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Search of human proteins with 221139892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo
sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo sapi... 387 e-108
gi|221139896 hypothetical protein LOC339804 isoform 2 [Homo sapi... 231 4e-61
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 38 0.005
gi|116235474 LKB1 interacting protein [Homo sapiens] 35 0.052
gi|44890065 hypothetical protein LOC6936 [Homo sapiens] 34 0.068
gi|17975763 myelin transcription factor 1 [Homo sapiens] 33 0.20
gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sa... 33 0.20
gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sa... 33 0.20
gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sa... 33 0.20
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 32 0.34
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 32 0.34
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.44
gi|195232763 ADAM metallopeptidase domain 29 preproprotein [Homo... 31 0.58
gi|195232761 ADAM metallopeptidase domain 29 preproprotein [Homo... 31 0.58
gi|195232759 ADAM metallopeptidase domain 29 preproprotein [Homo... 31 0.58
gi|73765552 ADAM metallopeptidase domain 29 preproprotein [Homo ... 31 0.58
gi|46276863 parathymosin [Homo sapiens] 31 0.58
gi|87299628 biorientation of chromosomes in cell division 1-like... 31 0.58
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 31 0.58
gi|148491082 disabled homolog 2 [Homo sapiens] 31 0.76
gi|108773804 Fraser syndrome 1 [Homo sapiens] 31 0.76
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 31 0.76
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 31 0.76
gi|217330641 IWS1 homolog [Homo sapiens] 30 0.99
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 30 0.99
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 30 0.99
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens] 30 0.99
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens] 30 0.99
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens] 30 0.99
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 30 1.3
>gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo
sapiens]
Length = 194
Score = 387 bits (995), Expect = e-108
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MSLLAKPMSFETTAITFFIILLICLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGV 60
MSLLAKPMSFETTAITFFIILLICLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGV
Sbjct: 1 MSLLAKPMSFETTAITFFIILLICLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGV 60
Query: 61 DCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQ 120
DCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQ
Sbjct: 61 DCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQ 120
Query: 121 INEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEY 180
INEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEY
Sbjct: 121 INEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEY 180
Query: 181 PTPRSYTREHKERK 194
PTPRSYTREHKERK
Sbjct: 181 PTPRSYTREHKERK 194
>gi|221139896 hypothetical protein LOC339804 isoform 2 [Homo
sapiens]
Length = 115
Score = 231 bits (588), Expect = 4e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 80 MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 139
MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD
Sbjct: 1 MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 60
Query: 140 GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 194
GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK
Sbjct: 61 GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 115
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 38.1 bits (87), Expect = 0.005
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 108 ENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRP 161
E D E EEE + E+ E E E +EE++ +Q +T+ SV +KRP
Sbjct: 1073 EEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRLTKPQSVAIKRKRP 1126
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 88 PMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDG 140
P+ P + ++ L P E + E EEE + E+ E E G +++ DG
Sbjct: 1332 PVSPNTSPGEKPEDDLIKPEEEEEEEEEEEEEEEEEEGEEEEGGGNVEKDPDG 1384
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 34.7 bits (78), Expect = 0.052
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 96 QRQSKEVLATPLENRRDMEAEEENQINE--KQEPENAGETGQEEDD 139
Q+ S+EV A P E + E +EE + E +Q E AGE +EE D
Sbjct: 495 QKMSEEVRAEPQEEEEEKEGKEEKEEGEMVEQGEEEAGEEEEEEQD 540
>gi|44890065 hypothetical protein LOC6936 [Homo sapiens]
Length = 781
Score = 34.3 bits (77), Expect = 0.068
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 27/133 (20%)
Query: 70 SNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPEN 129
S P+DHE+ + +RP L QR ++E ++ E + + +E+ E+Q+
Sbjct: 180 SEPDDHEK------RIPFTLRPQTLRQRMAEESISRNEETSEESQEDEKQDTWEQQQMRK 233
Query: 130 AGETGQEEDDGL---------QKIHTSVTRTPSVVESQKRPLK-GVTFSREVIVVDLGNE 179
A + +E D L +K TS++ P +E K+ L +T +E
Sbjct: 234 AVKIIEERDIDLSCGNGSSKVKKFDTSISFPPVNLEIIKKQLNTRLTLLQE--------- 284
Query: 180 YPTPRSYTREHKE 192
T RS+ RE+++
Sbjct: 285 --THRSHLREYEK 295
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 56 ANGGVDCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKE------VLATPLEN 109
A G K + PED E ++ + + P L S+E +L+ E+
Sbjct: 202 AEGAASEEGEKGLFIQPEDAEEVVEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEED 261
Query: 110 RRDMEAEEENQINEKQEPENAGETGQEEDD 139
+ E EEE + +E++E E E +EE++
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEE 291
Score = 28.1 bits (61), Expect = 4.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 92 GILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 139
GIL + E E + E EEE + E++E E E +EE++
Sbjct: 253 GILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEE 300
Score = 27.3 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 108 ENRRDMEAEEENQINEKQEPENAGETGQEEDD 139
E D E EEE + E++E E E +EE++
Sbjct: 270 EEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEE 301
>gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo
sapiens]
Length = 448
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 67 VVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQE 126
++ S +D + LN + G L ++ KE+LA L NR + E+ I ++
Sbjct: 256 IINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRT 315
Query: 127 PENAGETGQEEDDGLQKIHTSVTRTPSVVESQKR 160
E E Q+ + K+ +++ P+V E ++R
Sbjct: 316 DEERQEIRQQIE---MKLSKRLSQRPAVEELERR 346
>gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo
sapiens]
Length = 518
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 67 VVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQE 126
++ S +D + LN + G L ++ KE+LA L NR + E+ I ++
Sbjct: 326 IINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRT 385
Query: 127 PENAGETGQEEDDGLQKIHTSVTRTPSVVESQKR 160
E E Q+ + K+ +++ P+V E ++R
Sbjct: 386 DEERQEIRQQIE---MKLSKRLSQRPAVEELERR 416
>gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo
sapiens]
Length = 559
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 67 VVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQE 126
++ S +D + LN + G L ++ KE+LA L NR + E+ I ++
Sbjct: 367 IINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRT 426
Query: 127 PENAGETGQEEDDGLQKIHTSVTRTPSVVESQKR 160
E E Q+ + K+ +++ P+V E ++R
Sbjct: 427 DEERQEIRQQIE---MKLSKRLSQRPAVEELERR 457
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 32.0 bits (71), Expect = 0.34
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 68 VTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEP 127
VTS D E ++ + I+ + + + P + + + ++EK E
Sbjct: 686 VTSQQNDIENTVLTIEPETETALAEIITETEVPALNKCPTKYPKTKKHLVNEWLSEKNE- 744
Query: 128 ENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYT 187
+TG+ D GL + +T P V+ +Q L G+T+S V Y TP+ Y
Sbjct: 745 ----KTGKPSD-GLSERPLRITTDPEVLATQLNSLPGLTYSPHV--------YSTPKHYI 791
Query: 188 R 188
R
Sbjct: 792 R 792
Score = 28.5 bits (62), Expect = 3.7
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 41 QGRKGKETKKVPCT-DANGGVDCAAAKVVTSNPEDHERILMQV-MNLNVPMRPGILVQRQ 98
+G+K K+ K T + N +DC +PE +R L + ++++ P + +
Sbjct: 491 KGKKDKDISKEKDTQNQNITLDCEGTTNKMKSPETKQRKLSPLRLSVSNNQEPDFIDDIE 550
Query: 99 SKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQE 136
K TP+ N +ME+EE QI E++ E E
Sbjct: 551 EK----TPISNEVEMESEE--QIAERKRKMTREERKME 582
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 32.0 bits (71), Expect = 0.34
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 68 VTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEP 127
VTS D E ++ + I+ + + + P + + + ++EK E
Sbjct: 686 VTSQQNDIENTVLTIEPETETALAEIITETEVPALNKCPTKYPKTKKHLVNEWLSEKNE- 744
Query: 128 ENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYT 187
+TG+ D GL + +T P V+ +Q L G+T+S V Y TP+ Y
Sbjct: 745 ----KTGKPSD-GLSERPLRITTDPEVLATQLNSLPGLTYSPHV--------YSTPKHYI 791
Query: 188 R 188
R
Sbjct: 792 R 792
Score = 28.5 bits (62), Expect = 3.7
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 41 QGRKGKETKKVPCT-DANGGVDCAAAKVVTSNPEDHERILMQV-MNLNVPMRPGILVQRQ 98
+G+K K+ K T + N +DC +PE +R L + ++++ P + +
Sbjct: 491 KGKKDKDISKEKDTQNQNITLDCEGTTNKMKSPETKQRKLSPLRLSVSNNQEPDFIDDIE 550
Query: 99 SKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQE 136
K TP+ N +ME+EE QI E++ E E
Sbjct: 551 EK----TPISNEVEMESEE--QIAERKRKMTREERKME 582
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 31.6 bits (70), Expect = 0.44
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 101 EVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKI 144
EV P E + E EEE++ +E++E E G E D+ +K+
Sbjct: 526 EVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKV 569
>gi|195232763 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 31.2 bits (69), Expect = 0.58
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 24 CLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGVDCAAAKVVTSNPEDHERILMQVM 83
C +CILLL+V+F+ C R K++K + V T + ++ E+I +
Sbjct: 677 CYLCILLLIVLFILLCCLYRLCKKSKPIK----------KQQDVQTPSAKEEEKIQRRPH 726
Query: 84 NLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQK 143
L +P ++ QS+ + + + M ++ + + Q + + +
Sbjct: 727 ELPPQSQPWVM-PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQ 785
Query: 144 IHTSVTRT---PSVVESQKRP 161
H +T + P V SQ++P
Sbjct: 786 SHPQLTPSQSQPPVTPSQRQP 806
>gi|195232761 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 31.2 bits (69), Expect = 0.58
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 24 CLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGVDCAAAKVVTSNPEDHERILMQVM 83
C +CILLL+V+F+ C R K++K + V T + ++ E+I +
Sbjct: 677 CYLCILLLIVLFILLCCLYRLCKKSKPIK----------KQQDVQTPSAKEEEKIQRRPH 726
Query: 84 NLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQK 143
L +P ++ QS+ + + + M ++ + + Q + + +
Sbjct: 727 ELPPQSQPWVM-PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQ 785
Query: 144 IHTSVTRT---PSVVESQKRP 161
H +T + P V SQ++P
Sbjct: 786 SHPQLTPSQSQPPVTPSQRQP 806
>gi|195232759 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 31.2 bits (69), Expect = 0.58
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 24 CLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGVDCAAAKVVTSNPEDHERILMQVM 83
C +CILLL+V+F+ C R K++K + V T + ++ E+I +
Sbjct: 677 CYLCILLLIVLFILLCCLYRLCKKSKPIK----------KQQDVQTPSAKEEEKIQRRPH 726
Query: 84 NLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQK 143
L +P ++ QS+ + + + M ++ + + Q + + +
Sbjct: 727 ELPPQSQPWVM-PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQ 785
Query: 144 IHTSVTRT---PSVVESQKRP 161
H +T + P V SQ++P
Sbjct: 786 SHPQLTPSQSQPPVTPSQRQP 806
>gi|73765552 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 31.2 bits (69), Expect = 0.58
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 24 CLICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGVDCAAAKVVTSNPEDHERILMQVM 83
C +CILLL+V+F+ C R K++K + V T + ++ E+I +
Sbjct: 677 CYLCILLLIVLFILLCCLYRLCKKSKPIK----------KQQDVQTPSAKEEEKIQRRPH 726
Query: 84 NLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQK 143
L +P ++ QS+ + + + M ++ + + Q + + +
Sbjct: 727 ELPPQSQPWVM-PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQ 785
Query: 144 IHTSVTRT---PSVVESQKRP 161
H +T + P V SQ++P
Sbjct: 786 SHPQLTPSQSQPPVTPSQRQP 806
>gi|46276863 parathymosin [Homo sapiens]
Length = 102
Score = 31.2 bits (69), Expect = 0.58
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 96 QRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDG 140
+++ E A+ E ++++ EEEN E E E E G+EED+G
Sbjct: 20 KKEKVEEKASRKERKKEVVEEEENGAEE--EEEETAEDGEEEDEG 62
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 31.2 bits (69), Expect = 0.58
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 50 KVPCTDANGGVDCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILV---------QRQSK 100
KV TD + + SN + E+I+ V + + V +R+ +
Sbjct: 2912 KVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGRKPKRSLTVSDDAESSEPERKRQ 2971
Query: 101 EVLATPLENRRDMEAEEENQINEKQEPENA 130
+ ++ P+E++++ E++EE + E+ EP A
Sbjct: 2972 KSVSDPVEDKKEQESDEEEEEEEEDEPSGA 3001
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 31.2 bits (69), Expect = 0.58
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 108 ENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTF 167
E D E EEE + E++EP+ G+ G++ +KI T P+ V S P TF
Sbjct: 379 EEEEDEEEEEEEEEEEEEEPQQRGQ-GEKSATPSRKILDPNTGEPAPVLSSPPPADVSTF 437
>gi|148491082 disabled homolog 2 [Homo sapiens]
Length = 770
Score = 30.8 bits (68), Expect = 0.76
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 116 EEENQINEKQEP-ENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRP-LKGVTFSREVIV 173
EE+ +I E + EN E DD K+ + V + + P L T S+++++
Sbjct: 177 EEKKKIEEASKAVENGSEALMILDDQTNKLKSGVDQMDLFGDMSTPPDLNSPTESKDILL 236
Query: 174 VDLGNEYPTPRSYTREH 190
VDL +E T ++ RE+
Sbjct: 237 VDLNSEIDTNQNSLREN 253
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 30.8 bits (68), Expect = 0.76
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 25 LICILLLLVVFLYKCFQGRK-GKETKKVPCTD 55
L I+LLL+VFL CF RK K+ KK P D
Sbjct: 3909 LAAIMLLLLVFLVACFINRKCQKQRKKKPAED 3940
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 30.8 bits (68), Expect = 0.76
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 57 NGGVDCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAE 116
NG D + S + E IL + +N ++ ++ L +EVL++ + + ME +
Sbjct: 44 NGSEDASKDSGEGSCSDSEENILEEELNEDIKVKEEQLKNSAEEEVLSSEKQLIK-MEKK 102
Query: 117 EENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDL 176
EE + E+ + E +E++ +K +V E+ T + V+
Sbjct: 103 EEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATVSENVAASAAATTPATSPPAVNT 162
Query: 177 GNEYPTPRSYTRE 189
PT + T E
Sbjct: 163 SPSVPTTTTATEE 175
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 30.8 bits (68), Expect = 0.76
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 57 NGGVDCAAAKVVTSNPEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAE 116
NG D + S + E IL + +N ++ ++ L +EVL++ + + ME +
Sbjct: 44 NGSEDASKDSGEGSCSDSEENILEEELNEDIKVKEEQLKNSAEEEVLSSEKQLIK-MEKK 102
Query: 117 EENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDL 176
EE + E+ + E +E++ +K +V E+ T + V+
Sbjct: 103 EEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATVSENVAASAAATTPATSPPAVNT 162
Query: 177 GNEYPTPRSYTRE 189
PT + T E
Sbjct: 163 SPSVPTTTTATEE 175
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 0.99
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 98 QSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQ-------EEDDGLQKIH 145
QS + ATP+++ RD ++ E+ +NE+ + G + + +DGL K H
Sbjct: 10 QSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVERHSENETSDREDGLPKGH 64
>gi|57222563 colonic and hepatic tumor over-expressed protein isoform
b [Homo sapiens]
Length = 1972
Score = 30.4 bits (67), Expect = 0.99
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 29 LLLLVVFLYKCFQGRKGKETKK----VPCTDANGGVDCAAAKVVTSNPEDHERIL--MQV 82
L+L V LY C + R G KK +P + G + A P +++L ++
Sbjct: 1016 LILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEK 1075
Query: 83 MNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPE 128
+N+P +P + SK + + + A E+ I+ EP+
Sbjct: 1076 AKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPK 1121
>gi|57164942 colonic and hepatic tumor over-expressed protein isoform
a [Homo sapiens]
Length = 2032
Score = 30.4 bits (67), Expect = 0.99
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 29 LLLLVVFLYKCFQGRKGKETKK----VPCTDANGGVDCAAAKVVTSNPEDHERIL--MQV 82
L+L V LY C + R G KK +P + G + A P +++L ++
Sbjct: 1016 LILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEK 1075
Query: 83 MNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPE 128
+N+P +P + SK + + + A E+ I+ EP+
Sbjct: 1076 AKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPK 1121
>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
Length = 981
Score = 30.4 bits (67), Expect = 0.99
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 102 VLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 139
+ P+E D + EE E++E E E G+EEDD
Sbjct: 910 ITVNPMETYEDQHSSEEE---EEEEEEEESEDGEEEDD 944
>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
Length = 971
Score = 30.4 bits (67), Expect = 0.99
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 102 VLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 139
+ P+E D + EE E++E E E G+EEDD
Sbjct: 900 ITVNPMETYEDQHSSEEE---EEEEEEEESEDGEEEDD 934
>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
Length = 405
Score = 30.4 bits (67), Expect = 0.99
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 55 DANGGVDCAAAKVVTSN--PEDHERILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRD 112
D + VD AA + +T PE+ +Q+ +++VP L++ + TPL +
Sbjct: 187 DEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTPLPGQAP 246
Query: 113 MEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTR 150
EAE + A T +E D L +I + R
Sbjct: 247 PEAEGATAA-ASEAAAGASATDEEARDELTEIFKKIRR 283
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 30.0 bits (66), Expect = 1.3
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 11/177 (6%)
Query: 25 LICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGV--DCAAAKVVTSNPEDHE-----R 77
LI +LLLL+VF + R+ ++ +++P A+ + V P+ E R
Sbjct: 213 LIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRSSR 272
Query: 78 ILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEE 137
+ + VP+R ++ E P + E+E ++ G G+E+
Sbjct: 273 LQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHPGEEK 332
Query: 138 DDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 194
D +K + T VES + K R +++G P RS + ++R+
Sbjct: 333 VDFEKK--AAAEATQETVESLMQKFK--ESFRANTPIEIGQLQPPLRSTSAGKRKRR 385
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,446,987
Number of Sequences: 37866
Number of extensions: 332761
Number of successful extensions: 2749
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 372
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.