Sbjct: 63 KAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSR 102
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 33.1 bits (74), Expect = 0.96
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 564 DSENQGSIYLSGVSETFKEQLLQEPRLFLG-LEAVILPKDLKSGKQKKYCFLKFKSFGSA 622
+++ G +++ G++ E+ L+ G + V+L KD ++ K + + F+ F+S A
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 623 QQALNILTGK--DWKLKGRHALTPRHLHAWLRGLPP 656
+ A + GK D K T + RG PP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPP 98
>gi|56790919 haspin [Homo sapiens]
Length = 798
Score = 32.0 bits (71), Expect = 2.1
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 629 LTGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAA 688
+T K WKL+ R +LT LR PP+ P + PPF L D
Sbjct: 96 VTPKRWKLRARPSLTVTPRRLGLRARPPQKCSTPCGPLRLPPFPSRDSGRLSPDLSVCGQ 155
Query: 689 WRWSRKIG---KLYNSL---CPGT 706
R ++G L++SL CPG+
Sbjct: 156 PRDGDELGISASLFSSLASPCPGS 179
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 571 IYLSGVSETFKEQLLQEPRLFLG-LEAVILPKDLKSGKQKKYCFLKFK 617
I++ G+S E+ ++E G +E++ LP D K+ K++ +CF+ FK
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 571 IYLSGVSETFKEQLLQEPRLFLG-LEAVILPKDLKSGKQKKYCFLKFK 617
I++ G+S E+ ++E G +E++ LP D K+ K++ +CF+ FK
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 571 IYLSGVSETFKEQLLQEPRLFLG-LEAVILPKDLKSGKQKKYCFLKFK 617
I++ G+S E+ ++E G +E++ LP D K+ K++ +CF+ FK
Sbjct: 165 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 212
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 571 IYLSGVSETFKEQLLQEPRLFLG-LEAVILPKDLKSGKQKKYCFLKFK 617
I++ G+S E+ ++E G +E++ LP D K+ K++ +CF+ FK
Sbjct: 165 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 212
>gi|238859599 RNA binding motif protein 34 isoform 2 [Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 506 TVYAGPFSKNCNLRALKRLFKSFGPVQSMTF 536
TV+ G CN + LK FK +G ++S+ F
Sbjct: 186 TVFVGNLPVTCNKKKLKSFFKEYGQIESVRF 216
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 31.2 bits (69), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 506 TVYAGPFSKNCNLRALKRLFKSFGPVQSMTF 536
TV+ G CN + LK FK +G ++S+ F
Sbjct: 186 TVFVGNLPVTCNKKKLKSFFKEYGQIESVRF 216
>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
Length = 1031
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 656 PESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKI 695
P+ PG++ P ++ + L L HP I AW+WSR++
Sbjct: 701 PKGVTCPGVKAEAPLSQRWTVPEL-LTHPGIHAWQWSREL 739
>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
Length = 1006
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 656 PESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKI 695
P+ PG++ P ++ + L L HP I AW+WSR++
Sbjct: 676 PKGVTCPGVKAEAPLSQRWTVPEL-LTHPGIHAWQWSREL 714
>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
Length = 1044
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 656 PESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKI 695
P+ PG++ P ++ + L L HP I AW+WSR++
Sbjct: 714 PKGVTCPGVKAEAPLSQRWTVPEL-LTHPGIHAWQWSREL 752
>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
Length = 1079
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 656 PESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKI 695
P+ PG++ P ++ + L L HP I AW+WSR++
Sbjct: 749 PKGVTCPGVKAEAPLSQRWTVPEL-LTHPGIHAWQWSREL 787
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,827,096
Number of Sequences: 37866
Number of extensions: 1363833
Number of successful extensions: 3447
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3389
Number of HSP's gapped (non-prelim): 59
length of query: 743
length of database: 18,247,518
effective HSP length: 110
effective length of query: 633
effective length of database: 14,082,258
effective search space: 8914069314
effective search space used: 8914069314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.