Guide to the Human Genome
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Name: TMEM25 Sequence: fasta or formatted (306aa) NCBI GI: 221139840
Description:

transmembrane protein 25 isoform 5

Not currently referenced in the text

Other entries for this name:
alt prot {322aa} transmembrane protein 25 isoform 2
alt prot {218aa} transmembrane protein 25 isoform 3
alt prot {351aa} transmembrane protein 25 isoform 4
alt prot {322aa} transmembrane protein 25 isoform 2
alt prot {366aa} transmembrane protein 25 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         29           2
 C cysteine            0.7          2           1
 D aspartate           4.9         15           1
 E glutamate           4.2         13           1
 F phenylalanine       2.0          6           1
 G glycine             7.2         22           2
 H histidine           2.3          7           1
 I isoleucine          1.6          5           1
 K lysine              1.6          5           1
 L leucine            13.7         42           4
 M methionine          1.0          3           1
 N asparagine          6.9         21           2
 P proline             8.2         25           2
 Q glutamine           6.2         19           1
 R arginine            6.5         20           2
 S serine              8.5         26           2
 T threonine           5.9         18           1
 V valine              6.5         20           2
 W tryptophan          1.6          5           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 25 isoform 5 
TMEM25                0.966   transmembrane protein 25 isoform 2 
TMEM25                0.966   transmembrane protein 25 isoform 2 
TMEM25                0.958   transmembrane protein 25 isoform 4 
TMEM25                0.929   transmembrane protein 25 isoform 1 
TMEM25                0.529   transmembrane protein 25 isoform 3 
HMCN1                 0.037   hemicentin 1 
SIGLEC1               0.027   sialoadhesin precursor 
NPHS1                 0.025   nephrin precursor 
KIRREL2               0.025   kin of IRRE-like 2 isoform c 
KIRREL2               0.025   kin of IRRE-like 2 isoform b 
KIRREL2               0.025   kin of IRRE-like 2 isoform a 
KIRREL                0.024   kin of IRRE like 
LOC147645             0.020   PREDICTED: hypothetical protein 
LOC147645             0.020   PREDICTED: hypothetical protein 
LOC147645             0.020   PREDICTED: hypothetical protein 
CEACAM1               0.020   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.020   carcinoembryonic antigen-related cell adhesion molec...
HMCN2                 0.020   PREDICTED: hemicentin 2 
HMCN2                 0.020   PREDICTED: hemicentin 2 
HMCN2                 0.020   PREDICTED: hemicentin 2 
CEACAM5               0.019   carcinoembryonic antigen-related cell adhesion molec...
NTRK3                 0.017   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.017   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.017   neurotrophic tyrosine kinase, receptor, type 3 isofo...
LOC651845             0.014   PREDICTED: similar to MHC class II antigen 
LRIG1                 0.014   leucine-rich repeats and immunoglobulin-like domains...
SPEG                  0.014   SPEG complex locus 
AGER                  0.014   advanced glycosylation end product-specific receptor...
MYLK                  0.014   myosin light chain kinase isoform 3A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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