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Search of human proteins with 115292438
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115292438 cementum protein 1 [Homo sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115292438 cementum protein 1 [Homo sapiens] 521 e-148
gi|16933557 dachsous 1 precursor [Homo sapiens] 39 0.004
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 36 0.035
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 36 0.035
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 36 0.035
gi|238859653 pleckstrin homology domain containing family A memb... 35 0.046
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 35 0.060
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 35 0.079
gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens] 35 0.079
gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens] 35 0.079
gi|61699226 pulmonary surfactant-associated protein D precursor ... 34 0.10
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 34 0.10
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 34 0.10
gi|238859651 pleckstrin homology domain containing family A memb... 34 0.13
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 33 0.18
gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [... 33 0.18
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 33 0.23
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 33 0.23
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 33 0.23
gi|58530845 zyxin [Homo sapiens] 33 0.23
gi|4508047 zyxin [Homo sapiens] 33 0.23
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 33 0.30
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 33 0.30
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 33 0.30
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 33 0.30
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 32 0.39
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 32 0.39
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 32 0.39
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 32 0.39
>gi|115292438 cementum protein 1 [Homo sapiens]
Length = 247
Score = 521 bits (1341), Expect = e-148
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV 60
MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV
Sbjct: 1 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV 60
Query: 61 KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS 120
KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS
Sbjct: 61 KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS 120
Query: 121 LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE 180
LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE
Sbjct: 121 LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE 180
Query: 181 KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED 240
KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED
Sbjct: 181 KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED 240
Query: 241 GRMTLMG 247
GRMTLMG
Sbjct: 241 GRMTLMG 247
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 38.9 bits (89), Expect = 0.004
Identities = 48/202 (23%), Positives = 69/202 (34%), Gaps = 36/202 (17%)
Query: 49 AGQPLPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQAR 108
AG LP A + E G PA T A G CGL P +
Sbjct: 3095 AGLLLPGAGATLYREEGPPATAT--------------AFLGGCGLSPAPTGDYGFPADGK 3140
Query: 109 PCPGRWFFPGCSLPTGGAQTILSLWTWRHFLNWALQQREENS---------GRARRVPPV 159
PC + G + + + W + L+W Q + S AR PP
Sbjct: 3141 PCVAG----ALTAIVAGEEELRGSYNWDYLLSWCPQFQPLASVFTEIARLKDEARPCPPA 3196
Query: 160 PR-------TAPVSKGEGSHPPQNSNGEKVKTITPDVGLHQSLTSDPTVAVLRAKRAPEA 212
PR TA G S PP+ +N + I P ++ + +++ A +P
Sbjct: 3197 PRIDPPPLITAVAHPGAKSVPPKPANTAAARAIFPPASHRSPISHEGSLS--SAAMSPSF 3254
Query: 213 HPPRSCSGSLTARVCHMGVCQG 234
P S + + V GV QG
Sbjct: 3255 SPSLSPLAARSPVVSPFGVAQG 3276
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 35.8 bits (81), Expect = 0.035
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 36 GKTAPLPGPAQAGAGQP---LPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACG 92
G TAP P A+ G+G+P + AA + P+P S +R RR A + G
Sbjct: 81 GVTAPAPPDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLR---RR----RARNSPG 133
Query: 93 LRSTPCALPQALPQARPC-PGRWFFPGCSLP 122
+R +P P P P GRW S P
Sbjct: 134 IRPSPSPSPSPSPSPSPARGGRWTTCASSSP 164
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 35.8 bits (81), Expect = 0.035
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 36 GKTAPLPGPAQAGAGQP---LPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACG 92
G TAP P A+ G+G+P + AA + P+P S +R RR A + G
Sbjct: 81 GVTAPAPPDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLR---RR----RARNSPG 133
Query: 93 LRSTPCALPQALPQARPC-PGRWFFPGCSLP 122
+R +P P P P GRW S P
Sbjct: 134 IRPSPSPSPSPSPSPSPARGGRWTTCASSSP 164
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 35.8 bits (81), Expect = 0.035
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 36 GKTAPLPGPAQAGAGQP---LPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACG 92
G TAP P A+ G+G+P + AA + P+P S +R RR A + G
Sbjct: 81 GVTAPAPPDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLR---RR----RARNSPG 133
Query: 93 LRSTPCALPQALPQARPC-PGRWFFPGCSLP 122
+R +P P P P GRW S P
Sbjct: 134 IRPSPSPSPSPSPSPSPARGGRWTTCASSSP 164
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 35.4 bits (80), Expect = 0.046
Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 32/195 (16%)
Query: 32 PGSPGKTAPLPGPAQAGAGQPLPKGCAAVKAE---------------VGIPAPHTSQEVR 76
P SP + P GP G + +G +E + P+P T
Sbjct: 162 PRSPARPQPGEGPGGPGGPPEVSRGEEGRISESPEVTRLSRGRGRPRLLTPSPTTDLHSG 221
Query: 77 IHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRW--FFPGCSLPTGGAQTILSLWT 134
+ +RR S P S P + P +LP+ R P R G + P T LS
Sbjct: 222 LQMRRARS---PDLFTPLSRPPS-PLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRID 277
Query: 135 WRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQN----SNGEKVKTITP-DV 189
R L+W Q++ + PP PR P S+ G PP++ S + + P +
Sbjct: 278 VRPPLDWGPQRQTLSR------PPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQPGPPLES 331
Query: 190 GLHQSLTSDPTVAVL 204
HQSL +D + L
Sbjct: 332 TFHQSLETDTLLTKL 346
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 35.0 bits (79), Expect = 0.060
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 16 CSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAPHTSQEV 75
CS S T+ L PG PG P + G+P PKG + E+G+P P
Sbjct: 1451 CSCSETNEVALGPAGPPGGPGLRGP-----KGQQGEPGPKGPDGPRGEIGLPGPQGPPGP 1505
Query: 76 RIHIRRLLSWAAPGACGLR----STPCALPQALPQARPCPGRWFFPG 118
+ L PG G + T PQ +P PGR PG
Sbjct: 1506 Q-GPSGLSIQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPG 1551
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 34.7 bits (78), Expect = 0.079
Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 150 SGRARRVPPVPRTAPVSKGEGSHPPQNSNGEKVKTITPDVGLHQ--SLTSDPTVAVLRA- 206
SG RR P R P S EGS PQ S+ +K PDVG Q L S +A R
Sbjct: 148 SGDRRRAGPEKR--PKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPF 205
Query: 207 ---KRAPEAHPPRSCSG 220
RA HP R G
Sbjct: 206 NTYPRADTDHPSRGAQG 222
>gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 34.7 bits (78), Expect = 0.079
Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 150 SGRARRVPPVPRTAPVSKGEGSHPPQNSNGEKVKTITPDVGLHQ--SLTSDPTVAVLRA- 206
SG RR P R P S EGS PQ S+ +K PDVG Q L S +A R
Sbjct: 148 SGDRRRAGPEKR--PKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPF 205
Query: 207 ---KRAPEAHPPRSCSG 220
RA HP R G
Sbjct: 206 NTYPRADTDHPSRGAQG 222
>gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 34.7 bits (78), Expect = 0.079
Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 150 SGRARRVPPVPRTAPVSKGEGSHPPQNSNGEKVKTITPDVGLHQ--SLTSDPTVAVLRA- 206
SG RR P R P S EGS PQ S+ +K PDVG Q L S +A R
Sbjct: 148 SGDRRRAGPEKR--PKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPF 205
Query: 207 ---KRAPEAHPPRSCSG 220
RA HP R G
Sbjct: 206 NTYPRADTDHPSRGAQG 222
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 34.3 bits (77), Expect = 0.10
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 31 LPGSPGKTAPLPGPAQAGA-GQPLPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPG 89
+PG G+ PL G G+P PKG A K EVG P S R PG
Sbjct: 113 VPGPAGREGPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPG 172
Query: 90 ACGLRSTPCAL-------PQALPQARPCPG 112
G+ A PQ P AR PG
Sbjct: 173 ERGVPGNTGAAGSAGAMGPQGSPGARGPPG 202
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 34.3 bits (77), Expect = 0.10
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 29 LSLPGSPGKTAPLPGPAQAGAGQPL-PKGCAAVKAEVGIPAP 69
L LPG PG P P G P+ P+G +K E G+P P
Sbjct: 450 LGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGP 491
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 31 LPGSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAPH 70
+PGSPG T P PGP G P P G E GI H
Sbjct: 511 VPGSPGITGP-PGP----PGPPGPPGAPGAFDETGIAGLH 545
Score = 27.7 bits (60), Expect = 9.6
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 31 LPGSPGKT-AP----LPGPAQAGAGQPLPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSW 85
LPG+PG+ AP LPGPA G G+P G + G P R
Sbjct: 215 LPGAPGQGGAPGPPGLPGPA--GLGKPGLDGLPGAPGDKGESGPPGVPGPR--------- 263
Query: 86 AAPGACGLRSTPCALPQALPQARPCPG 112
PGA G + P +P A PG
Sbjct: 264 GEPGAVGPKGPPGVDGVGVPGAAGLPG 290
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 34.3 bits (77), Expect = 0.10
Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 52/170 (30%)
Query: 33 GSPGKTAPL-----PG----PAQAG----AGQPLPKGCAAVKAEVGIPAPHTSQEVRIHI 79
GSPGKT P PG P + G +G+P PKG V+ E G P P
Sbjct: 430 GSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDA------ 483
Query: 80 RRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCSLPTGGAQTILSLWTWRHFL 139
APG G P P+ L R PG+ PG G T +H +
Sbjct: 484 ------GAPGVQGYPGPPG--PRGLAGNRGVPGQ---PGRQGVEGRDATD------QHIV 526
Query: 140 NWALQQREENSGR----ARRV------------PPVPRTAPVSKGEGSHP 173
+ AL+ +E A+R PP P P +G HP
Sbjct: 527 DVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGYPGKQGPHGHP 576
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 31 LPGSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAP 69
LPG PG LPGP AG P P G + E+GI P
Sbjct: 106 LPGPPG----LPGPGFAGP--PGPPGPVGLPGEIGIRGP 138
Score = 28.9 bits (63), Expect = 4.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 33 GSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAPHTSQEVR 76
G GK L P G +P PKG E GIP P Q +R
Sbjct: 193 GHAGKRGILGDPGHQG--KPGPKGDVGASGEQGIPGPPGPQGIR 234
Score = 28.1 bits (61), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 33 GSPGKTAPLPGPAQAGA-------GQPLPKGCAAVKAEVGIPAP 69
G PGK P + G G+P P G VK + G+P P
Sbjct: 66 GEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGP 109
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 33.9 bits (76), Expect = 0.13
Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 27/162 (16%)
Query: 32 PGSPGKTAPLPGPAQAGAGQPLPKGCAAVKAE---------------VGIPAPHTSQEVR 76
P SP + P GP G + +G +E + P+P T
Sbjct: 162 PRSPARPQPGEGPGGPGGPPEVSRGEEGRISESPEVTRLSRGRGRPRLLTPSPTTDLHSG 221
Query: 77 IHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRW--FFPGCSLPTGGAQTILSLWT 134
+ +RR S P S P + P +LP+ R P R G + P T LS
Sbjct: 222 LQMRRARS---PDLFTPLSRPPS-PLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRID 277
Query: 135 WRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQN 176
R L+W Q++ + PP PR P S+ G PP++
Sbjct: 278 VRPPLDWGPQRQTLSR------PPTPRRGPPSEAGGGKPPRS 313
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 33.5 bits (75), Expect = 0.18
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 14 RRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQ-----------------------AGAG 50
RRC +S S C S+PG+P + LP PA A
Sbjct: 143 RRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGEVNKVKYPSAARGPGRSTLGVGCEPAA 202
Query: 51 QPLPKGCAAVKAEVGIPAPHT---SQEVRIHIRRLLSW 85
P G A V + PHT + +++ + R SW
Sbjct: 203 SPAAGGWAGVTSSDSRAVPHTLLPQRPLQLFVARSCSW 240
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 33.5 bits (75), Expect = 0.18
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 14 RRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQ-----------------------AGAG 50
RRC +S S C S+PG+P + LP PA A
Sbjct: 143 RRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGEVNKVKYPSAARGPGRSTLGVGCEPAA 202
Query: 51 QPLPKGCAAVKAEVGIPAPHT---SQEVRIHIRRLLSW 85
P G A V + PHT + +++ + R SW
Sbjct: 203 SPAAGGWAGVTSSDSRAVPHTLLPQRPLQLFVARSCSW 240
>gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [Homo
sapiens]
Length = 1250
Score = 33.5 bits (75), Expect = 0.18
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 11 AGHRRCSTSNTSAENLTCLSLPGSPG--KTAPLPGPAQAGAGQ------PLPKGCAAVKA 62
AG RR S S L+ + PG+P A L P+ A + P P+ + +
Sbjct: 976 AGLRR-SPHRESLPGLSSTATPGNPALYSRARLGPPSPPAAHELESLVHPHPQDWSPPPS 1034
Query: 63 EVGIPAPHTS------QEVRIHIRRLLSWAAPGACGLRST--PCALPQALPQARPCPGRW 114
+V A S E R H +R +SWA P + C LPQA P RP R
Sbjct: 1035 DVEDRAEVHSLMGGGVSEGRSHSKRKISWAQPSGLSWAGSWAGCELPQAGP--RPALTRA 1092
Query: 115 FFPGCSLPTGGAQTIL 130
P P G QT+L
Sbjct: 1093 LLP----PAGTGQTLL 1104
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 33.1 bits (74), Expect = 0.23
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 1 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV 60
M +S + + AG R TS T + S G PGK +P G +Q G G A +
Sbjct: 1329 MHSSGSSGKGAGPLRGKTSGTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGL 1388
Query: 61 KAEVGIPAPHT 71
G AP T
Sbjct: 1389 GIRQGGKAPVT 1399
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 33.1 bits (74), Expect = 0.23
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 1 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV 60
M +S + + AG R TS T + S G PGK +P G +Q G G A +
Sbjct: 1329 MHSSGSSGKGAGPLRGKTSGTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGL 1388
Query: 61 KAEVGIPAPHT 71
G AP T
Sbjct: 1389 GIRQGGKAPVT 1399
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 33.1 bits (74), Expect = 0.23
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 1 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV 60
M +S + + AG R TS T + S G PGK +P G +Q G G A +
Sbjct: 1324 MHSSGSSGKGAGPLRGKTSGTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGL 1383
Query: 61 KAEVGIPAPHT 71
G AP T
Sbjct: 1384 GIRQGGKAPVT 1394
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 36 GKTAPLPGPAQAGAGQPLPKGCAAVKAEVGI---PAPHTSQEVRIHIRRLLSWAAPGACG 92
G TAPLP + QPLP+ A +++ P P +V++H++ +
Sbjct: 192 GGTAPLPPWKSPSSSQPLPQVPAPAQSQTQFHVQPQPQPKPQVQLHVQSQTQPVSLANTQ 251
Query: 93 LRSTPCALPQALPQARPCPGRWFFPGCSLPTGGA 126
R P + P P+ P + F P S + GA
Sbjct: 252 PRGPPASSPAPAPKFSPVTPK-FTPVASKFSPGA 284
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 36 GKTAPLPGPAQAGAGQPLPKGCAAVKAEVGI---PAPHTSQEVRIHIRRLLSWAAPGACG 92
G TAPLP + QPLP+ A +++ P P +V++H++ +
Sbjct: 192 GGTAPLPPWKSPSSSQPLPQVPAPAQSQTQFHVQPQPQPKPQVQLHVQSQTQPVSLANTQ 251
Query: 93 LRSTPCALPQALPQARPCPGRWFFPGCSLPTGGA 126
R P + P P+ P + F P S + GA
Sbjct: 252 PRGPPASSPAPAPKFSPVTPK-FTPVASKFSPGA 284
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 32.7 bits (73), Expect = 0.30
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 31 LPGSPGKTAP-----LPG----------PAQAGA-GQPLPKGCAAVKAEVGIPAPHTSQE 74
LPG+PG T P +PG P G G P G A +K + G PA E
Sbjct: 107 LPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIE 166
Query: 75 VRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCSLPTG 124
+ L APG GL P P + P PG + FPG P G
Sbjct: 167 LDAKGDPGLP-GAPGPQGLPGPP-GFPGPVGPPGP-PGFFGFPGAMGPRG 213
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 32.7 bits (73), Expect = 0.30
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 31 LPGSPGKTAP-----LPG----------PAQAGA-GQPLPKGCAAVKAEVGIPAPHTSQE 74
LPG+PG T P +PG P G G P G A +K + G PA E
Sbjct: 107 LPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIE 166
Query: 75 VRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCSLPTG 124
+ L APG GL P P + P PG + FPG P G
Sbjct: 167 LDAKGDPGLP-GAPGPQGLPGPP-GFPGPVGPPGP-PGFFGFPGAMGPRG 213
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 32.7 bits (73), Expect = 0.30
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 31 LPGSPGKTAP-----LPG----------PAQAGA-GQPLPKGCAAVKAEVGIPAPHTSQE 74
LPG+PG T P +PG P G G P G A +K + G PA E
Sbjct: 107 LPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIE 166
Query: 75 VRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCSLPTG 124
+ L APG GL P P + P PG + FPG P G
Sbjct: 167 LDAKGDPGLP-GAPGPQGLPGPP-GFPGPVGPPGP-PGFFGFPGAMGPRG 213
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 32.7 bits (73), Expect = 0.30
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 31 LPGSPGKTAP-----LPG----------PAQAGA-GQPLPKGCAAVKAEVGIPAPHTSQE 74
LPG+PG T P +PG P G G P G A +K + G PA E
Sbjct: 107 LPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIE 166
Query: 75 VRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCSLPTG 124
+ L APG GL P P + P PG + FPG P G
Sbjct: 167 LDAKGDPGLP-GAPGPQGLPGPP-GFPGPVGPPGP-PGFFGFPGAMGPRG 213
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 32.3 bits (72), Expect = 0.39
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 33 GSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACG 92
G PGKT P+ GP Q AG+P P+G GIP P Q PGA G
Sbjct: 1399 GPPGKTGPV-GP-QGPAGKPGPEGLR------GIPGPVGEQ------------GLPGAAG 1438
Query: 93 LRSTPCAL-PQALPQARPCPG 112
P + P LP + PG
Sbjct: 1439 QDGPPGPMGPPGLPGLKGDPG 1459
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 32.3 bits (72), Expect = 0.39
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 33 GSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACG 92
G PGKT P+ GP Q AG+P P+G GIP P Q PGA G
Sbjct: 1348 GPPGKTGPV-GP-QGPAGKPGPEGLR------GIPGPVGEQ------------GLPGAAG 1387
Query: 93 LRSTPCAL-PQALPQARPCPG 112
P + P LP + PG
Sbjct: 1388 QDGPPGPMGPPGLPGLKGDPG 1408
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 32.3 bits (72), Expect = 0.39
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 33 GSPGKTAPLPGPAQAGAGQPLPKGCAAVKAEVGIPAPHTSQEVRIHIRRLLSWAAPGACG 92
G PGKT P+ GP Q AG+P P+G GIP P Q PGA G
Sbjct: 1387 GPPGKTGPV-GP-QGPAGKPGPEGLR------GIPGPVGEQ------------GLPGAAG 1426
Query: 93 LRSTPCAL-PQALPQARPCPG 112
P + P LP + PG
Sbjct: 1427 QDGPPGPMGPPGLPGLKGDPG 1447
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.3 bits (72), Expect = 0.39
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 81 RLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCSLPTGGAQTILSLWTWR 136
+LL AA A GLR+ LP+ R PGR PGC LPT A +LW R
Sbjct: 186 QLLREAAAAAQGLRAPAARLPE---PTRRAPGR---PGC-LPTAAAAAADALWRSR 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,060,622
Number of Sequences: 37866
Number of extensions: 755088
Number of successful extensions: 4362
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 4054
Number of HSP's gapped (non-prelim): 673
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.