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Search of human proteins with 221139701
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221139701 LysM, putative peptidoglycan-binding, domain
containing 2 isoform 2 [Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221139701 LysM, putative peptidoglycan-binding, domain contai... 247 2e-66
gi|23503313 LysM, putative peptidoglycan-binding, domain contain... 247 2e-66
gi|211938454 LysM, putative peptidoglycan-binding, domain contai... 80 3e-16
gi|47086487 LysM, putative peptidoglycan-binding, domain contain... 80 3e-16
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 36 0.009
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 36 0.009
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 32 0.096
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 32 0.12
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens] 32 0.12
gi|124248554 melanoma antigen family A, 9 -like [Homo sapiens] 32 0.16
gi|4885473 melanoma antigen family A, 9 [Homo sapiens] 32 0.16
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 31 0.21
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap... 31 0.21
gi|53829385 leucine rich repeat containing 37B [Homo sapiens] 31 0.21
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 31 0.28
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 31 0.28
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 30 0.47
gi|9966841 cell death regulator aven [Homo sapiens] 30 0.47
gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 30 0.47
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 30 0.47
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 30 0.47
gi|29788987 solute carrier family 24 member 4 isoform 3 [Homo sa... 30 0.47
gi|29788985 solute carrier family 24 member 4 isoform 2 precurso... 30 0.47
gi|24111228 solute carrier family 24 member 4 isoform 1 precurso... 30 0.47
gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens] 30 0.47
gi|48762947 variable charge, X-linked 3A [Homo sapiens] 30 0.62
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 29 0.81
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 29 0.81
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 29 0.81
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 29 0.81
>gi|221139701 LysM, putative peptidoglycan-binding, domain
containing 2 isoform 2 [Homo sapiens]
Length = 124
Score = 247 bits (630), Expect = 2e-66
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV 60
MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV
Sbjct: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV 60
Query: 61 AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS 120
AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS
Sbjct: 61 AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS 120
Query: 121 LYHS 124
LYHS
Sbjct: 121 LYHS 124
>gi|23503313 LysM, putative peptidoglycan-binding, domain containing
2 isoform 1 [Homo sapiens]
Length = 215
Score = 247 bits (630), Expect = 2e-66
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV 60
MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV
Sbjct: 92 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV 151
Query: 61 AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS 120
AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS
Sbjct: 152 AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS 211
Query: 121 LYHS 124
LYHS
Sbjct: 212 LYHS 215
>gi|211938454 LysM, putative peptidoglycan-binding, domain
containing 1 isoform b [Homo sapiens]
Length = 179
Score = 80.5 bits (197), Expect = 3e-16
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-- 58
MEQIKRAN+L+TND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 72
Query: 59 -----------VVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKL 106
GE LP P + P ++SA DFL++LD QI LS + AA+KL
Sbjct: 73 TERKKQETGAGRANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKL 128
Query: 107 KE 108
K+
Sbjct: 129 KK 130
>gi|47086487 LysM, putative peptidoglycan-binding, domain containing
1 isoform a [Homo sapiens]
Length = 227
Score = 80.5 bits (197), Expect = 3e-16
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-- 58
MEQIKRAN+L+TND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 61 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 120
Query: 59 -----------VVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKL 106
GE LP P + P ++SA DFL++LD QI LS + AA+KL
Sbjct: 121 TERKKQETGAGRANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKL 176
Query: 107 KE 108
K+
Sbjct: 177 KK 178
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 35.8 bits (81), Expect = 0.009
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 25 PVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQ-PVQPEEV 83
P++ PLL G + E+ T D S + + EPV PPSP +D + + P +
Sbjct: 116 PLLRPSPLLATGQPA--GSEDLTKDRSLTGKLEPV------SPPSPPHTDPELELVPPRL 167
Query: 84 SARDFLQ---RLDLQIKLSTQAAKKLKEESRDEESPYA 118
S + +Q R+D +I + Q KLK++ + E A
Sbjct: 168 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 205
Score = 26.9 bits (58), Expect = 4.0
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 SIDSPENETA-DNSFSQEEEPVVAGEDLPPPS----PQESDVQPVQPEEVS 84
SI SP E A D + + P G D PPP P E P +P S
Sbjct: 733 SIPSPHTEAAKDTGQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPAS 783
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 35.8 bits (81), Expect = 0.009
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 25 PVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQ-PVQPEEV 83
P++ PLL G + E+ T D S + + EPV PPSP +D + + P +
Sbjct: 116 PLLRPSPLLATGQPA--GSEDLTKDRSLTGKLEPV------SPPSPPHTDPELELVPPRL 167
Query: 84 SARDFLQ---RLDLQIKLSTQAAKKLKEESRDEESPYA 118
S + +Q R+D +I + Q KLK++ + E A
Sbjct: 168 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 205
Score = 26.9 bits (58), Expect = 4.0
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 SIDSPENETA-DNSFSQEEEPVVAGEDLPPPS----PQESDVQPVQPEEVS 84
SI SP E A D + + P G D PPP P E P +P S
Sbjct: 750 SIPSPHTEAAKDTGQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPAS 800
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 32.3 bits (72), Expect = 0.096
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 2 EQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVA 61
EQ NKL + C LK+ N+P ++ G+ + + + E + + +P +
Sbjct: 504 EQFDAKNKLTCSIC--LKEFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLP 561
Query: 62 GEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKL 98
PPP PQ + PE S + + + +KL
Sbjct: 562 PPPPPPPPPQ------LPPEAESLTPMVMPVSVPVKL 592
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 32.0 bits (71), Expect = 0.12
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 40 IDSPENETAD-NSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFL--QRLDLQI 96
+ S ++E + + S E PVVA D P +P+++D Q S + RL +
Sbjct: 515 LPSEDDEAEELKALSPAESPVVAWSD--PTTPKDTDGQDRAASTASTNSAIINDRLQELV 572
Query: 97 KLSTQAAKKLKEE------SRDEESP 116
KL + +K+KE+ + DEESP
Sbjct: 573 KLFKERTEKVKEKLIDPDVTSDEESP 598
Score = 27.7 bits (60), Expect = 2.4
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 57 EPVVAGEDLPPP----------SPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKL 106
EP + E++ PP SPQ ++V P EE A + + R +I+ + ++
Sbjct: 301 EPDLVLEEVEPPWEDAHQDVSTSPQGTEVVPAYEEENKAVEKMPRELSRIEEEKEDEEEE 360
Query: 107 KEESRDEESPYATSL 121
+EE +EE T +
Sbjct: 361 EEEEEEEEEEEVTEV 375
>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
Length = 758
Score = 32.0 bits (71), Expect = 0.12
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 43 PENETADNSFSQEEE----PVVAGEDLPPPSPQESDVQPVQPEEVSARD--FLQRLDLQI 96
PE+ ++S EE PV +++PP + +++D P Q +V + L + D I
Sbjct: 283 PEDNPVEDSQVIVEEVSIFPVEEQQEVPPETNRKTD-DPEQKAKVKKKKPKLLNKFDKTI 341
Query: 97 KLSTQAAKKLKEESRDEES 115
K AA+KL++ + EE+
Sbjct: 342 KAELDAAEKLRKRGKIEEA 360
>gi|124248554 melanoma antigen family A, 9 -like [Homo sapiens]
Length = 315
Score = 31.6 bits (70), Expect = 0.16
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 44 ENETADNSFSQEEEPVVAGEDLPPPSPQ 71
E ET +S S+EEE AG PP SPQ
Sbjct: 35 EEETTSSSDSKEEEVSAAGSSSPPQSPQ 62
>gi|4885473 melanoma antigen family A, 9 [Homo sapiens]
Length = 315
Score = 31.6 bits (70), Expect = 0.16
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 44 ENETADNSFSQEEEPVVAGEDLPPPSPQ 71
E ET +S S+EEE AG PP SPQ
Sbjct: 35 EEETTSSSDSKEEEVSAAGSSSPPQSPQ 62
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 31.2 bits (69), Expect = 0.21
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 37 LNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDF 88
L+ I++ E E+ DN+ +P + PS QES +P + E DF
Sbjct: 1300 LHRIETDEEESCDNAHGDANQPARDSQPRVLPSEQESTKKPYRIESDEEEDF 1351
>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
sapiens]
Length = 525
Score = 31.2 bits (69), Expect = 0.21
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 41 DSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSA-RDFLQRLDLQIKLS 99
+ E E A+ +EE+ V GE P SP E D P E+ A D Q + + +
Sbjct: 319 EEEEEEEAEEE-EEEEDSEVQGEQPKPASPAEEDKMPPYDEQTQAFIDAAQEARNKFEEA 377
Query: 100 TQAAKKLKEESRDEE 114
++ K ++E R+ E
Sbjct: 378 ERSLKDMEESIRNLE 392
>gi|53829385 leucine rich repeat containing 37B [Homo sapiens]
Length = 947
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 23 NIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSP--QESDVQPVQP 80
N+P + KP + P+NET +++ +Q+E P+ E+ P S + +D P P
Sbjct: 337 NLPKFTVKPADVE-VTMTSEPKNET-ESTQAQQEAPIQPPEEAEPSSTALRTTDPPPEHP 394
Query: 81 EEVS-------------ARDFLQRLDLQIKLSTQAAKKLKEESRDEES 115
E +Q LDL++ ++T+ ++K EE+
Sbjct: 395 EVTLPPSDKGQAQHSHLTEATVQPLDLELSITTEPTTEVKPSPTTEET 442
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 30.8 bits (68), Expect = 0.28
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 18 LKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQP 77
LKK P+ E+ L F GL + P +EE P G++L P PQE
Sbjct: 315 LKKGPKEPIPEEQELDFQGLEEEEEPSEGL------EEEGPEAGGKELTPLPPQEEKSSS 368
Query: 78 VQP 80
P
Sbjct: 369 PSP 371
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 30.8 bits (68), Expect = 0.28
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 29 EKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGE-----DLPPPSPQESDVQPVQPEEV 83
+KP+L + + + + + + E+ VV E DLPPP P P+QP+ V
Sbjct: 1017 KKPVLRDMKEEREQRKEKEGEKAEKVTEKVVVKPEKTEKKDLPPPPPPPQPPAPIQPQSV 1076
Query: 84 SARDFLQRLDLQIKLSTQAAKKLKEESRDEESP 116
+ + + ST+ A ++ S+D E P
Sbjct: 1077 PPP---IQPEAEKFPSTETATLAQKPSQDTEKP 1106
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 41 DSPENETADNSFSQEEEPVVAGEDLPPP-------SPQESDVQPVQPEEVSA-RDFLQRL 92
+ E E + ++EEE E+ PPP SP E D P E+ A D Q
Sbjct: 314 EEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYDEQTQAFIDAAQEA 373
Query: 93 DLQIKLSTQAAKKLKEESRDEE 114
+ + + ++ K ++E R+ E
Sbjct: 374 RNKFEEAERSLKDMEESIRNLE 395
Score = 26.6 bits (57), Expect = 5.2
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 29 EKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDF 88
E+P + + + E E + +EEE + E PP SP QP P E D
Sbjct: 303 EQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPP----QPASPAE---EDK 355
Query: 89 LQRLDLQIKLSTQAAKKLKEESRDEE 114
+ D Q + AA++ + + + E
Sbjct: 356 MPPYDEQTQAFIDAAQEARNKFEEAE 381
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 58 PVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKL 98
PV+ G+D P P P +P P + + + LDL + L
Sbjct: 252 PVLLGKDNPSPGPSRDSQKPTSPLQSAGDHLEEELDLLLNL 292
>gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog C
[Homo sapiens]
Length = 766
Score = 30.0 bits (66), Expect = 0.47
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 31 PLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQ 90
P +F S D+ E T ++ E+ P +A ++ S E++ +PV EE+ R+F +
Sbjct: 372 PWMFRSCTS-DTKEAATQEDP---EQVPELAAHEV---SASEAEERPVAEEEILLREFEE 424
Query: 91 RLDL--QIKLSTQAAKKLKEESRDEES 115
R L + +L+ A +E++D S
Sbjct: 425 RQSLRKRSELNQDAEPASSQETKDSSS 451
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 30.0 bits (66), Expect = 0.47
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 37 LNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQI 96
+N DS ++ T + ++EE G + S ES+V + EE S D + + +
Sbjct: 1014 VNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEE 1073
Query: 97 KLSTQAAKKLKEESRDEES 115
+ + KE DEE+
Sbjct: 1074 ENTDYLTDSNKENETDEEN 1092
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 80 PEEVSARDFLQRLDLQIKLSTQAAKKLK---EESRDEES 115
P+ +F RLD +K +T KKLK E+ RD S
Sbjct: 152 PDSRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLS 190
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 30.0 bits (66), Expect = 0.47
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 37 LNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQI 96
+N DS ++ T + ++EE G + S ES+V + EE S D + + +
Sbjct: 1014 VNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEE 1073
Query: 97 KLSTQAAKKLKEESRDEES 115
+ + KE DEE+
Sbjct: 1074 ENTDYLTDSNKENETDEEN 1092
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 80 PEEVSARDFLQRLDLQIKLSTQAAKKLK---EESRDEES 115
P+ +F RLD +K +T KKLK E+ RD S
Sbjct: 152 PDSRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLS 190
>gi|29788987 solute carrier family 24 member 4 isoform 3 [Homo
sapiens]
Length = 558
Score = 30.0 bits (66), Expect = 0.47
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 26 VISEKPLLFNGLNSIDSP-------EN-ETADNSFSQEEEPVVAGEDLPPPSPQESDVQP 77
+I+E+ L N N + S EN E + E+P E PPP P + +P
Sbjct: 283 IINERQRLINSANGVSSKPLQNGRHENIENGNVPVENPEDPQQNQEQQPPPQPPPPEPEP 342
Query: 78 VQPEEVS 84
V+ + +S
Sbjct: 343 VEADFLS 349
>gi|29788985 solute carrier family 24 member 4 isoform 2 precursor
[Homo sapiens]
Length = 586
Score = 30.0 bits (66), Expect = 0.47
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 26 VISEKPLLFNGLNSIDSP-------EN-ETADNSFSQEEEPVVAGEDLPPPSPQESDVQP 77
+I+E+ L N N + S EN E + E+P E PPP P + +P
Sbjct: 311 IINERQRLINSANGVSSKPLQNGRHENIENGNVPVENPEDPQQNQEQQPPPQPPPPEPEP 370
Query: 78 VQPEEVS 84
V+ + +S
Sbjct: 371 VEADFLS 377
>gi|24111228 solute carrier family 24 member 4 isoform 1 precursor
[Homo sapiens]
Length = 605
Score = 30.0 bits (66), Expect = 0.47
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 26 VISEKPLLFNGLNSIDSP-------EN-ETADNSFSQEEEPVVAGEDLPPPSPQESDVQP 77
+I+E+ L N N + S EN E + E+P E PPP P + +P
Sbjct: 330 IINERQRLINSANGVSSKPLQNGRHENIENGNVPVENPEDPQQNQEQQPPPQPPPPEPEP 389
Query: 78 VQPEEVS 84
V+ + +S
Sbjct: 390 VEADFLS 396
>gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 0.47
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 37 LNSIDSPENETADNSFSQEEEPVVAG-EDLPPPSPQESDVQPVQPEEVS--ARDFLQRL 92
++ + + E E A +QEE + AG + P PSP+ S V P+EV+ R ++QRL
Sbjct: 375 MSDLQAAEKE-AWRLLAQEEAAMDAGAQQNPQPSPEGSSVDKPTPQEVAFQLRSYVQRL 432
>gi|48762947 variable charge, X-linked 3A [Homo sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 53 SQEEEPVVAGEDLPPPSPQESDV-QPVQPEEVSARDFLQRLDLQIKLS--TQAAKKLKEE 109
S+ EEP+ + P QES+V +P+ E Q +++ LS +Q + L +E
Sbjct: 118 SEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQE 177
Query: 110 SRDEESP 116
S EE P
Sbjct: 178 SEMEELP 184
Score = 26.2 bits (56), Expect = 6.9
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 41 DSPENE-TADNSFSQE---EEPVVAGEDLPPPSPQESDV-QPVQPEEVSARDFLQRLDLQ 95
+ P +E T + SQE EEP+ ++ P QES V +P+ E Q ++
Sbjct: 92 EEPVSEGTQHDPLSQESELEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVE 151
Query: 96 IKLS--TQAAKKLKEESRDEE 114
LS ++ + L +ES+ EE
Sbjct: 152 EPLSQESEVEEPLSQESQVEE 172
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 29.3 bits (64), Expect = 0.81
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 26 VISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSA 85
V S+KP FN SP+ S ++ V + +PPPSP+ S + P + A
Sbjct: 1185 VNSQKPCFFNSYYIGKSPKK------ISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLA 1238
Query: 86 RDF 88
F
Sbjct: 1239 NYF 1241
Score = 28.5 bits (62), Expect = 1.4
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 19/113 (16%)
Query: 19 KKTLNIPVISEKPLLFNGLNSIDSPENETA-----DNSFSQEEEPVVA------GEDLPP 67
KKT IP I K F NS+ PENE N QEEE +A E + P
Sbjct: 334 KKTGKIPRIFLKQKQFEMENSLSDPENEQTVQKRKSNVVIQEEELELAVLEAGSSEAVKP 393
Query: 68 PSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEE-----SRDEES 115
E Q ++ A D L+ +K S+ K L E+ RD+ S
Sbjct: 394 KCTLEERQQFMKAFRQPASDALKN---GVKKSSDKQKDLNEKCLYEVGRDDNS 443
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 29.3 bits (64), Expect = 0.81
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 38 NSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEE 82
+S +SPE ET + +EEE E+ ++ +++ +PEE
Sbjct: 1256 DSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEE 1300
Score = 25.8 bits (55), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 39 SIDSPENETADNSFS-QEEEPVVAGEDLPPPSPQESDVQPVQPE 81
SI SP++ + S Q+++P PPP PQ+ P QP+
Sbjct: 1631 SIKSPQSCVVERPPSNQQQQP-------PPPPPQQPQPPPPQPQ 1667
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 29.3 bits (64), Expect = 0.81
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 38 NSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEE 82
+S +SPE ET + +EEE E+ ++ +++ +PEE
Sbjct: 1256 DSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEE 1300
Score = 25.8 bits (55), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 39 SIDSPENETADNSFS-QEEEPVVAGEDLPPPSPQESDVQPVQPE 81
SI SP++ + S Q+++P PPP PQ+ P QP+
Sbjct: 1631 SIKSPQSCVVERPPSNQQQQP-------PPPPPQQPQPPPPQPQ 1667
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 29.3 bits (64), Expect = 0.81
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 38 NSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEE 82
+S +SPE ET + +EEE E+ ++ +++ +PEE
Sbjct: 1256 DSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEE 1300
Score = 25.8 bits (55), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 39 SIDSPENETADNSFS-QEEEPVVAGEDLPPPSPQESDVQPVQPE 81
SI SP++ + S Q+++P PPP PQ+ P QP+
Sbjct: 1631 SIKSPQSCVVERPPSNQQQQP-------PPPPPQQPQPPPPQPQ 1667
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,096,094
Number of Sequences: 37866
Number of extensions: 248808
Number of successful extensions: 1522
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 237
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.