Search of human proteins with 221316716

Search of human proteins with 221316716

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo
sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]      259   4e-70
gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]        228   1e-60
gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]       226   5e-60
gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]        83   7e-17
gi|4506189 proteasome alpha 7 subunit [Homo sapiens]                   82   1e-16
gi|23110942 proteasome alpha 5 subunit [Homo sapiens]                  78   2e-15
gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]        77   5e-15
gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]         77   5e-15
gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]        76   7e-15
gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]       66   7e-12
gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]         66   7e-12
gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]              65   2e-11
gi|23110944 proteasome alpha 6 subunit [Homo sapiens]                  64   3e-11
gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]        57   5e-09
gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]             48   3e-06
gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]             48   3e-06
gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]             48   3e-06
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]         30   0.71 
gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]       29   1.2  
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo...    28   1.6  
gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo...    28   1.6  
gi|13654276 queuine tRNA-ribosyltransferase 1 [Homo sapiens]           28   2.1  
gi|74048357 G protein-coupled receptor 126 alpha 1 precursor [Ho...    28   2.7  
gi|50355941 G protein-coupled receptor 126 beta 1 precursor [Hom...    28   2.7  
gi|74048422 G protein-coupled receptor 126 alpha 2 precursor [Ho...    28   2.7  
gi|74048403 G protein-coupled receptor 126 beta 2 precursor [Hom...    28   2.7  
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]      27   3.5  
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]      27   3.5  
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          27   6.0  
gi|37595541 tripartite motif-containing 69 isoform b [Homo sapiens]    26   7.8  

>gi|221316716 proteasome alpha 1 subunit isoform 3 [Homo sapiens]
          Length = 130

 Score =  259 bits (662), Expect = 4e-70
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
           MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1   MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60

Query: 61  KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSSILFML 120
           KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSSILFML
Sbjct: 61  KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSSILFML 120

Query: 121 AFMDMNFEGF 130
           AFMDMNFEGF
Sbjct: 121 AFMDMNFEGF 130


>gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]
          Length = 263

 Score =  228 bits (580), Expect = 1e-60
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
           MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1   MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60

Query: 61  KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
           KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS
Sbjct: 61  KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114


>gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]
          Length = 269

 Score =  226 bits (575), Expect = 5e-60
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61
           FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK
Sbjct: 8   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 67

Query: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
           KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS
Sbjct: 68  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 120


>gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
          Length = 250

 Score = 82.8 bits (203), Expect = 7e-17
 Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 4   NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 61
           ++YD  +TV+SP G + Q+EYA EAVK+GS  VG++     VL   K++ ++L   +  +
Sbjct: 3   SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62

Query: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
           KI  +D+H+ ++ AGLTADAR++ N  R EC   +   + P+ V  +   I +
Sbjct: 63  KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIAT 115


>gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
          Length = 248

 Score = 82.0 bits (201), Expect = 1e-16
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 2/111 (1%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 63
           YD  +TV+SP G + Q+EYA EAVK+GS  VG++ +   VL   K++ ++L   +  +KI
Sbjct: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62

Query: 64  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
             +D+++ ++ AGLTADAR++ N  R EC   R   + P+ V  +   I S
Sbjct: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIAS 113


>gi|23110942 proteasome alpha 5 subunit [Homo sapiens]
          Length = 241

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 3   RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 60
           R++YD  V  +SP+GR+ Q+EYA+EA+K GS  +G+++     L   KR  S L   +  
Sbjct: 5   RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64

Query: 61  KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSSIL 117
           +KI+ +D HIG +++GL ADA+ L +  R E  +  F ++  + V  +   + +  L
Sbjct: 65  EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLAL 121


>gi|23110939 proteasome alpha 3 subunit isoform 2 [Homo sapiens]
          Length = 248

 Score = 76.6 bits (187), Expect = 5e-15
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKI 63
           YD   + +SP GR+ Q+EYAM+AV+  S  +G++ K   V    K   S+L      K++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67

Query: 64  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
            +VD H+G+++AGL ADAR L +  R+E  + R  F   +P+  L   +
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRV 116


>gi|4506183 proteasome alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 255

 Score = 76.6 bits (187), Expect = 5e-15
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKI 63
           YD   + +SP GR+ Q+EYAM+AV+  S  +G++ K   V    K   S+L      K++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67

Query: 64  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
            +VD H+G+++AGL ADAR L +  R+E  + R  F   +P+  L   +
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRV 116


>gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]
          Length = 256

 Score = 76.3 bits (186), Expect = 7e-15
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 8/119 (6%)

Query: 4   NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 61
           ++YD  +TV+SP G + Q+EYA EAVK+GS  VG++     VL   K++ ++L   +  +
Sbjct: 3   SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62

Query: 62  KILHVDNHIGISIA------GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
           KI  +D+H+ ++ A      GLTADAR++ N  R EC   +   + P+ V  +   I +
Sbjct: 63  KICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIAT 121


>gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
          Length = 261

 Score = 66.2 bits (160), Expect = 7e-12
 Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 5   QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQK 61
           +YD+  T++SP+GR++Q+EYAMEA+      +G+ +    +L A +R   +L       +
Sbjct: 4   RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63

Query: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
           KI  ++  +  S+AG+T+DA +L N +R         +  P+P  +LV+ +
Sbjct: 64  KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTAL 114


>gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
          Length = 261

 Score = 66.2 bits (160), Expect = 7e-12
 Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 5   QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQK 61
           +YD+  T++SP+GR++Q+EYAMEA+      +G+ +    +L A +R   +L       +
Sbjct: 4   RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63

Query: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
           KI  ++  +  S+AG+T+DA +L N +R         +  P+P  +LV+ +
Sbjct: 64  KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTAL 114


>gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]
          Length = 234

 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 1   MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
           M    Y   +T +SP G++ QIEYA+ AV  G+ +VG+K+    VL   K+ +S L   +
Sbjct: 1   MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60

Query: 61  K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
              K+  +  HIG+  +G+  D R+L +  R+       V+  P+P ++LV  + S
Sbjct: 61  SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVAS 116


>gi|23110944 proteasome alpha 6 subunit [Homo sapiens]
          Length = 246

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSEL--AAHQKK 62
           +D  +T++SP+GR++Q+EYA +A+ QG  T V ++ K  AV+V  K+   +L  ++    
Sbjct: 9   FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68

Query: 63  ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
           +  +  +IG  + G+TAD+R      R E  + ++ +   +PV  L   I
Sbjct: 69  LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRI 118


>gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]
          Length = 212

 Score = 56.6 bits (135), Expect = 5e-09
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 4  NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
          ++YD  +TV+SP G + Q+EYA EAVK+GS  VG++  T    V + RA+ E  +H+
Sbjct: 3  SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGLTADARVVINRARVECQSHK 59


>gi|169206322 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQKKIL 64
           +D  + ++SP+ +++Q++YA +A+ QG  T V ++ K  AV+V  K    +L   +  + 
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLF 152

Query: 65  HVDNHIGISIAGLTADAR 82
            +  + G  I G+TAD+R
Sbjct: 153 KMTKNTGRVITGVTADSR 170


>gi|239750562 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQKKIL 64
           +D  + ++SP+ +++Q++YA +A+ QG  T V ++ K  AV+V  K    +L   +  + 
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLF 152

Query: 65  HVDNHIGISIAGLTADAR 82
            +  + G  I G+TAD+R
Sbjct: 153 KMTKNTGRVITGVTADSR 170


>gi|239744861 PREDICTED: similar to hCG30646 [Homo sapiens]
          Length = 272

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 6   YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQKKIL 64
           +D  + ++SP+ +++Q++YA +A+ QG  T V ++ K  AV+V  K    +L   +  + 
Sbjct: 93  FDRHLIIFSPKVQLYQVQYAFKAINQGGLTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLF 152

Query: 65  HVDNHIGISIAGLTADAR 82
            +  + G  I G+TAD+R
Sbjct: 153 KMTKNTGRVITGVTADSR 170


>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
          Length = 2481

 Score = 29.6 bits (65), Expect = 0.71
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 21  QIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGIS--IAGLT 78
           +++ +ME   + S     ++ TH  L    +A   L AH + + H  NH+ I+  +  + 
Sbjct: 540 ELQISMEVNDRAS-----QASTHGNLAVAYQA---LGAHDRALQHYQNHLNIARELRDIQ 591

Query: 79  ADARLLCNFMRQECLDSRFVFDRP 102
           ++AR L N     C    +V   P
Sbjct: 592 SEARALSNLGNFHCSRGEYVQAAP 615


>gi|156713444 proteasome alpha 4 subunit isoform 2 [Homo sapiens]
          Length = 190

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 73  SIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI 112
           S+AG+T+DA +L N +R         +  P+P  +LV+ +
Sbjct: 4   SVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTAL 43


>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
           sapiens]
          Length = 212

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 7   DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHV 66
           D+D T+  P     Q   +++ V  G   + L    H +L  L+  +  L   QKKIL +
Sbjct: 113 DSDTTI--PMDESLQFNSSLQKVHNGMDDLILDG--HNILDGLRTQRLTLKGTQKKILDI 168

Query: 67  DNHIGIS 73
            N +G+S
Sbjct: 169 ANMLGLS 175


>gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo
           sapiens]
          Length = 213

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 7   DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHV 66
           D+D T+  P     Q   +++ V  G   + L    H +L  L+  +  L   QKKIL +
Sbjct: 113 DSDTTI--PMDESLQFNSSLQKVHNGMDDLILDG--HNILDGLRTQRLTLKGTQKKILDI 168

Query: 67  DNHIGIS 73
            N +G+S
Sbjct: 169 ANMLGLS 175


>gi|13654276 queuine tRNA-ribosyltransferase 1 [Homo sapiens]
          Length = 403

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 2   FRNQYDNDVTVWSPQGRIHQIEYA------MEAVKQGSATVGLKSKTHAVLVALKRAQSE 55
           FR+ YD + T+ SP+  + QI+ A      M+     S+TV       A+  +++     
Sbjct: 127 FRSPYDGNETLLSPEKSV-QIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIRWLDRC 185

Query: 56  LAAHQKKILHVDNHIGISIAGLTADARLLC 85
           +AAHQ+      N   I   GL AD R  C
Sbjct: 186 IAAHQRP--DKQNLFAIIQGGLDADLRATC 213


>gi|74048357 G protein-coupled receptor 126 alpha 1 precursor [Homo
           sapiens]
          Length = 1221

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42  TH-AVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLL 84
           TH  VL+ L R+ S+L A   K+L   ++IG  I+ + + A LL
Sbjct: 841 THFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLL 884


>gi|50355941 G protein-coupled receptor 126 beta 1 precursor [Homo
           sapiens]
          Length = 1250

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42  TH-AVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLL 84
           TH  VL+ L R+ S+L A   K+L   ++IG  I+ + + A LL
Sbjct: 841 THFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLL 884


>gi|74048422 G protein-coupled receptor 126 alpha 2 precursor [Homo
           sapiens]
          Length = 1193

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42  TH-AVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLL 84
           TH  VL+ L R+ S+L A   K+L   ++IG  I+ + + A LL
Sbjct: 813 THFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLL 856


>gi|74048403 G protein-coupled receptor 126 beta 2 precursor [Homo
           sapiens]
          Length = 1222

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42  TH-AVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLL 84
           TH  VL+ L R+ S+L A   K+L   ++IG  I+ + + A LL
Sbjct: 813 THFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLL 856


>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
          Length = 4363

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 7    DNDVTVWSPQGRIHQIEY----AMEAVKQGSATVGLKSKTHAVLVALKRAQSELA 57
            DN      P+G +H ++     +ME+  Q      L  K H++ + L +  SELA
Sbjct: 1840 DNHAMRLPPEGILHNVKLEPHASMESGLQDPVNTKLDLKVHSLSLVLNKTTSELA 1894


>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
          Length = 4388

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 7    DNDVTVWSPQGRIHQIEY----AMEAVKQGSATVGLKSKTHAVLVALKRAQSELA 57
            DN      P+G +H ++     +ME+  Q      L  K H++ + L +  SELA
Sbjct: 1840 DNHAMRLPPEGILHNVKLEPHASMESGLQDPVNTKLDLKVHSLSLVLNKTTSELA 1894


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 29  VKQGSATV-GLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 87
           V QGSA + G + ++H  LV+L++ Q   AAH  +     + +G+S  G    A+ L   
Sbjct: 689 VPQGSAVLTGPQQQSHQ-LVSLQQLQQPTAAHPPQPGPQGSALGLSTQGQAFPAQQLLKV 747

Query: 88  MRQECLDSRFVFDRPLPVSRLVSLIGSS 115
                        +P P   ++SL+GS+
Sbjct: 748 NPTRARSGL----QPQPQPAVLSLLGSA 771


>gi|37595541 tripartite motif-containing 69 isoform b [Homo
          sapiens]
          Length = 341

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 28 AVKQGSATVGLKSKTHAVLVALKRAQSE-LAAHQKKILHVDNHIGISIAGL 77
          A++QG     LK      L  L+  Q E +AAH++  LH+  H+ +    L
Sbjct: 6  AIQQGQLETTLKE-----LQTLRNMQKEAIAAHKENKLHLQQHVSMEFLKL 51


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,080,532
Number of Sequences: 37866
Number of extensions: 139724
Number of successful extensions: 407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 33
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.