Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 22208967
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22208967 high mobility group AT-hook 1 isoform a [Homo
sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens] 216 4e-57
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens] 216 4e-57
gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens] 187 2e-48
gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens] 187 2e-48
gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens] 187 2e-48
gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens] 187 2e-48
gi|239753198 PREDICTED: hypothetical protein [Homo sapiens] 170 2e-43
gi|239747772 PREDICTED: hypothetical protein [Homo sapiens] 170 2e-43
gi|239741638 PREDICTED: hypothetical protein [Homo sapiens] 170 2e-43
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 83 4e-17
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 75 1e-14
gi|145199237 transcription elongation factor B polypeptide 3 bin... 42 1e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 39 7e-04
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 39 0.001
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 39 0.001
gi|153792074 proline rich 12 [Homo sapiens] 39 0.001
gi|59853162 thymine-DNA glycosylase [Homo sapiens] 38 0.002
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 37 0.003
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa... 37 0.003
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa... 37 0.003
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 37 0.004
gi|78482617 general transcription factor IIIC, polypeptide 2, be... 37 0.004
gi|4504205 general transcription factor IIIC, polypeptide 2, bet... 37 0.004
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 36 0.006
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 36 0.006
gi|4885375 histone cluster 1, H1c [Homo sapiens] 36 0.006
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 36 0.008
gi|122937227 U2-associated SR140 protein [Homo sapiens] 36 0.008
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 35 0.013
>gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 216 bits (549), Expect = 4e-57
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
>gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 216 bits (549), Expect = 4e-57
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
>gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 187 bits (474), Expect = 2e-48
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP KEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 50 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 187 bits (474), Expect = 2e-48
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP KEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 50 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 187 bits (474), Expect = 2e-48
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP KEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 50 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 187 bits (474), Expect = 2e-48
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP KEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 50 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 170 bits (431), Expect = 2e-43
Identities = 90/107 (84%), Positives = 92/107 (85%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPP KE SEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPP-----------KELSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKT KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 50 PKGSKNKGAAKTGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
>gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 170 bits (431), Expect = 2e-43
Identities = 90/107 (84%), Positives = 92/107 (85%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPP KE SEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPP-----------KELSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKT KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 50 PKGSKNKGAAKTGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
>gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 170 bits (431), Expect = 2e-43
Identities = 90/107 (84%), Positives = 92/107 (85%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPP KE SEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPP-----------KELSEVPTPKRPRGR 49
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
PKGSKNKGAAKT KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 50 PKGSKNKGAAKTGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 83.2 bits (204), Expect = 4e-17
Identities = 52/121 (42%), Positives = 67/121 (55%), Gaps = 27/121 (22%)
Query: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
MS + QP S Q + +KRGRGRPRKQ Q+EP+ P+PKRP
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQ------------QQEPTGEPSPKRP 48
Query: 58 RGRPKGSKNKGAAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEE 105
RGRPKGSKNK +K +K T ++PRGRP+K ++E EE SQES+EE
Sbjct: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEE 108
Query: 106 E 106
+
Sbjct: 109 D 109
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo
sapiens]
Length = 106
Score = 74.7 bits (182), Expect = 1e-14
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 17/94 (18%)
Query: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
MS + QP S Q + +KRGRGRPRKQ Q+EP+ P+PKRP
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQ------------QQEPTGEPSPKRP 48
Query: 58 RGRPKGSKNKGAAKT--RKTTTTPGRKPRGRPKK 89
RGRPKGSKNK +K +K T ++PRGRP+K
Sbjct: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 42.0 bits (97), Expect = 1e-04
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 16 QEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKT 75
Q KD T+ +GRGRP ++P + K+ + +P+R RP+G+K K ++ T
Sbjct: 394 QGKDKTKDKGRGRPVEKPR---------ADKKGPQASSPRRKAERPEGTKKKPSSATPVA 444
Query: 76 TTTPGR--KPRGRP 87
T+ GR +P RP
Sbjct: 445 TSGKGRPDRPARRP 458
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 39.3 bits (90), Expect = 7e-04
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPK 62
+ SKS + + G +G +P+ PP P G + P P G+P+
Sbjct: 289 QGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP--PPGKPQGPPPQGGNKPQGPPPPGKPQ 346
Query: 63 GSKNKGAAKTRKTTTTPGRKPRGRPKK 89
G +G +K+R + PG KP+G P++
Sbjct: 347 GPPPQGGSKSRSARSPPG-KPQGPPQQ 372
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPK 62
+ +KS + + G +G +P+ PP P G + P P G+P+
Sbjct: 227 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP--PPGKPQGPPPQGGNKPQGPPPPGKPQ 284
Query: 63 GSKNKGAAKTRKTTTTPGRKPRGRP 87
G +G +K+R + + PG KP+G P
Sbjct: 285 GPPPQGGSKSRSSRSPPG-KPQGPP 308
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKN 66
KS P + + G +G +P+ PP P G + P P G+P+G
Sbjct: 107 KSRSPRSPPGKPQGPPPQGGNQPQGPPP--PPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 164
Query: 67 KGAAKTRKTTTTPGRKPRGRP 87
+G K+R + + PG KP+G P
Sbjct: 165 QGDNKSRSSRSPPG-KPQGPP 184
Score = 32.3 bits (72), Expect = 0.084
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
++E S+ P G +G +P+ PP PG + ++ P P G+
Sbjct: 19 LNEDVSQEESPSLIAGNPQGAPPQGGNKPQG-PPSPPGKPQGPPPQGGNQPQGPPPPPGK 77
Query: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEK 92
P+G +G K + P KP+G P + +K
Sbjct: 78 PQGPPPQGGNKPQ--GPPPPGKPQGPPPQGDK 107
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVS---PGTALVGSQKEPSEVPTPKRPRG 59
++ S+SS+ K + G +G +P+ PP G G K P P P +P+G
Sbjct: 167 DNKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKPQG 223
Query: 60 RPKGSKNKGAAKTRKTTTTPGRKPRGRP 87
P NK ++ +P KP+G P
Sbjct: 224 PPPQGDNKS-----QSARSPPGKPQGPP 246
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 20 GTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTP 79
G +G +P+ PP PG + S+ + + P G+P+G +G + + P
Sbjct: 265 GPPPQGGNKPQGPPP--PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 322
Query: 80 GRKPRGRP 87
G KP+G P
Sbjct: 323 G-KPQGPP 329
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 20 GTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTP 79
G +G +P+ PP PG + ++ + + P G+P+G +G + + P
Sbjct: 203 GPPPQGGNKPQGPPP--PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPP 260
Query: 80 GRKPRGRP 87
G KP+G P
Sbjct: 261 G-KPQGPP 267
Score = 28.9 bits (63), Expect = 0.93
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 20 GTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTP 79
G +G +P+ PP PG + ++ + + P G+P+G +G + + P
Sbjct: 141 GPPPQGGNKPQGPPP--PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 198
Query: 80 GRKPRGRP 87
G KP+G P
Sbjct: 199 G-KPQGPP 205
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 38.9 bits (89), Expect = 0.001
Identities = 41/137 (29%), Positives = 53/137 (38%), Gaps = 30/137 (21%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQ-------------PPVSP----GTALVG 43
+ E S + +PL KQ KRG + R+ PP +P V
Sbjct: 1231 LKEGSKDNPEPLKCKQVWPKGTKRGLSKWRQNKERKTGFKLNLYTPPETPMEPDEQVTVE 1290
Query: 44 SQKEPSEVPTPKRPRGRPKGSKNKGAA------KTRKTT-------TTPGRKPRGRPKKL 90
QKE SE T P + K G A R+ T T+PG KP K
Sbjct: 1291 EQKETSEGKTSPSPIRIEEEVKETGEALLPQEENRREETCAPVSPNTSPGEKPEDDLIKP 1350
Query: 91 EKEEEEGISQESSEEEQ 107
E+EEEE +E EEE+
Sbjct: 1351 EEEEEEEEEEEEEEEEE 1367
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 44 SQKEPSEVPTPKR----PRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGIS 99
S++ P++V + + P RP + + K ++ + ++ E+EEEE
Sbjct: 1032 SRQSPAKVQSKNKYLHSPESRPVTGERGQLLELSKESSEEEEEEEDEEEEEEEEEEEEDE 1091
Query: 100 QESSEEEQ 107
+E EEE+
Sbjct: 1092 EEEEEEEE 1099
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 38.5 bits (88), Expect = 0.001
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVP----TPKRP 57
SE SS S +S++EK K + +PP + A S S+ P +P
Sbjct: 322 SEDSSDESDS-SSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKP 380
Query: 58 RGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKK--------LEKEEEEGISQE---SSEEE 106
G K S NK A TT +P KP PK+ L ++ + S+E SSEEE
Sbjct: 381 AGTTKNSSNKPAV----TTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEE 436
Query: 107 Q 107
+
Sbjct: 437 K 437
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRP 61
+ESS+ SS +S++E++ + +G+G PR Q P + GT+ + +Q + + + +
Sbjct: 514 AESSNSSSSDDSSEEEEE--KLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKK 571
Query: 62 KGS---KNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
K + G+ K RK + KK++ + + E++
Sbjct: 572 KAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKR 620
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 2 SESSSKSSQPLASKQEKDGTEKR-----GRGRPRKQPPVSPGTALVGSQKEPSEVPTPKR 56
S+S S SS+ K K +K+ G P K G A + + +
Sbjct: 471 SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE 530
Query: 57 PRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEE 96
+ + KGS A K T+ + + E+EEE+
Sbjct: 531 EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEK 570
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRP 61
S S + ++ + + + T K P KQ P + S SE K +
Sbjct: 431 SSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAV 490
Query: 62 KGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
K K A + KP K + S +SSEEE+
Sbjct: 491 KKKPQKVAGGAAPS------KPASAKKGKAESSNSSSSDDSSEEEE 530
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 SKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTR 73
+K ++DG R RGRPR +P P TA S P++ R RGR +G K + A TR
Sbjct: 1160 TKAKRDGPP-RPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRGRGRGRGRKAEEAGGTR 1218
Query: 74 KTTTTPGRKPRGRPK 88
P + PK
Sbjct: 1219 LEPLKPLKIKLSVPK 1233
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 19 DGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPK-RPRGRPKGSKNKGAAKTRKTTT 77
DG +RGR +P K P P P+ RPR RP + T T
Sbjct: 1150 DGPRRRGR-KPTKAKRDGP--------------PRPRGRPRIRPLEVPTTAGPASASTPT 1194
Query: 78 TPGRKPRGRPKKLEKEEEE 96
+KPRGR + ++ EE
Sbjct: 1195 DGAKKPRGRGRGRGRKAEE 1213
>gi|59853162 thymine-DNA glycosylase [Homo sapiens]
Length = 410
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 36 SPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEE 95
+P A+V Q+ P EVP P P P KG + RK TT ++P PKK + ++
Sbjct: 29 APNMAVVNEQQMPEEVPAP-APAQEPVQEAPKG--RKRKPRTTEPKQP-VEPKKPVESKK 84
Query: 96 EGISQESSEEEQ 107
G S +S E+++
Sbjct: 85 SGKSAKSKEKQE 96
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 6 SKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSK 65
S+SSQ K + G +G +P+ PP P G + P P G+P+G
Sbjct: 209 SRSSQSPPGKPQ--GPPPQGGNQPQGPPP--PPGKPQGPPPQGGNKPQGPPPPGKPQGPP 264
Query: 66 NKGAAKTRKTTTTPGRKPRGRPKK 89
+G +K++ + PG KP+G P++
Sbjct: 265 AQGGSKSQSARSPPG-KPQGPPQQ 287
Score = 33.1 bits (74), Expect = 0.050
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPK 62
+ +K P + G +G +P+ PP PG G + + +P+ P G+P+
Sbjct: 42 QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPP--PGKPQ-GPPPQGDKSRSPRSPPGKPQ 98
Query: 63 GSKNKGAAKTRKTTTTPGRKPRGRP 87
G +G + + PG KP+G P
Sbjct: 99 GPPPQGGNQPQGPPPPPG-KPQGPP 122
Score = 33.1 bits (74), Expect = 0.050
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 20 GTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTP 79
G +G RP+ PP PG G + + +P+ P G+P+G +G + + P
Sbjct: 120 GPPPQGGNRPQGPPP--PGKPQ-GPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 176
Query: 80 GRKPRGRPKKLEKEEE 95
G KP+G P + K+ +
Sbjct: 177 G-KPQGPPPQGGKKPQ 191
Score = 32.7 bits (73), Expect = 0.065
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPV--SPGTALVGSQKEPSEVPTPKRPRGRPKGS 64
KS P + + G +G +P+ PP P K+P P P +P+G P
Sbjct: 147 KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQG 206
Query: 65 KNKGAAKTRKTTTTPGRKPRGRP 87
K+R + + PG KP+G P
Sbjct: 207 D-----KSRSSQSPPG-KPQGPP 223
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 29 PRKQPPVSPGTALVGSQKEPSEVPTPKRPRG-------RPKGSKNKGAAKTRKTTTTPGR 81
PR P G G + P P +P+G RP+G G + R
Sbjct: 90 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSR 149
Query: 82 KPRGRPKKLEKEEEEGISQ 100
PR P K + +G +Q
Sbjct: 150 SPRSPPGKPQGPPPQGGNQ 168
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 38 GTALVGSQKEPSEVPTPKRPRGRPK--GSKNKGAAKTRKTTTTP-----GRKPRGRPKKL 90
G + G K P P +P+G P G+K +G K P R PR P K
Sbjct: 38 GPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97
Query: 91 EKEEEEGISQ 100
+ +G +Q
Sbjct: 98 QGPPPQGGNQ 107
>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
sapiens]
Length = 1782
Score = 37.0 bits (84), Expect = 0.003
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTAL--------VGSQKEPSE-VPT 53
E++SK S+P S ++ + T KR + PP G A+ +KEPS+ +
Sbjct: 224 EAASKESEPKQSTEKPEETLKREQSHAEISPPAESGQAVEECKEEGEEKQEKEPSKSAES 283
Query: 54 PKRPRGRPKGSKNK-----GAAKTRKTTTTPGRKPR-----GRPKKLEKEEEEGISQESS 103
P P GS K G A RK T+ RKP+ KK E+E E+ ++E
Sbjct: 284 PTSPVTSETGSTFKKFFTQGWAGWRKKTSF--RKPKEDEVEASEKKKEQEPEKVDTEEDG 341
Query: 104 EEE 106
+ E
Sbjct: 342 KAE 344
>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
sapiens]
Length = 1684
Score = 37.0 bits (84), Expect = 0.003
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTAL--------VGSQKEPSE-VPT 53
E++SK S+P S ++ + T KR + PP G A+ +KEPS+ +
Sbjct: 126 EAASKESEPKQSTEKPEETLKREQSHAEISPPAESGQAVEECKEEGEEKQEKEPSKSAES 185
Query: 54 PKRPRGRPKGSKNK-----GAAKTRKTTTTPGRKPR-----GRPKKLEKEEEEGISQESS 103
P P GS K G A RK T+ RKP+ KK E+E E+ ++E
Sbjct: 186 PTSPVTSETGSTFKKFFTQGWAGWRKKTSF--RKPKEDEVEASEKKKEQEPEKVDTEEDG 243
Query: 104 EEE 106
+ E
Sbjct: 244 KAE 246
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 24/118 (20%)
Query: 3 ESSSKSSQPLASKQEKD---GTEKRGRGRPR------------------KQPPVSPGTAL 41
ES + + SK+E+ G +KRGRG+ + K+ P + +
Sbjct: 324 ESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNESEDEIPQLVPIGKKTPANEKVEI 383
Query: 42 ---VGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEE 96
+K P++ P P PRG+ + + + TPG+ P +PK E+ +E
Sbjct: 384 QKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAESETPGKSPEKKPKIKEEAVKE 441
>gi|78482617 general transcription factor IIIC, polypeptide 2, beta
110kDa [Homo sapiens]
Length = 911
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 1 MSESSSKSSQPLASK--QEKDGTEKRGRGRPRK-QPPVSPGTALVGSQKEPSEVPTPKRP 57
+S SK S+P ASK +++ G ++G RP++ PP +P + Q P P PK+
Sbjct: 84 LSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKK- 142
Query: 58 RGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEE 95
+G K+K K + R PK+ ++ E
Sbjct: 143 ----RGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFE 176
>gi|4504205 general transcription factor IIIC, polypeptide 2, beta
110kDa [Homo sapiens]
Length = 911
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 1 MSESSSKSSQPLASK--QEKDGTEKRGRGRPRK-QPPVSPGTALVGSQKEPSEVPTPKRP 57
+S SK S+P ASK +++ G ++G RP++ PP +P + Q P P PK+
Sbjct: 84 LSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKK- 142
Query: 58 RGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEE 95
+G K+K K + R PK+ ++ E
Sbjct: 143 ----RGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFE 176
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 46 KEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEG-ISQESSE 104
+E E P P++P R + + GA + + + GR PRG +KL +E+ S+ESS
Sbjct: 880 EEQEEEPQPRKPGTRRE--RTLGAPASSERSAAGGRGPRGHKRKLNEEDAASESSRESSN 937
Query: 105 EEQ 107
E++
Sbjct: 938 EDE 940
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPR-KQPPVSPGTALVGSQKEPSEVPTPKRP 57
SESSS+S +S DG + RGR + K P G GS EP P P
Sbjct: 458 SESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLP 514
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 27 GRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKP 83
GRP+ QPP+ TA Q P+ P R GR +G+ + ++R P P
Sbjct: 192 GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGP 248
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 28 RPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRP 87
+P PP PG PS KRPRGRP+ + RK KPR R
Sbjct: 13 QPPPPPPEEPGAPA------PSPAAADKRPRGRPRKDGASPFQRARK-------KPRSRG 59
Query: 88 KKLEKEEEEGISQESSEEE 106
K ++E+ E++E E
Sbjct: 60 KTAVEDEDSMDGLETTETE 78
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 65 KNKGAAKTRKT----TTTPGRKPRGRPKKLEKEEEEGISQESSEE 105
K G ++T+K T G K R KK +K+EEE + SS +
Sbjct: 3839 KTDGGSETKKQRSKRTQRTGEKAAPRSKKRKKDEEEKQAMYSSTD 3883
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVP---TPKRPR 58
+ S K ++ AS + K +K G +P+K VG+ K+P + TPK+
Sbjct: 101 ASGSFKLNKKAASGEAKPKVKKAGGTKPKKP---------VGAAKKPKKAAGGATPKKSA 151
Query: 59 GR-PKGSKNKGAAK-TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSE 104
+ PK +K AA T+K +P + +PKK K + + ++++
Sbjct: 152 KKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKAAK 199
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 35.8 bits (81), Expect = 0.008
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 5 SSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPG----TALVGSQKEPSEVPTPKRPRGR 60
S + Q S + + R R + P S G + L Q++ ++ T PRGR
Sbjct: 567 SHRLKQSADSSSSRSSSSSSSSSRSRSRSPDSSGSRSHSPLRSKQRDVAQARTHANPRGR 626
Query: 61 PK-GSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESS 103
PK GS++ +++R + + R K G+S++SS
Sbjct: 627 PKMGSRSTSESRSRSRS-----RSRSASSNSRKSLSPGVSRDSS 665
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 26 RGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGA--AKTRKTTTTPGRKP 83
R PRK +S +K R R ++G+ A+ + TP R
Sbjct: 200 RHSPRKSSSISEEKGDSDDEKPRKGERRSSRVRQARAAKLSEGSQPAEEEEDQETPSRNL 259
Query: 84 RGRP----KKLEKEEEEGISQESSEEEQ 107
R R K E+EEEE +E EEE+
Sbjct: 260 RVRADRNLKTEEEEEEEEEEEEDDEEEE 287
Score = 26.6 bits (57), Expect = 4.6
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 12 LASKQEKDGTEKRGRGRP---RKQPPVSPGTALVGSQKEPS------------EVPTPKR 56
L + + TE++G RP PPV P Q+E E+ +R
Sbjct: 1099 LVDRPSETKTEEQGIPRPLHPPPPPPVQPPQHPRAEQREQERAVREQWAEREREMERRER 1158
Query: 57 PRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEE 106
R + ++K R + + R+ + R K EK+ E+ +E ++EE
Sbjct: 1159 TRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEK---KEKAQEE 1205
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 35.8 bits (81), Expect = 0.008
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 2 SESSS----KSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
S SSS KS P + + E+ + R R SP +++ PS TPKR
Sbjct: 936 SRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSKKAKRSPSGSRTPKRS 995
Query: 58 RGRPKGSKNKGAAKTRKTTTTPGRKPRGRPK 88
R S K K+R + +P R + K
Sbjct: 996 RRSRSRSPKKSGKKSRSQSRSPHRSHKKSKK 1026
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 18 KDGTEKRGRGRPRKQPPVSPGTALVGSQKEPS--EVPTPKRPRGRPKGSKNKGAAKTRKT 75
+ G R GR R +PP P + + P P P P GRP G + A R
Sbjct: 138 RSGDVLRRAGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPAGRPHGPAGRAAPGRRPG 197
Query: 76 TTTPGRKP--RGRPKKL 90
T R P RGR + L
Sbjct: 198 CTAQLRAPGRRGRQRLL 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.296 0.119 0.318
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,663,380
Number of Sequences: 37866
Number of extensions: 362252
Number of successful extensions: 3229
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 2143
Number of HSP's gapped (non-prelim): 1358
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.