Guide to the Human Genome
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Search of human proteins with 115299745

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115299745 SCF apoptosis response protein 1 isoform a [Homo
sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115299762 SCF apoptosis response protein 1 isoform a [Homo sa...   327   2e-90
gi|115299750 SCF apoptosis response protein 1 isoform a [Homo sa...   327   2e-90
gi|115299745 SCF apoptosis response protein 1 isoform a [Homo sa...   327   2e-90
gi|115299756 SCF apoptosis response protein 1 isoform b [Homo sa...   195   2e-50
gi|115299754 SCF apoptosis response protein 1 isoform b [Homo sa...   195   2e-50
gi|115299760 SCF apoptosis response protein 1 isoform b [Homo sa...   195   2e-50
gi|34304370 dystrobrevin binding protein 1 isoform c [Homo sapiens]   103   8e-23
gi|19549327 dystrobrevin binding protein 1 isoform a [Homo sapiens]   103   8e-23
gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]    80   1e-15
gi|110815838 dysbindin (dystrobrevin binding protein 1) domain c...    42   3e-04
gi|110815842 dysbindin (dystrobrevin binding protein 1) domain c...    42   3e-04
gi|91208420 bassoon protein [Homo sapiens]                             38   0.004
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo...    37   0.007
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    37   0.010
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    37   0.010
gi|210032580 SET domain containing 1B [Homo sapiens]                   36   0.013
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ...    36   0.016
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]                     36   0.016
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         35   0.036
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]           35   0.036
gi|163965366 nascent polypeptide-associated complex alpha subuni...    35   0.036
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ...    34   0.048
gi|16445033 ACRC protein [Homo sapiens]                                34   0.048
gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens]      34   0.048
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F...    34   0.062
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               33   0.081
gi|83367077 mucin 16 [Homo sapiens]                                    33   0.11 
gi|55741677 SET domain containing 1A [Homo sapiens]                    33   0.11 
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi...    33   0.14 
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    33   0.14 

>gi|115299762 SCF apoptosis response protein 1 isoform a [Homo
           sapiens]
          Length = 161

 Score =  327 bits (839), Expect = 2e-90
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS 120
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS 120

Query: 121 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161
           SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
Sbjct: 121 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161


>gi|115299750 SCF apoptosis response protein 1 isoform a [Homo
           sapiens]
          Length = 161

 Score =  327 bits (839), Expect = 2e-90
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS 120
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS 120

Query: 121 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161
           SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
Sbjct: 121 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161


>gi|115299745 SCF apoptosis response protein 1 isoform a [Homo
           sapiens]
          Length = 161

 Score =  327 bits (839), Expect = 2e-90
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS 120
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS 120

Query: 121 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161
           SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
Sbjct: 121 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161


>gi|115299756 SCF apoptosis response protein 1 isoform b [Homo
           sapiens]
          Length = 112

 Score =  195 bits (495), Expect = 2e-50
 Identities = 97/109 (88%), Positives = 98/109 (89%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSD 109
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGM     + S   P  D
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPD 109


>gi|115299754 SCF apoptosis response protein 1 isoform b [Homo
           sapiens]
          Length = 112

 Score =  195 bits (495), Expect = 2e-50
 Identities = 97/109 (88%), Positives = 98/109 (89%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSD 109
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGM     + S   P  D
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPD 109


>gi|115299760 SCF apoptosis response protein 1 isoform b [Homo
           sapiens]
          Length = 112

 Score =  195 bits (495), Expect = 2e-50
 Identities = 97/109 (88%), Positives = 98/109 (89%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSD 109
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGM     + S   P  D
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPD 109


>gi|34304370 dystrobrevin binding protein 1 isoform c [Homo sapiens]
          Length = 270

 Score =  103 bits (256), Expect = 8e-23
 Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 13/148 (8%)

Query: 12  QQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLG 71
           QQ++L+ERQKFFE+  Q + E      +L +  +R PIGS+SSMEVNVD LEQ++L+D+ 
Sbjct: 107 QQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDIS 166

Query: 72  DPDAADVFL-------PCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSS 124
           D +A DVFL           P   P+SS   N +  L +P P+  R    +SSS+ +DS+
Sbjct: 167 DQEALDVFLNSGGEENTVLSPALGPESSTCQNEI-TLQVPNPSELRAKPPSSSSTCTDSA 225

Query: 125 TNLHSPNPSDDGADTPLAQSDEEEERGD 152
           T         +G ++P+ QSDEEE + D
Sbjct: 226 T-----RDISEGGESPVVQSDEEEVQVD 248


>gi|19549327 dystrobrevin binding protein 1 isoform a [Homo sapiens]
          Length = 351

 Score =  103 bits (256), Expect = 8e-23
 Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 13/148 (8%)

Query: 12  QQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLG 71
           QQ++L+ERQKFFE+  Q + E      +L +  +R PIGS+SSMEVNVD LEQ++L+D+ 
Sbjct: 188 QQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDIS 247

Query: 72  DPDAADVFL-------PCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSS 124
           D +A DVFL           P   P+SS   N +  L +P P+  R    +SSS+ +DS+
Sbjct: 248 DQEALDVFLNSGGEENTVLSPALGPESSTCQNEI-TLQVPNPSELRAKPPSSSSTCTDSA 306

Query: 125 TNLHSPNPSDDGADTPLAQSDEEEERGD 152
           T         +G ++P+ QSDEEE + D
Sbjct: 307 T-----RDISEGGESPVVQSDEEEVQVD 329


>gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]
          Length = 303

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 12  QQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLG 71
           QQ++L+ERQKFFE+  Q + E      +L +  +R PIGS+SSMEVNVD LEQ++L+D+ 
Sbjct: 188 QQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDIS 247

Query: 72  DPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTS 113
           D +A DVFL       T  S  +   +++L+L  P   R  S
Sbjct: 248 DQEALDVFLNSGGEENTVLSPAL-GRVDKLALAEPGQYRCHS 288


>gi|110815838 dysbindin (dystrobrevin binding protein 1) domain
          containing 1 isoform 1 [Homo sapiens]
          Length = 158

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 40 LHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCED 84
          L +  +R P+ S+SS+EV+ D L+  EL D+ D + A+VF   +D
Sbjct: 53 LQVTERRQPLSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDD 97


>gi|110815842 dysbindin (dystrobrevin binding protein 1) domain
           containing 1 isoform 2 [Homo sapiens]
          Length = 178

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 40  LHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCED 84
           L +  +R P+ S+SS+EV+ D L+  EL D+ D + A+VF   +D
Sbjct: 73  LQVTERRQPLSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDD 117


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 116 SSSSSSDSSTNLHSP--NPSDDGADTPLAQSDEEEERGDGGAEPGA 159
           +++  S S   LHSP  +P+   A  PL + D+E  RG GG +PG+
Sbjct: 231 TTAPRSKSQQQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGS 276


>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
           [Homo sapiens]
          Length = 666

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 63  EQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSD 122
           +Q E  D G P   ++F    +       SG DNH          S+R+ +R+ +S  SD
Sbjct: 46  DQDERGDSGQPSNKELFGDDSEDEGASHHSGSDNH----------SERSDNRSEASERSD 95

Query: 123 SSTNLHSPNPSDDGADTPLAQSDEEEE--RGDGGA 155
              N  S      G++ P   +D+E+E  R DGG+
Sbjct: 96  HEDNDPSDVDQHSGSEAP---NDDEDEGHRSDGGS 127


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 36.6 bits (83), Expect = 0.010
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 81  PCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTP 140
           P    PP P       HL  L LP P +   T+   S+ SS       +P PS DG+  P
Sbjct: 279 PAAGGPPQPGP-----HLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADGSAAP 333

Query: 141 LAQSDEEEERGDGGAEPGAC 160
                     G GG  P AC
Sbjct: 334 AGVGVPPPATG-GGDGPFAC 352



 Score = 32.3 bits (72), Expect = 0.18
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 57  VNVDTLEQVELIDLGDPDAADVFLPCE-----DPPPTPQSSGMDNHLEELSLP---VPTS 108
           +N    E +EL   G+   A   LPC       PPP P     D   +    P   VP+S
Sbjct: 37  LNHQRFEPMELY--GEHAKAVAALPCAPGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSS 94

Query: 109 DRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPL 141
             ++S +SSSSSS SS++  S +      D PL
Sbjct: 95  SSSSS-SSSSSSSSSSSSSSSSSSQAKKPDPPL 126


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 36.6 bits (83), Expect = 0.010
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 81  PCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTP 140
           P    PP P       HL  L LP P +   T+   S+ SS       +P PS DG+  P
Sbjct: 279 PAAGGPPQPGP-----HLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADGSAAP 333

Query: 141 LAQSDEEEERGDGGAEPGAC 160
                     G GG  P AC
Sbjct: 334 AGVGVPPPATG-GGDGPFAC 352



 Score = 32.3 bits (72), Expect = 0.18
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 57  VNVDTLEQVELIDLGDPDAADVFLPCE-----DPPPTPQSSGMDNHLEELSLP---VPTS 108
           +N    E +EL   G+   A   LPC       PPP P     D   +    P   VP+S
Sbjct: 37  LNHQRFEPMELY--GEHAKAVAALPCAPGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSS 94

Query: 109 DRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPL 141
             ++S +SSSSSS SS++  S +      D PL
Sbjct: 95  SSSSS-SSSSSSSSSSSSSSSSSSQAKKPDPPL 126


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 54   SMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSS------GMDNHLEELSLPVPT 107
            S E   +  E+ E  D  D D+ D      D   T  S       G  +  E +S+    
Sbjct: 1047 STEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKDEGDSDEEETVSIVTSK 1106

Query: 108  SDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS 161
            ++ T+S  SS SS   S++  SP+ S+D  +    + +EEEE  +  AE    S
Sbjct: 1107 AEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEEEEEEMVAEESMAS 1160



 Score = 29.3 bits (64), Expect = 1.5
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 63  EQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSR-TSSSSSS 121
           ++ +L+ L +PD+ D  L  E  P +  SS     L  L+ P  T+ +   R  +  SS 
Sbjct: 510 QRTKLLFLREPDS-DTELQMEGSPISSSSS----QLSPLA-PFGTNSQPGFRGPTPPSSR 563

Query: 122 DSSTNLHSPNPSDDGADTPLAQSDEEEE 149
            SST L   +P      TPL  SDE+EE
Sbjct: 564 PSSTGLEDISP------TPLPDSDEDEE 585


>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
            sapiens]
          Length = 2542

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 47   PPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVP 106
            PP   ISS+     +L  V    +    A   FLP      T Q+      +E  S   P
Sbjct: 1971 PPATVISSVTSTCSSLPSVSSAPITSGQAPTTFLPAS----TSQAQLSSQKMESFSAVPP 2026

Query: 107  TSDR------------TTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEE 148
            T ++            T S T++S SS +S    +P      + TP + + +EE
Sbjct: 2027 TKEKVSTQDQPMANLCTPSSTANSCSSSASNTPGAPETHPSSSPTPTSSNTQEE 2080


>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
          Length = 2617

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 47   PPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVP 106
            PP   ISS+     +L  V    +    A   FLP      T Q+      +E  S   P
Sbjct: 1971 PPATVISSVTSTCSSLPSVSSAPITSGQAPTTFLPAS----TSQAQLSSQKMESFSAVPP 2026

Query: 107  TSDR------------TTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEE 148
            T ++            T S T++S SS +S    +P      + TP + + +EE
Sbjct: 2027 TKEKVSTQDQPMANLCTPSSTANSCSSSASNTPGAPETHPSSSPTPTSSNTQEE 2080


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 71  GDPDAADVFLPCEDPPPT--PQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLH 128
           G+        P + PPP   P +      LEE+S    T      R    S++D +  + 
Sbjct: 885 GEEPVPGPMTPTQPPPPLSLPPARSESEVLEEISRACETLVERVGR----SATDPADPVD 940

Query: 129 SPNPSDDGADTPLAQSDEEEERGDGGAEPGAC 160
           +  P+D G +  L  +  +EE G   A  G+C
Sbjct: 941 TAEPADSGTERLLPPAQAKEEAGGVAAVSGSC 972



 Score = 28.1 bits (61), Expect = 3.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 111 TTSRTSSSSSSDSSTNLHSPNPSDDGAD 138
           TT+ +SSSSSS++      PNP   GAD
Sbjct: 396 TTTSSSSSSSSNTGLRGVEPNPGIPGAD 423


>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
          Length = 1194

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 91  SSGMDN---HLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEE 147
           SSG+D+   +    SLP   +  T +  S  SS  S+  L  P+P+ +G D       EE
Sbjct: 640 SSGLDSLGRYRSSCSLPPSLTTSTLASPSPPSSGHSTPRLAPPSPAREGTDKANHVPKEE 699

Query: 148 --EERGDGGAEPG 158
               RG+G A PG
Sbjct: 700 AGAPRGEGPAIPG 712



 Score = 30.0 bits (66), Expect = 0.90
 Identities = 18/77 (23%), Positives = 31/77 (40%)

Query: 47  PPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVP 106
           P +   S      D    V   + G P      +P + PPPTP+S+ ++   + L+L   
Sbjct: 677 PRLAPPSPAREGTDKANHVPKEEAGAPRGEGPAIPGDTPPPTPRSARLERMTQALALQAG 736

Query: 107 TSDRTTSRTSSSSSSDS 123
           + +       S  + DS
Sbjct: 737 SLEDGGPPRGSEGTPDS 753


>gi|163965366 nascent polypeptide-associated complex alpha subunit
           isoform a [Homo sapiens]
          Length = 2078

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 67  LIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSS---SSDS 123
           L D   P    V    + PP    S+G D  +  LS PV   + +    +S S   S DS
Sbjct: 790 LADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDS 849

Query: 124 STNLHSPN-PSDDGADTPLA 142
               HSP  PS  GA TP A
Sbjct: 850 PATTHSPTPPSPKGAPTPSA 869



 Score = 26.6 bits (57), Expect = 9.9
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 27   LQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDP- 85
            L P+ +F+     L LES   P+             ++ EL+ L  P+     +P +   
Sbjct: 1810 LPPKQQFLPSSPGLVLESPSKPLAPA----------DEDELLPLIPPEPISGGVPFQSVL 1859

Query: 86   --PPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQ 143
               PTP+S+G       + +P P++ +  ++ +  S ++S ++   P   +  +     Q
Sbjct: 1860 VNMPTPKSAG-------IPVPTPSAKQPVTKNNKGSGTESDSDESVPELEEQDSTQATTQ 1912

Query: 144  SDEEEERGDGGAEP 157
              +     +   EP
Sbjct: 1913 QAQLAAAAEIDEEP 1926


>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
           homolog 2 [Homo sapiens]
          Length = 1210

 Score = 34.3 bits (77), Expect = 0.048
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 38  SHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNH 97
           S  H  SQ+   G+ S +E      + ++L D  D D+       + P   P SS   + 
Sbjct: 409 SKTHSNSQQ---GTSSMLE------DDLQLSDSEDSDSE------QTPEKPPSSSAPPSA 453

Query: 98  LEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADT-PLAQSDEEEE 149
            + L  PV ++  +++ + S+S SDSS++  S + S D  +  PL     E E
Sbjct: 454 PQSLPEPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEPE 506



 Score = 27.3 bits (59), Expect = 5.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 83  EDPPPTPQSSGMDNHLEELSLPV--PTSDRTTS----RTSSSSSSDSSTNLHSPNPSD 134
           E  PPT     +DN L ++S P   P   R+T        S  SSDS+T+       D
Sbjct: 504 EPEPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRHPESKGSSDSATSQEHSESKD 561


>gi|16445033 ACRC protein [Homo sapiens]
          Length = 691

 Score = 34.3 bits (77), Expect = 0.048
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 39  HLHLESQRPPI---------GSISSMEVNVDTLEQVELID--LGDPDAADVFLPCEDPPP 87
           H+    Q PPI          + + +EV  D  +  E  D    D +A D      + P 
Sbjct: 111 HVKPAIQEPPIVISDDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPD 170

Query: 88  --TPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSD 145
             +  S   D++ ++  +P   SD ++   S  SS D+S +   P+   D +D P   SD
Sbjct: 171 DNSDDSEAPDDNSDDSDVPDDNSDDSSDDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSD 230

Query: 146 EEEERGDGGAEPGA 159
           + +   D   +  A
Sbjct: 231 DSDVPDDSSDDSEA 244



 Score = 31.2 bits (69), Expect = 0.40
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 69  DLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSS----DSS 124
           D  D ++ D  +P +    +  S   D+  ++  +P  +SD + +   SS  S    DSS
Sbjct: 203 DSSDDNSDDSDVPDDK---SDDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDDSS 259

Query: 125 TNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGA 159
            +  +P+ S D ++ P   SD+ E   D   +  A
Sbjct: 260 DDSEAPDDSSDDSEAPDDSSDDSEASDDSSDDSEA 294



 Score = 30.0 bits (66), Expect = 0.90
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 91  SSGMDNHLEELSLPVPTSDRTTSRTSSS----SSSDSSTNLHSPNPSDDGADTPLAQSDE 146
           S   D+  ++   P  +SD + +   SS    +S DSS +  +P+   D +D P  +SD+
Sbjct: 262 SEAPDDSSDDSEAPDDSSDDSEASDDSSDDSEASDDSSDDSEAPDDKSDDSDVPEDKSDD 321

Query: 147 EEERGD 152
            +   D
Sbjct: 322 SDVPDD 327


>gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens]
          Length = 545

 Score = 34.3 bits (77), Expect = 0.048
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 6/153 (3%)

Query: 10  ERQQLRLRERQKFFEDILQPETEFVFPLSHLH-LESQRPPIGSISSMEVNV-DTLEQVEL 67
           E+Q+ RL+++ +     LQ E +    L  +  +  + P +G  +S+E  + +TL  +E 
Sbjct: 341 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIER 400

Query: 68  IDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNL 127
           + L            E    + +   +  H      P P +      +S+S+S D+  + 
Sbjct: 401 LKLEVQKYEAWLAEAESRVLSNRGDSLSRHARP---PDPPASAPPDSSSNSASQDTKESS 457

Query: 128 HSPNPSDDGADTPLAQSDEEEERGDGGAEPGAC 160
             P PS++  DTP+    +E+   +  +  G C
Sbjct: 458 EEP-PSEESQDTPIYTEFDEDFEEEPTSPIGHC 489


>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
           subunit [Homo sapiens]
          Length = 1977

 Score = 33.9 bits (76), Expect = 0.062
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 59  VDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRT--- 115
           +D + Q E +D+ DP A       +D   +    G   H  +L+     ++R   R    
Sbjct: 405 LDWITQAEELDMEDPSA-------DDNLGSMAEEGRAGHRPQLA---ELTNRRRGRLRWF 454

Query: 116 SSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERG 151
           S S+ S  ST+ H+  P+ D       Q DE+EE G
Sbjct: 455 SHSTRSTHSTSSHASLPASDTGSMTETQGDEDEEEG 490


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 33.5 bits (75), Expect = 0.081
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 3   PNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTL 62
           P P AA   Q++   +  K         +  + P+   H   +  P     S    + T 
Sbjct: 348 PRPAAAQPSQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSA---LPTQ 404

Query: 63  EQVELIDLGDPDAADVFLPCEDP---------PPTPQSSGMDNHLEELSLPVPTSDRTTS 113
           +QV       P  A V  P E P         PP P +  +         P+PT  RT +
Sbjct: 405 KQVP--PTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEA 462

Query: 114 RTSSSSSSDSS--TNLHSPNP----SDDGADTP 140
           + +S +S  +S  T+ H P P    S   A TP
Sbjct: 463 KITSHASKPASARTSTHKPPPFTALSSSPAPTP 495


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 27   LQPETEFVFPLSHLHLESQRPP-IGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDP 85
            LQ     + P S L++  + PP + S  ++     T  + + +     +     LP   P
Sbjct: 3071 LQTSALTLSPTSTLNMSQEEPPELTSSQTIAEEEGTTAETQTLTFTPSETPTSLLPVSSP 3130

Query: 86   --PPTPQSSGMDNHLEELSLP-----VPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGAD 138
              P   + S  +     +S+P     V T+D T   T   SS  +  N   P P+++   
Sbjct: 3131 TEPTARRKSSPETWASSISVPAKTSLVETTDGTLVTTIKMSSQAAQGNSTWPAPAEETGS 3190

Query: 139  TPLAQSDEEEE 149
            +P   S    E
Sbjct: 3191 SPAGTSPGSPE 3201



 Score = 26.6 bits (57), Expect = 9.9
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 98   LEELSLP------VPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLA 142
            L+ +S P      + TS  T S  +S+  +++ST+  + +PSD  A TP++
Sbjct: 3625 LDSMSTPHGRITVIGTSLVTPSSDASAVKTETSTSERTLSPSDTTASTPIS 3675


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 108  SDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEE 149
            +D T+   SSSSSS SS++  S + S   + +  +  DEEEE
Sbjct: 1027 NDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEE 1068



 Score = 32.0 bits (71), Expect = 0.24
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 111  TTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGA 159
            +TS + SSSSS SS++  S + S   + +  + S++EEE     A P A
Sbjct: 1029 STSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSA 1077



 Score = 28.5 bits (62), Expect = 2.6
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 107  TSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER 150
            TSD  +S +SSSSSS SS++  S + S   +    ++ +EEEER
Sbjct: 1030 TSDSESS-SSSSSSSSSSSS--SSSSSSSSSSESSSEDEEEEER 1070



 Score = 27.3 bits (59), Expect = 5.8
 Identities = 22/93 (23%), Positives = 38/93 (40%)

Query: 56   EVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRT 115
            E  VDT ++   +  G+ + +D    C     +   +   +  E  S    +S  ++S +
Sbjct: 991  EEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSS 1050

Query: 116  SSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEE 148
            SSSSSS S ++       +  A  P A     E
Sbjct: 1051 SSSSSSSSESSSEDEEEEERPAALPSASPPPRE 1083



 Score = 26.6 bits (57), Expect = 9.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 88   TPQSSGMDNHLE---ELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQS 144
            T  S G D   +   + SL   +     S + S SSS SS++  S + S   + +  ++S
Sbjct: 1001 TEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSES 1060

Query: 145  DEEEE 149
              E+E
Sbjct: 1061 SSEDE 1065


>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
           sapiens]
          Length = 1341

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 107 TSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEP 157
           ++D ++SR+SSSSSS S +   SP+ S   + +PL     +  +    A P
Sbjct: 573 SADSSSSRSSSSSSSSSRSRSRSPDSSGSRSHSPLRSKQRDVAQARTHANP 623


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
           sapiens]
          Length = 1751

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 103 LPV-PTSDRTTSRTSSSSSSDSSTNLHSPNPS----DDGADTPL-AQSDEEEERGDGG 154
           LPV PT+D TT  T  + S++ +T   SP P     +DG DTP  A+S +  E    G
Sbjct: 52  LPVQPTADTTTHVTPRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEENIAG 109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,212,572
Number of Sequences: 37866
Number of extensions: 418863
Number of successful extensions: 3810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 2719
Number of HSP's gapped (non-prelim): 962
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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