Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 114326455
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
(2302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 4655 0.0
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 2283 0.0
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 2135 0.0
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 1916 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 531 e-150
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 516 e-145
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 514 e-145
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 514 e-145
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 514 e-145
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 512 e-144
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 495 e-139
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 410 e-114
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 407 e-113
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 398 e-110
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 375 e-103
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 375 e-103
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 368 e-101
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 362 3e-99
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 362 3e-99
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 362 3e-99
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 360 7e-99
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 360 7e-99
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 360 7e-99
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 360 7e-99
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 356 2e-97
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 275 5e-73
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 273 1e-72
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 273 1e-72
gi|4557565 excision repair cross-complementing rodent repair def... 239 2e-62
gi|6912622 RAD54 homolog B [Homo sapiens] 224 8e-58
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 4655 bits (12075), Expect = 0.0
Identities = 2302/2302 (100%), Positives = 2302/2302 (100%)
Query: 1 MKGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVT 60
MKGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVT
Sbjct: 1 MKGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVT 60
Query: 61 IQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVK 120
IQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVK
Sbjct: 61 IQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVK 120
Query: 121 VVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE 180
VVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE
Sbjct: 121 VVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE 180
Query: 181 KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKS 240
KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKS
Sbjct: 181 KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKS 240
Query: 241 KTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQ 300
KTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQ
Sbjct: 241 KTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQ 300
Query: 301 VKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEE 360
VKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEE
Sbjct: 301 VKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEE 360
Query: 361 DAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLK 420
DAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLK
Sbjct: 361 DAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLK 420
Query: 421 RFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDS 480
RFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDS
Sbjct: 421 RFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDS 480
Query: 481 TWELKEDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGV 540
TWELKEDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGV
Sbjct: 481 TWELKEDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGV 540
Query: 541 NWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFN 600
NWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFN
Sbjct: 541 NWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFN 600
Query: 601 TWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELRE 660
TWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELRE
Sbjct: 601 TWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELRE 660
Query: 661 IEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQF 720
IEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQF
Sbjct: 661 IEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQF 720
Query: 721 PSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKK 780
PSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKK
Sbjct: 721 PSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKK 780
Query: 781 YYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHII 840
YYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHII
Sbjct: 781 YYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHII 840
Query: 841 PHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERI 900
PHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERI
Sbjct: 841 PHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERI 900
Query: 901 DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQA 960
DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQA
Sbjct: 901 DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQA 960
Query: 961 QARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFS 1020
QARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFS
Sbjct: 961 QARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFS 1020
Query: 1021 KKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVA 1080
KKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVA
Sbjct: 1021 KKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVA 1080
Query: 1081 SENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEF 1140
SENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEF
Sbjct: 1081 SENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEF 1140
Query: 1141 SDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDV 1200
SDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDV
Sbjct: 1141 SDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDV 1200
Query: 1201 ETICRAILVYCLLHYRGDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVK 1260
ETICRAILVYCLLHYRGDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVK
Sbjct: 1201 ETICRAILVYCLLHYRGDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVK 1260
Query: 1261 SQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKV 1320
SQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKV
Sbjct: 1261 SQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKV 1320
Query: 1321 LGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEK 1380
LGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEK
Sbjct: 1321 LGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEK 1380
Query: 1381 AGRPDDKAIAAEHRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEE 1440
AGRPDDKAIAAEHRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEE
Sbjct: 1381 AGRPDDKAIAAEHRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEE 1440
Query: 1441 ISVIDGDEAQVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRR 1500
ISVIDGDEAQVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRR
Sbjct: 1441 ISVIDGDEAQVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRR 1500
Query: 1501 CEAAFKLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKT 1560
CEAAFKLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKT
Sbjct: 1501 CEAAFKLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKT 1560
Query: 1561 DESLTKYFHGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQ 1620
DESLTKYFHGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQ
Sbjct: 1561 DESLTKYFHGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQ 1620
Query: 1621 VLCHPLLEDRLALCQPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLA 1680
VLCHPLLEDRLALCQPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLA
Sbjct: 1621 VLCHPLLEDRLALCQPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLA 1680
Query: 1681 ARMNYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSL 1740
ARMNYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSL
Sbjct: 1681 ARMNYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSL 1740
Query: 1741 ESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLS 1800
ESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLS
Sbjct: 1741 ESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLS 1800
Query: 1801 PSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQMT 1860
PSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQMT
Sbjct: 1801 PSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQMT 1860
Query: 1861 PELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLD 1920
PELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLD
Sbjct: 1861 PELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLD 1920
Query: 1921 SPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEKEFTVQIKDEE 1980
SPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEKEFTVQIKDEE
Sbjct: 1921 SPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEKEFTVQIKDEE 1980
Query: 1981 GLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVIN 2040
GLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVIN
Sbjct: 1981 GLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVIN 2040
Query: 2041 KVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFLAYMEDRRKQKWQRCKKNNKAELNCL 2100
KVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFLAYMEDRRKQKWQRCKKNNKAELNCL
Sbjct: 2041 KVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFLAYMEDRRKQKWQRCKKNNKAELNCL 2100
Query: 2101 GMEPVQTANSRNGKKGHHTETVFNRVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTG 2160
GMEPVQTANSRNGKKGHHTETVFNRVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTG
Sbjct: 2101 GMEPVQTANSRNGKKGHHTETVFNRVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTG 2160
Query: 2161 SLSLHNTFQHSSSGLQSVSSLGHSSATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHP 2220
SLSLHNTFQHSSSGLQSVSSLGHSSATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHP
Sbjct: 2161 SLSLHNTFQHSSSGLQSVSSLGHSSATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHP 2220
Query: 2221 HPHHHHHHHPGLRAPGYPSSPVTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSER 2280
HPHHHHHHHPGLRAPGYPSSPVTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSER
Sbjct: 2221 HPHHHHHHHPGLRAPGYPSSPVTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSER 2280
Query: 2281 DFSLIDDPMMPANSDSSEDADD 2302
DFSLIDDPMMPANSDSSEDADD
Sbjct: 2281 DFSLIDDPMMPANSDSSEDADD 2302
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 2283 bits (5917), Expect = 0.0
Identities = 1265/2259 (55%), Positives = 1539/2259 (68%), Gaps = 252/2259 (11%)
Query: 91 TQPVTLSSVQ---QAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVKVLSASE 147
T+P ++ Q QA+ S Q L + LQ Q SS+ S G L ++
Sbjct: 446 TRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLCLQRQPPSSK-KSDGSGTYTKLQNTQ 504
Query: 148 VAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNE 207
V +S ++ +++E + KQEKANRI++EAIA+A+ RGE+NIPRV++
Sbjct: 505 VRVMSEK-------------KQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSP 551
Query: 208 DELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKR 267
+ P+ E + EKK R+ + + K+ K KT SK K K+K+ + +GKK+KR
Sbjct: 552 ENFPTASVEGKEEKKGRRMKSKPKDKDSK----KTKTCSKLKEKTKIGKLIITLGKKQKR 607
Query: 268 -NTSSDN-SDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDV 325
N SSD SD E MP Q +D++S QKRRSNRQ+KRKKY ED++ K + EEEV
Sbjct: 608 KNESSDEISDAEQMP-QHTLKDQDS--QKRRSNRQIKRKKYAEDIEGK----QSEEEVKG 660
Query: 326 TGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTE 385
+ IK P P ++P +Q FVENPSEEDAAIVDK+LS R VKKE+ G +
Sbjct: 661 SMKIKKNSA-PLPGEQP-------LQLFVENPSEEDAAIVDKILSSRTVKKEISPGVMID 712
Query: 386 AEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHE-DEEPFNPDY 444
EEFFVKYKNYSYLHCEWAT QL KDKRI QK+KRFK + AQ HFF + +EEPFNPDY
Sbjct: 713 TEEFFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDY 772
Query: 445 VEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHP 504
VEVDR+L+ S DKD GEPVIYYLVKWCSLPYEDSTWELKEDVD KI EF+++Q+ P
Sbjct: 773 VEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRP 832
Query: 505 ELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKT 564
+ +R++RP ++ WKK++ S +YKN NQLREYQLEG+NWLLFNWYNR+NCILADEMGLGKT
Sbjct: 833 DTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKT 892
Query: 565 IQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYE 624
IQSI FL E+ GI GPFL+IAPLSTI NWEREF TWT++N +VYHGSL SRQMIQQYE
Sbjct: 893 IQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYE 952
Query: 625 MYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDS 684
MY +DS+GR+I GAY+F A+ITTFEMIL C EL IEWRCVIIDEAHRLKN+NCKLL+
Sbjct: 953 MYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEG 1012
Query: 685 LKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQA 744
LK M+LEHKVLLTGTPLQNTVEELFSLLHFLEP +FPSES F+++FGDLKTEEQVQKLQA
Sbjct: 1013 LKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQA 1072
Query: 745 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPN 804
ILKPMMLRRLKEDVEK LAPK+ETIIEVELTNIQKKYYRAILEKNFSFLSKGAG TN+PN
Sbjct: 1073 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPN 1132
Query: 805 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLP 864
L+NTMMELRKCCNHPYLI GAEEKIL EFR+ + DFHLQAM++SAGKLVLIDKLLP
Sbjct: 1133 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 1192
Query: 865 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 924
K+KAGGHKVLIFSQMVRCLDILEDYLI +RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF
Sbjct: 1193 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1252
Query: 925 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 984
VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ+KAVKVYRL+TRNSY
Sbjct: 1253 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSY 1312
Query: 985 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGS 1044
EREMFD+ASLKLGLDKAVLQSMSGR+ N+ GIQQ SKKEIEDLLR+GAY AIMEE+DEGS
Sbjct: 1313 EREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGS 1372
Query: 1045 KFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADL 1104
KFCEEDIDQILLRRT TITIESEG+GSTFAKASFVAS NRTDISLDDPNFWQKWAKKA++
Sbjct: 1373 KFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEI 1432
Query: 1105 DMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRH-DRHHAYG 1163
D++ ++ +N+LVIDTPR+RKQTR FS KD+ L E S+ ESE DE+P+ RR DR + YG
Sbjct: 1433 DIEAISGRNSLVIDTPRIRKQTRPFSATKDE-LAELSEAESEGDEKPKLRRPCDRSNGYG 1491
Query: 1164 RTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENIKG 1223
RT+CFRVEK+LLVYGWGRWR+ILSHGRFKR++ E DVE ICRA+L YCL+HYRGDE IKG
Sbjct: 1492 RTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKG 1551
Query: 1224 FIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQ-STFDIHKADWIRKYNPDTLF 1282
FIWDLI+P E+G+T+ELQNH GLS PVPRGRKGKKVK+Q S+FDI KA+W+RKYNP+ L
Sbjct: 1552 FIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLL 1611
Query: 1283 QDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVP 1342
QDE YKKH+KH CNKVLLRVRMLYYL+QEVIG++ +KV G AS+ID+W P D EVP
Sbjct: 1612 QDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVP 1671
Query: 1343 TTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDI 1402
WWD +ADKSLLIGVFKHGYEKYNT+RADPALCFLE+ G+PD+KA+AAE R D
Sbjct: 1672 AEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYM--- 1728
Query: 1403 VEGVDFDKDCEDPEYKPLQGPPKD--QDDEGDP--LMMMDEEISVIDGDEAQVTQQPGHL 1458
D D EDPEYKP KD +DD P L++ D + +++GD+ +
Sbjct: 1729 ------DGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDK---------V 1773
Query: 1459 FWPPGSALTARLRRLVTAYQRSYKREQMK----IEAAERGDRRRRRCEAAFKLKEIARRE 1514
+WP SALT RLRRL+TAYQR+ K Q++ + + EA K A+ E
Sbjct: 1774 YWPTQSALTTRLRRLITAYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEATLNPKMAAKIE 1833
Query: 1515 KQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYFHGFVAM 1574
+QQRWTRRE+ DFYRVVSTFGV +DPD QF W +FR ARL KKTD+SL KY + F++M
Sbjct: 1834 RQQRWTRREEADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSM 1893
Query: 1575 CRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLALC 1634
CR+VCRLP + +E DPN+FI+PITEERASRTLYRIELLR++REQ L HP L +RL LC
Sbjct: 1894 CRRVCRLP--SKEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLC 1951
Query: 1635 QPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGAP 1694
P P+LP WWE HD +LL GAA+HGVS+TD +I++DP+ SF+AA+ NY Q+ A
Sbjct: 1952 HP-NPDLPVWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAH-- 2008
Query: 1695 APSLSRCSTPLLHQQYTSRTASPLPLRP---DAP-------------VEKSPEETATQ-V 1737
SR STPLL Q + +ASPL P DA +++ P+ + + +
Sbjct: 2009 ----SRTSTPLLQQYQVALSASPLTSLPRLLDAKGIILEEMKVKSENLKEEPQSSEEESM 2064
Query: 1738 PSLESLTLKLEHEVVARSRPTPQ-----------DYEMRVSPSDTTPLVSRSV---PPVK 1783
S+E+ TL V ++ PQ + + R+ + T PL P V
Sbjct: 2065 SSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASKKPRVH 2124
Query: 1784 L---EDEDDSDSELDLSKLSPSSSSSSS-------------------------------- 1808
E DSDS+ + S S SSSSSS
Sbjct: 2125 KRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSS 2184
Query: 1809 -SSSSSSSTDESEDEKEE--KLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQM---TPE 1862
SSSSSSS++ES+ ++EE K + K YDEES+ SL+ +QD +D QM TPE
Sbjct: 2185 SSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQD--ETQDSFQMNNGTPE 2242
Query: 1863 LLLLQE---RQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLL 1919
+ + AS WPKDRV+INR+D +CQ VL GKWPS+RRS + T LL
Sbjct: 2243 SAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDANTVASFYT-TKLL 2301
Query: 1920 DSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEK--------- 1970
DSP EY D VPTP + ++ + T ++G+ +K
Sbjct: 2302 DSPGAAT-EYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLKLTFQKQGLAQKRPFDGEDGA 2360
Query: 1971 ----EFTVQIKD----EEGLKLTFQKH----------KLMANGVMGDGHPLFHKKKGNRK 2012
++ ++++ E + F K L ANGV+ D P+ K++G RK
Sbjct: 2361 LGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLGANGVILDNQPIVKKRRGRRK 2420
Query: 2013 KLVELEV---ECMEEPNHLDV------------------------DLETRIPVINKVDGT 2045
+ +++ + PNH+ + D E+ +PVIN DGT
Sbjct: 2421 NVEGVDIFFFNRNKPPNHVSLGLTSSQISTGINPALSYTQPQGIPDTESPVPVINLKDGT 2480
Query: 2046 LLVGEDAPRRAELEMWLQGHPEFAVD-----PRFLAYMEDRRKQKWQRCKKNNKAELNCL 2100
L G+DAP+R +LE WL+ HP + D PR + E R KQK RC+ NK ++N L
Sbjct: 2481 RLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLH-EGRPKQKRHRCRNPNKLDVNSL 2539
Query: 2101 -GMEPVQTANSRNGKK-----------------------------------GHHTETVFN 2124
G E VQ N RN +K G E+++
Sbjct: 2540 TGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYE 2599
Query: 2125 RVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLS 2163
R+L GP+ E +R RR + ++K A S S+S
Sbjct: 2600 RILTGPVVREEVSRRGRRPKSGIAKATAAAAAASATSVS 2638
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 2135 bits (5532), Expect = 0.0
Identities = 1181/2168 (54%), Positives = 1435/2168 (66%), Gaps = 221/2168 (10%)
Query: 174 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELP--SVRPEEEGEKKRRKKSAGER 231
+ +KK++K N IVAE ++ G+ + P ++ EL S+ +E +KK+++ A +
Sbjct: 595 QQKKKKKKNNHIVAED--PSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKD 652
Query: 232 LKEEK-------PKKSKTSGASKT-----KGKSKLNTITPVVGKK--------------- 264
KE K PK+ KT A K + K+K T P KK
Sbjct: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKK 712
Query: 265 ---RKRNTSSDNSDVEVMPAQSP--REDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEE 319
+ + S+NSD++ P SP EDE+ +QKRRS+RQVKRK+YTEDL+ KI+D EE
Sbjct: 713 KVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISD-EE 771
Query: 320 EEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELP 379
++ D G P QE + + +V+K++S R VKK+
Sbjct: 772 ADDADAAGRDSPSNTSQSEQQES---------------VDAEGPVVEKIMSSRSVKKQKE 816
Query: 380 SGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEP 439
SG+ E EEF+VKYKN+SYLHC+WA+I LEKDKRI QK+KRFK K Q + ++E
Sbjct: 817 SGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDEL 876
Query: 440 FNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRI 499
FNPDYVEVDRI+D + S D D GEPV +YLVKWCSLPYEDSTWE ++D+D+ KI EF+++
Sbjct: 877 FNPDYVEVDRIMDFARSTD-DRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKL 935
Query: 500 QSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEM 559
SR PE +RV RP A WKK E S EYKN N+LREYQLEGVNWLLFNWYN +NCILADEM
Sbjct: 936 MSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEM 995
Query: 560 GLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQM 619
GLGKTIQSI FL E+Y GIHGPFLVIAPLSTI NWEREF TWTE+N +VYHGS ASR+
Sbjct: 996 GLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRT 1055
Query: 620 IQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC 679
IQ YEMY KD +GR+I G+YKF A+ITTFEMIL+DCPELR I WRCV+IDEAHRLKNRNC
Sbjct: 1056 IQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNC 1115
Query: 680 KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQV 739
KLL+ LK MDLEHKVLLTGTPLQNTVEELFSLLHFLEPS+FPSE+ F+++FGDLKTEEQV
Sbjct: 1116 KLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQV 1175
Query: 740 QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGH 799
QKLQAILKPMMLRRLKEDVEKNLAPK+ETIIEVELTNIQKKYYRAILEKNF+FLSKG G
Sbjct: 1176 QKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQ 1235
Query: 800 TNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLI 859
N+PNLLNTMMELRKCCNHPYLINGAEEKIL EF+E + DF LQAM+++AGKLVLI
Sbjct: 1236 ANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLI 1295
Query: 860 DKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKP 919
DKLLPKLKAGGH+VLIFSQMVRCLDILEDYLIQRRY YERIDGRVRGNLRQAAIDRFSKP
Sbjct: 1296 DKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1355
Query: 920 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 979
DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK+VK+YRLI
Sbjct: 1356 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLI 1415
Query: 980 TRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEE 1039
TRNSYEREMFDKASLKLGLDKAVLQSMSGR+ G+QQ SKKEIEDLLRKGAY A+M+E
Sbjct: 1416 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDE 1475
Query: 1040 DDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWA 1099
+DEGSKFCEEDIDQILLRRT TITIESEGKGSTFAKASFVAS NRTDISLDDPNFWQKWA
Sbjct: 1476 EDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWA 1535
Query: 1100 KKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRS---RRH 1156
KKA+LD+D LN +NNLVIDTPRVRKQTR +S +K+D+L+EFSDLES+ +E+P + R
Sbjct: 1536 KKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQ 1595
Query: 1157 DRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYR 1216
D+ Y R++CFRVEK+LLVYGWGRW DILSHGR+KR++TE+DVETICR ILVYCL HY+
Sbjct: 1596 DKSQGYARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTILVYCLNHYK 1655
Query: 1217 GDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDI-HKADWIRK 1275
GDENIK FIWDLI+P +G+T+ L NHSGLS PVPRGRKGKKVK+QST + ADW+
Sbjct: 1656 GDENIKSFIWDLITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLAS 1715
Query: 1276 YNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPV 1335
NPD LFQ++SYKKHLKH CNKVLLRVRMLYYLRQEVIGDQA+K+L GA +SE D+W P
Sbjct: 1716 CNPDALFQEDSYKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADKILEGADSSEADVWIPE 1775
Query: 1336 VDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRV 1395
EVP WWD EADKSLLIGVFKHGYEKYN+MRADPALCFLE+ G PD KAIAAE R
Sbjct: 1776 PFHAEVPADWWDKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRG 1835
Query: 1396 LDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISV---IDGDEAQVT 1452
D +D +G +FD++ EDPEYKP + P KD+ DE D+E S+ G ++
Sbjct: 1836 TDMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPSEDKEESMEIHATGKHSESN 1895
Query: 1453 QQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIAR 1512
+ G L+WP S LT RLRRL+TAYQRSYKR+QM+ EA + DRRRRR + E R
Sbjct: 1896 AELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQEALMKTDRRRRRPREEVRALEAER 1955
Query: 1513 R----EKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYF 1568
EK+Q+WTRRE+ DFYRVVSTFGV +DP QF W++FR FARLDKK+DESL KYF
Sbjct: 1956 EAIISEKRQKWTRREEADFYRVVSTFGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYF 2015
Query: 1569 HGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLE 1628
FVAMCR+VCR+P DEPPD + IEPITEERASRTLYRIELLR++REQVL HP L
Sbjct: 2016 SCFVAMCRRVCRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHPQLG 2075
Query: 1629 DRLALCQPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQN 1688
+RL LCQP +LP+WWE RHD +LL GAA+HGVS+TD +I+ DP+ SFL A N+ QN
Sbjct: 2076 ERLKLCQP-SLDLPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQN 2134
Query: 1689 HQAGAPAP----SLSRCSTPL------LHQQYTSRTASPLPLRPDAPVEKSPEETATQVP 1738
AG + ++ TP + + A P+ P K E +
Sbjct: 2135 RGAGNTSSLNPLAVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEE 2194
Query: 1739 SLESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSK 1798
+ + + E A + + + +DT S+S+ K +ED+ + D K
Sbjct: 2195 ETDGSGKESKQECEAEASSVKNELKGVEVGADTG---SKSISE-KGSEEDEEEKLEDDDK 2250
Query: 1799 LSPSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEES-------LLSLTMSQDGF 1851
SS + + S + DE + D++R Y E+ L T + +
Sbjct: 2251 SEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFW 2310
Query: 1852 PNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQ------- 1904
P + M L + E +WP +R R Q ++ G P++ S
Sbjct: 2311 PKD--RVMINRLDNICEAVLKGKWPVNR----RQMFDFQGLIPGYTPTTVDSPLQKRSFA 2364
Query: 1905 --EMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPR------------------------ 1938
MV + + SP L+ + + VP R
Sbjct: 2365 ELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMV 2424
Query: 1939 -----SSSAASMAEEEASAVSTAAAQ-------FTKLRRGMDEKEFTVQIKD-------- 1978
S + +E+ +S A+ + F+ L + + D
Sbjct: 2425 AQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSLSSKFILPNVSTPVSDAFKTQMEL 2484
Query: 1979 -EEGLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEE------------- 2024
+ GL T +H L NG + DG P +++G RK + L++ M
Sbjct: 2485 LQAGLSRTPTRHLL--NGSLVDGEPPMKRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVT 2542
Query: 2025 ---------------PNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFA 2069
P+ +D +TRIPVIN DGT LVGEDAP+ +L WL+ HP +
Sbjct: 2543 KAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYT 2602
Query: 2070 VD-PRFLAYMED-------RRKQKWQRCKKNNKAELNCL-GMEPVQTANSRNGKK----- 2115
VD P ++ D + KQK RC+ NK ++N L G E V N RNGKK
Sbjct: 2603 VDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTGEERVPVVNKRNGKKMGGAM 2662
Query: 2116 ------------------------------GHHTETVFNRVLPGPIA-PESSKKRARRMR 2144
G E++F+R+L GP+ E + +R RR +
Sbjct: 2663 APPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGPVVRGEGASRRGRRPK 2722
Query: 2145 PDLSKMMA 2152
++++ A
Sbjct: 2723 SEIARAAA 2730
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 1916 bits (4963), Expect = 0.0
Identities = 994/1629 (61%), Positives = 1208/1629 (74%), Gaps = 50/1629 (3%)
Query: 133 ASSGLSVVKVLSASEVAALSSPASSAPHSG------GKTGMEENRRLEHQKKQEKANRIV 186
AS L + +A E AA P H+G G TG+++ R+ + QE A +
Sbjct: 52 ASHCLPQKDLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGS 111
Query: 187 AEAIARARARGEQNIPRVLNEDELPSVRPE------EEGEKKRRKKSAGERLKEEKPKKS 240
+ + + + E P+ + + P E ++G KK RK KE K K+S
Sbjct: 112 KDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRS 171
Query: 241 KTSGASKTKGK--SKLNTITPVVGKK---RKRNTSSDNSDVE---VMPA-QSPREDEESS 291
T A++TK + SK TPV KK RK T+ ++ +++ P+ +SP E ES+
Sbjct: 172 CTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTEST 231
Query: 292 -IQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSM 350
QKRRS RQVKR+KY EDLD K+ DD+ E + V G + + + ++
Sbjct: 232 DSQKRRSGRQVKRRKYNEDLDFKVVDDDGET-IAVLGAGRTSAL-----------SASTL 279
Query: 351 QFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLE 410
+ E P E+DA I++K+L+ + V++ P + E F+VKY+N+SYLHC+WAT+ +LE
Sbjct: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELE 339
Query: 411 KDKRIHQKLKRFKTKMAQMRHFFHE-DEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYL 469
KD RI QK+KRF+ K AQM+H F E DE+ FNPDYVEVDRIL+ +H+ D + GE V +YL
Sbjct: 340 KDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYL 399
Query: 470 VKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNR 529
VKWCSLPYE+STWEL+EDVD K++EF+ +Q PE+K V RP + +W+KLE S EYKN
Sbjct: 400 VKWCSLPYEESTWELEEDVDPAKVKEFESLQVL-PEIKHVERPASDSWQKLEKSREYKNS 458
Query: 530 NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPL 589
NQLREYQLEG+NWLLFNWYNR+NCILADEMGLGKTIQSI FL E++ GIHGPFL+IAPL
Sbjct: 459 NQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPL 518
Query: 590 STITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 649
STITNWEREF TWTEMN IVYHGS SRQMIQQYEM +D++G + G +KF +ITTFE
Sbjct: 519 STITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFE 578
Query: 650 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 709
MIL+DCPEL++I W CVIIDEAHRLKNRNCKLL+ LK M LEHKVLLTGTPLQN+VEELF
Sbjct: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
Query: 710 SLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETI 769
SLL+FLEPSQFPSE+ FL++FGDLKTEEQV+KLQ+ILKPMMLRRLK+DVEKNLAPKQETI
Sbjct: 639 SLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETI 698
Query: 770 IEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKI 829
IEVELTNIQKKYYRAILEKNFSFL+KGA NMPNL+NTMMELRKCCNHPYLINGAEEKI
Sbjct: 699 IEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKI 758
Query: 830 LTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 889
L +FR+ DF LQAM+++AGKLVLIDKLLPKL AGGHKVLIFSQMVRCLDILEDY
Sbjct: 759 LEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDY 818
Query: 890 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 949
LIQRRY YERIDGRVRGNLRQAAIDRF KPDSDRFVFLLCTRAGGLGINLTAADTCIIFD
Sbjct: 819 LIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 878
Query: 950 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009
SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQ ++ R
Sbjct: 879 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDIN-R 937
Query: 1010 DGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGK 1069
G G+QQ SK E+EDLLRKGAY A+M+E+DEGSKFCEEDIDQIL RRT TITI+SEGK
Sbjct: 938 KGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGK 997
Query: 1070 GSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHF 1129
GSTFAKASFVAS NRTDISLDDPNFWQKWAK A+LD + N K +LVID PRVRKQT+H+
Sbjct: 998 GSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHY 1057
Query: 1130 STLKDDDLVEFSDLESEDDERP-RSRR-HDRHHAYGRTDCFRVEKHLLVYGWGRWRDILS 1187
++ ++D+L+EFS+L+S+ DERP RSRR +D+ Y R +CFRVEK+LL++GWGRW+DIL+
Sbjct: 1058 NSFEEDELMEFSELDSDSDERPTRSRRLNDKARRYLRAECFRVEKNLLIFGWGRWKDILT 1117
Query: 1188 HGRFKRRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAENGKTKELQNHSGLS 1247
HGRFK + E+D+E ICRA+LVYC+ HY+GDE IK FIW+LI+P ++G+ + LQNHSGLS
Sbjct: 1118 HGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLS 1177
Query: 1248 IPVPRGRKGKKVKSQSTF-DIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLY 1306
PVPRGRKGKK K+Q ++ ADW+ NP+ + D+ YKKHLK CNKVLLRVRMLY
Sbjct: 1178 APVPRGRKGKKTKNQLLIPELKDADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLY 1237
Query: 1307 YLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKY 1366
YL+ E++G+ AEK G+ A E+D+ P +D +E+P WWD+EADKSLLIGVFKHGYE+Y
Sbjct: 1238 YLKAEILGEAAEKAFEGSPARELDVPLPDIDYMEIPVDWWDAEADKSLLIGVFKHGYERY 1297
Query: 1367 NTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDIVEGVDFDK-DCEDPEYKPLQGPPK 1425
N MRADPALCFLEK G PD+K+++AE V D SDI E + DK D + + LQ +
Sbjct: 1298 NAMRADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIPERGNTDKEDNAEDKVDGLQKQTE 1357
Query: 1426 DQDDEGDPLMMMDEEISVIDGDEAQVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQ 1485
D GD + ++ D AQ P WP SALTARLRRLVT YQR ++E
Sbjct: 1358 SSSDGGDGVFSEKKD----DSRAAQDGSDPDKSPWPVSSALTARLRRLVTVYQRCNRKEL 1413
Query: 1486 MKIEAAERGDRRRRRCEAAFKL---KEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDT 1542
+ E G++ E F+ ++ +E Q+RWTRREQ DFYR VS+FGV YD +
Sbjct: 1414 CRPEILGPGNQGYWVQEEMFRRTSEMDLINKEAQKRWTRREQADFYRTVSSFGVVYDQEK 1473
Query: 1543 MQFHWDRFRTFARLDKKTDESLTKYFHGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEE 1602
F W +FR +RLDKK+DESL +YF+ FVAMCR VCRLP PPD +++EPITEE
Sbjct: 1474 KTFDWTQFRIISRLDKKSDESLEQYFYSFVAMCRNVCRLPTWKDGGPPDTTIYVEPITEE 1533
Query: 1603 RASRTLYRIELLRRLREQVLCHPLLEDRLALCQPPGPELPKWWEPVRHDGELLRGAARHG 1662
RA+RTLYRIELLR++REQVL P L +RL LC+ P LP WWE +HD +LL G A+HG
Sbjct: 1534 RAARTLYRIELLRKVREQVLKCPQLHERLQLCR-PSLYLPVWWECGKHDRDLLIGTAKHG 1592
Query: 1663 VSQTDCNIMQDPDFSFLAARMNYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRP 1722
+++TDC IM DP SFL A NY Q+ ++G AP C + Y S T S + R
Sbjct: 1593 LNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNLCCLYQTNSKLYESLTYSQMS-RT 1651
Query: 1723 DAPVEKSPE 1731
+E PE
Sbjct: 1652 SESLENEPE 1660
Score = 60.1 bits (144), Expect = 2e-08
Identities = 73/278 (26%), Positives = 110/278 (39%), Gaps = 47/278 (16%)
Query: 1690 QAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSLESLTLKLEH 1749
Q PAP+ +C H ++ R L + +EK P+ + ++ T+ +E
Sbjct: 1927 QRAFPAPAACQC-----HCKHMERWMHGLE-NDEFEIEK-PKAYIPDLFKSKTNTIAMEG 1979
Query: 1750 EVVA-RSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSS 1808
E A S+P +E+ P + P LE + ++D
Sbjct: 1980 EPTAIPSQPFKVKHELLKEPWKESAEGQNVFPTYPLEGSELKSEDMDFE----------- 2028
Query: 1809 SSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDG-FPNEDGEQMTPELL-LL 1866
++ + +++ Q Y EE S T G +E E P + LL
Sbjct: 2029 --------NKDDYDRDGNCHSQDYPGKYSEEESKSSTSGITGDIGDELQEARAPTIAQLL 2080
Query: 1867 QERQ--RASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLDSPSL 1924
QE+ SEWPKDRV+INR+D +C VL GKWPSS++ + T L +P L
Sbjct: 2081 QEKTLYSFSEWPKDRVIINRLDNICHVVLKGKWPSSQQYEPSGT----------LPTPVL 2130
Query: 1925 TPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTK 1962
T S + S S AE S + AAQ K
Sbjct: 2131 T------SSAGSRTSLSEPEAAEHSFSNGAALAAQIHK 2162
Score = 47.8 bits (112), Expect = 1e-04
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 2061 WLQGHPEFAVD-PRFLAYMEDRRKQKWQRCKKNNKAELNCL-GMEPVQTANSRNGKKGHH 2118
WL+ +++++ P F A D+ KQ+ RCK+ K +++ L G E V G +G
Sbjct: 2361 WLRQQADYSLEVPGFGANFSDKPKQRRPRCKEPGKLDVSSLSGEERVPAIPKEPGLRGFL 2420
Query: 2119 TETVFNRVLPGPIAPESS-KKRARRMRPDLSKMMALMQGGSTG 2160
E FN L PI ++ ++R RR R +L K +++ +G
Sbjct: 2421 PENKFNHTLAEPILRDTGPRRRGRRPRSELLKAPSIVADSPSG 2463
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 531 bits (1367), Expect = e-150
Identities = 386/1144 (33%), Positives = 588/1144 (51%), Gaps = 152/1144 (13%)
Query: 129 SSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAE 188
SS AS S S SE S P S H E+ + + + E A
Sbjct: 20 SSHSASEEASGSDSGSQSESEQGSDPGSG--HGSESNSSSESSESQSESESESAGSKSQP 77
Query: 189 AIARARARGEQNIPRVLNEDELPSVRPEEEGEKKR---RKKSAGERLKEEKPKKSKTSGA 245
+ A+ + R+ + ++ P+ G ++ R++ + +KEE S+ SG+
Sbjct: 78 VLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSE-SGS 136
Query: 246 SKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRS-------N 298
K +G+ +L KK+++ + D + + E E+ ++ RR
Sbjct: 137 PKRRGQRQL--------KKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPK 188
Query: 299 RQVKRKKYTEDLDIKITDDEEEEEVDVTGP--------IKPEPILPEPVQEPDGETLPSM 350
+VK++ T+ K D +E++ D P K + E D + L M
Sbjct: 189 PRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEM 248
Query: 351 QFFVENPSEEDAAIVDKVLSMRIVKKEL---------------PSGQY-TEAEE----FF 390
+ ++++ ++KVL R+ KK PSG + TE +E +
Sbjct: 249 TGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQYL 308
Query: 391 VKYKNYSYLHCEWATISQLEKDK-RIHQKLKRFKTKMAQMRHFFH----EDEEPFN---- 441
+K+K +SY+H W + L++ K + +KL+ FK K +++ + ED E FN
Sbjct: 309 IKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQE 368
Query: 442 ------PDYVEVDRILDESHSIDK--------------DNGEPVIYYLVKWCSLPYEDST 481
Y V+R++ S + EP YL KW LPY + +
Sbjct: 369 LASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPE--YLCKWMGLPYSECS 426
Query: 482 WELKEDVDEGKI-REFKR-IQSRHP----------ELKRVN-RPQASAWKKLELSHEYKN 528
WE DE I ++F+ I S H E K + RP+ A KK +N
Sbjct: 427 WE-----DEALIGKKFQNCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGEN 481
Query: 529 RNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG-IHGPFLVIA 587
+LR+YQLEG+NWL +W + ILADEMGLGKTIQ+I+FL +++ ++GPFL++
Sbjct: 482 L-ELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVV 540
Query: 588 PLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALIT 646
PLST+T+W+REF W E+N +VY G L SR I++YE ++ KF+ALIT
Sbjct: 541 PLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTK------RLKFNALIT 594
Query: 647 TFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVE 706
T+E++L D L I W + +DEAHRLKN + L +L H++L+TGTPLQN+++
Sbjct: 595 TYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 654
Query: 707 ELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQ 766
EL+SLLHF+ P +F +F +D G + E Q L +L+P +LRR+K+DVEK+L K
Sbjct: 655 ELWSLLHFIMPEKFEFWEDFEEDHGKGR-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKV 713
Query: 767 ETIIEVELTNIQKKYYRAILEKNFSFLSKGA-GHTNMPNLLNTMMELRKCCNHPYLINGA 825
E I+ VE++ +QK+YY+ IL +N+ L+KG G T+ LN +MEL+KCCNH YLI
Sbjct: 714 EQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS--GFLNIVMELKKCCNHCYLIKPP 771
Query: 826 EEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDI 885
EE +E L +++RS+GKL+L+DKLL +L+ G++VLIFSQMVR LDI
Sbjct: 772 EENERENGQEI---------LLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDI 822
Query: 886 LEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC 945
L +YL + Y ++R+DG ++G +R+ A+D F+ S+ F FLL TRAGGLGINL +ADT
Sbjct: 823 LAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTV 882
Query: 946 IIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQS 1005
+IFDSDWNPQNDLQAQAR HRIGQ K V +YRL+T+ + E E+ ++A K+ LD V+Q
Sbjct: 883 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQR 942
Query: 1006 M--SGR-----DGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQIL--- 1055
M +GR + + F+K+E+ +L+ GA E + E S+ E DID+IL
Sbjct: 943 MDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA 1002
Query: 1056 -LRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQK---WAKKADLDMDLLNS 1111
R T ++ S F A+F E+ ++ W + ++ ++ +
Sbjct: 1003 ETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQK 1062
Query: 1112 KNNLVIDTPRVRKQTRHFSTLKDDDLVEF-----------SDLESEDDE-------RPRS 1153
+ + PR+R T+ T D E S+ E DD+ RPRS
Sbjct: 1063 ELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSDDDKKPKRRGRPRS 1122
Query: 1154 RRHD 1157
R D
Sbjct: 1123 VRKD 1126
Score = 35.8 bits (81), Expect = 0.50
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1346 WDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEK 1380
W E D LL+G+++HGY + ++ DP L +K
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDK 1295
Score = 34.7 bits (78), Expect = 1.1
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 192 RARARGEQNIPRVLNED--ELPSVR----PEEEGE-----------KKRRKKSAGERLKE 234
+ R + E +PR+ E EL S R P EEGE KK++KK + KE
Sbjct: 1343 KPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKE 1402
Query: 235 EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSS-DNSDVEVMPAQSP---REDEES 290
++ K K + KSK P G + + S V + P EDE+
Sbjct: 1403 KQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIGEDEDD 1462
Query: 291 SIQK 294
+ +
Sbjct: 1463 DLDQ 1466
Score = 33.1 bits (74), Expect = 3.2
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 30/103 (29%)
Query: 151 LSSPA-SSAPHSGGKT---GMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLN 206
LSSP S P G+ G+E++ + QKK+E N
Sbjct: 1363 LSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKE----------------------N 1400
Query: 207 EDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTK 249
+++ S R ++EG+K+R+K + K+EKPK +SK+K
Sbjct: 1401 KEKQMSSRKDKEGDKERKK----SKDKKEKPKSGDAKSSSKSK 1439
Score = 32.7 bits (73), Expect = 4.2
Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 27/151 (17%)
Query: 218 EGEKKRRKKSAGE--RLKEEKPKKSKTSGASKTKGKSKLNTITP---------------- 259
+G +K+ + GE +LK+ KP+ K + + K + + +P
Sbjct: 1323 KGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDG 1382
Query: 260 ----VVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKIT 315
+ KK+K+ + +N + ++ S R+D+E ++R+ ++ K K + D
Sbjct: 1383 LEKSPMKKKQKKKENKENKEKQM----SSRKDKEGD-KERKKSKDKKEKPKSGDAKSSSK 1437
Query: 316 DDEEEEEVDVTGPIKPEPILPEPVQEPDGET 346
+ V +T +P PI + + D ET
Sbjct: 1438 SKRSQGPVHITAGSEPVPIGEDEDDDLDQET 1468
Score = 32.0 bits (71), Expect = 7.2
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1750 EVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSS 1809
E++ + + E R + ++ R K +DSDS+ + S + S
Sbjct: 1045 EIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTE------SKRQAQRS 1098
Query: 1810 SSSSSSTDESEDEKEEKLTDQSRS 1833
S+S S T++S+D+K+ K + RS
Sbjct: 1099 SASESETEDSDDDKKPKRRGRPRS 1122
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 516 bits (1328), Expect = e-145
Identities = 342/932 (36%), Positives = 515/932 (55%), Gaps = 100/932 (10%)
Query: 216 EEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSD 275
+ E E++R K S E + +PK S + + KSK ++G+K+++ SS+ D
Sbjct: 163 DSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGK--KILGQKKRQIDSSEEDD 220
Query: 276 VEVMPAQSPREDEESSIQKRRSNRQVK-RKKYTEDLDIKITDDEEEEEVDVTGPIKPEPI 334
++E+ KR S RQ Y ED ++K D+ E +
Sbjct: 221 ----------DEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLE------------V 258
Query: 335 LPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEE-----F 389
E V +P+ E +++ F++ A + P+ + + +E +
Sbjct: 259 CGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQY 318
Query: 390 FVKYKNYSYLHCEWATISQLEKDK-RIHQKLKRFKTKMAQMRHFFH----EDEEPFN--- 441
+K+K +S++H W T L++ R +KL +K K + + + ED E +N
Sbjct: 319 LIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQ 378
Query: 442 -------PDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWE--------LKE 486
Y V+RI+ +HS K YY KW LPY + +WE +
Sbjct: 379 ELTDDLHKQYQIVERII--AHSNQKSAAGYPDYYC-KWQGLPYSECSWEDGALISKKFQA 435
Query: 487 DVDEGKIREFKRIQSRHPELKRVN----RPQASAWKKLELSHEYKNRNQLREYQLEGVNW 542
+DE F R QS+ K RP+ A KK +LR+YQL G+NW
Sbjct: 436 CIDE----YFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNW 491
Query: 543 LLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG-IHGPFLVIAPLSTITNWEREFNT 601
L +W +CILADEMGLGKTIQ+I+FL +++ ++GPFL++ PLST+T+W+RE T
Sbjct: 492 LAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQT 551
Query: 602 W-TEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELRE 660
W ++MN +VY G + SR MI+ +E ++ KF+ L+TT+E++L D L
Sbjct: 552 WASQMNAVVYLGDINSRNMIRTHEWTHHQTK------RLKFNILLTTYEILLKDKAFLGG 605
Query: 661 IEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQF 720
+ W + +DEAHRLKN + L +L H++L+TGTPLQN+++EL+SLLHF+ P +F
Sbjct: 606 LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF 665
Query: 721 PSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKK 780
S +F ++ G + E L L+P +LRR+K+DVEK+L K E I+ +E++ +QK+
Sbjct: 666 SSWEDFEEEHGKGR-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 724
Query: 781 YYRAILEKNFSFLSKGA-GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839
YY+ IL +N+ LSKG+ G T+ LN MMEL+KCCNH YLI + +EA
Sbjct: 725 YYKWILTRNYKALSKGSKGSTS--GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEA--- 779
Query: 840 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899
LQ ++RS+GKL+L+DKLL +L+ G++VLIFSQMVR LDIL +YL R++ ++R
Sbjct: 780 ------LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQR 833
Query: 900 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 959
+DG ++G LR+ A+D F+ S+ F FLL TRAGGLGINL +ADT +IFDSDWNPQNDLQ
Sbjct: 834 LDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 893
Query: 960 AQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSM--SGRDGNITG-- 1015
AQAR HRIGQ K V +YRL+T+ S E ++ ++A K+ LD V+Q M +G+ TG
Sbjct: 894 AQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSA 953
Query: 1016 ---IQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTT------TITIES 1066
F+K+E+ +L+ GA E + E + E DID+IL R T +T+
Sbjct: 954 PSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGD 1013
Query: 1067 EGKGSTFAKASFVASENRTDISLDDPNFWQKW 1098
E S F A+F ++ + DI L+ + W
Sbjct: 1014 E-LLSQFKVANF-SNMDEDDIELEPERNSKNW 1043
Score = 37.7 bits (86), Expect = 0.13
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1785 EDEDDSDSELDLSKLSPS--SSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLL 1842
ED DDS SE+ K S S S S S S ESE+E+E+ D++ S Y+ ++ +
Sbjct: 130 EDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESD-YEPKNKV 188
Query: 1843 SLTMSQDGFPNEDGEQM 1859
Q+ +++G+++
Sbjct: 189 KSRKPQNRSKSKNGKKI 205
Score = 36.6 bits (83), Expect = 0.29
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 1346 WDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDD 1386
W E D +LLIG++++GY + ++ DP L K PDD
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKI-LPDD 1292
Score = 31.6 bits (70), Expect = 9.4
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 1803 SSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQMTPE 1862
+SS+S S SSS+++S+D E R K DE+ MS G P++ G E
Sbjct: 116 ASSNSGSEEDSSSSEDSDDSSSE----VKRKKHKDED----WQMSGSGSPSQSGSDSESE 167
Query: 1863 LLLLQERQRAS 1873
+ER+++S
Sbjct: 168 ----EEREKSS 174
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 514 bits (1325), Expect = e-145
Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%)
Query: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426
EFFVK+ SY HC WA QLE + + + K M
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
Query: 427 AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
+ H+ +E+ + P+++ V RI+ +HS+DK +YLVKW LPY+ STW
Sbjct: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 663
Query: 483 ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526
E +++++ + E K+ RH EL + +P+ KK EL + Y
Sbjct: 664 E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 722
Query: 527 KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578
+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL +Y G
Sbjct: 723 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782
Query: 579 -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636
GPFLV APLSTI NWEREF W + + Y G SR +I++ E +D+ +
Sbjct: 783 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 842
Query: 637 GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688
A+ KF L+T++E+I D L I W C+++DEAHRLKN K L
Sbjct: 843 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 902
Query: 689 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748
++HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P
Sbjct: 903 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 962
Query: 749 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L S+G G N +LLN
Sbjct: 963 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1020
Query: 808 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867
MM+L+KCCNHPYL A E+ + + A+++S+GKL+L+ K+L KLK
Sbjct: 1021 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
Query: 868 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927
GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +F FL
Sbjct: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
Query: 928 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987
L TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
Query: 988 MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047
+ A K+ L V+ R G + SK+E++D+L+ G +E++ +K
Sbjct: 1194 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1246
Query: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090
EED I LL R T +++ + S+F A +V E ++
Sbjct: 1247 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
Query: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135
DP++W+K + + DL +L K RVRKQ + ++D
Sbjct: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1358
Query: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166
+ S+ E ED DERP RR + D
Sbjct: 1359 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
Score = 42.7 bits (99), Expect = 0.004
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 33/218 (15%)
Query: 114 RLSVPVKVVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHS--------GGKT 165
R S+P +++ P A S + + + + E +A +SP +S P + G +T
Sbjct: 1511 RWSMP-ELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRT 1569
Query: 166 GMEENRRLEHQKKQEKANRI------VAEAIARARARGEQNIPRVLN-EDELPSVRPE-- 216
+E+ ++K EK +RI A+A + A + GE+ PR + EDE+P V E
Sbjct: 1570 PLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEME 1629
Query: 217 -EEGEKKRRKKSAGERLKEEKPKKSKTSG---ASKTKGKSKLNTITPVVGKKRKRNTSSD 272
E G + R+KSA E E+ ++ G + +G++ G KR
Sbjct: 1630 PEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGET---------GDLGKREDVKG 1680
Query: 273 NSDVEVMPAQSPRED--EESSIQKRRSNRQVKRKKYTE 308
+ ++ P PR + E +K R + +TE
Sbjct: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTE 1718
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 514 bits (1325), Expect = e-145
Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%)
Query: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426
EFFVK+ SY HC WA QLE + + + K M
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
Query: 427 AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
+ H+ +E+ + P+++ V RI+ +HS+DK +YLVKW LPY+ STW
Sbjct: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 663
Query: 483 ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526
E +++++ + E K+ RH EL + +P+ KK EL + Y
Sbjct: 664 E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 722
Query: 527 KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578
+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL +Y G
Sbjct: 723 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782
Query: 579 -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636
GPFLV APLSTI NWEREF W + + Y G SR +I++ E +D+ +
Sbjct: 783 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 842
Query: 637 GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688
A+ KF L+T++E+I D L I W C+++DEAHRLKN K L
Sbjct: 843 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 902
Query: 689 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748
++HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P
Sbjct: 903 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 962
Query: 749 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L S+G G N +LLN
Sbjct: 963 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1020
Query: 808 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867
MM+L+KCCNHPYL A E+ + + A+++S+GKL+L+ K+L KLK
Sbjct: 1021 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
Query: 868 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927
GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +F FL
Sbjct: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
Query: 928 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987
L TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
Query: 988 MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047
+ A K+ L V+ R G + SK+E++D+L+ G +E++ +K
Sbjct: 1194 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1246
Query: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090
EED I LL R T +++ + S+F A +V E ++
Sbjct: 1247 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
Query: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135
DP++W+K + + DL +L K RVRKQ + ++D
Sbjct: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1358
Query: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166
+ S+ E ED DERP RR + D
Sbjct: 1359 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
Score = 39.3 bits (90), Expect = 0.045
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 114 RLSVPVKVVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHS--------GGKT 165
R S+P +++ P A S + + + + E +A +SP +S P + G +T
Sbjct: 1511 RWSMP-ELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRT 1569
Query: 166 GMEENRRLEHQKKQEKANRI------VAEAIARARARGEQNIPRVLN-EDELPSVRPEEE 218
+E+ ++K EK +RI A+A + A + GE+ PR + EDE+P V E E
Sbjct: 1570 PLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEME 1629
Query: 219 GEKKRRKKSAGERLKEEKPK 238
E R G+R K E K
Sbjct: 1630 PEPGYR----GDREKSEDVK 1645
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 514 bits (1325), Expect = e-145
Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%)
Query: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426
EFFVK+ SY HC WA QLE + + + K M
Sbjct: 608 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 667
Query: 427 AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
+ H+ +E+ + P+++ V RI+ +HS+DK +YLVKW LPY+ STW
Sbjct: 668 VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 722
Query: 483 ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526
E +++++ + E K+ RH EL + +P+ KK EL + Y
Sbjct: 723 E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 781
Query: 527 KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578
+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL +Y G
Sbjct: 782 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 841
Query: 579 -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636
GPFLV APLSTI NWEREF W + + Y G SR +I++ E +D+ +
Sbjct: 842 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 901
Query: 637 GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688
A+ KF L+T++E+I D L I W C+++DEAHRLKN K L
Sbjct: 902 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 961
Query: 689 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748
++HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P
Sbjct: 962 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 1021
Query: 749 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L S+G G N +LLN
Sbjct: 1022 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1079
Query: 808 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867
MM+L+KCCNHPYL A E+ + + A+++S+GKL+L+ K+L KLK
Sbjct: 1080 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1132
Query: 868 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927
GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +F FL
Sbjct: 1133 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1192
Query: 928 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987
L TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 1193 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1252
Query: 988 MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047
+ A K+ L V+ R G + SK+E++D+L+ G +E++ +K
Sbjct: 1253 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1305
Query: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090
EED I LL R T +++ + S+F A +V E ++
Sbjct: 1306 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1365
Query: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135
DP++W+K + + DL +L K RVRKQ + ++D
Sbjct: 1366 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1417
Query: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166
+ S+ E ED DERP RR + D
Sbjct: 1418 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
Score = 42.7 bits (99), Expect = 0.004
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 33/218 (15%)
Query: 114 RLSVPVKVVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHS--------GGKT 165
R S+P +++ P A S + + + + E +A +SP +S P + G +T
Sbjct: 1570 RWSMP-ELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRT 1628
Query: 166 GMEENRRLEHQKKQEKANRI------VAEAIARARARGEQNIPRVLN-EDELPSVRPE-- 216
+E+ ++K EK +RI A+A + A + GE+ PR + EDE+P V E
Sbjct: 1629 PLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEME 1688
Query: 217 -EEGEKKRRKKSAGERLKEEKPKKSKTSG---ASKTKGKSKLNTITPVVGKKRKRNTSSD 272
E G + R+KSA E E+ ++ G + +G++ G KR
Sbjct: 1689 PEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGET---------GDLGKREDVKG 1739
Query: 273 NSDVEVMPAQSPRED--EESSIQKRRSNRQVKRKKYTE 308
+ ++ P PR + E +K R + +TE
Sbjct: 1740 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTE 1777
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 512 bits (1319), Expect = e-144
Identities = 330/862 (38%), Positives = 456/862 (52%), Gaps = 121/862 (14%)
Query: 388 EFFVKYKNYSYLHCEWATISQLEK-------------------------DKRIHQKLKRF 422
+FFVK++ SY HC W + QLE D+ +K K
Sbjct: 542 QFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNK 601
Query: 423 KTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
K A+M F+ P+++ + RIL+ HS+DK ++YL+KW LPY+ ++W
Sbjct: 602 DPKFAEMEERFYR--YGIKPEWMMIHRILN--HSVDKKGH---VHYLIKWRDLPYDQASW 654
Query: 483 ELKEDVDEGKIREFKRIQSRHPELKRVNR---------------------PQASAWKKLE 521
E EDV+ FK+ H EL R P K E
Sbjct: 655 E-SEDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYE 713
Query: 522 LSHEYKNRN--QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG- 578
EY + L YQ+EG+NWL F+W + ILADEMGLGKT+Q+ FL +Y G
Sbjct: 714 RQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGH 773
Query: 579 IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGR---- 633
GPFLV APLSTI NWEREF W +M + Y G SR +I++ E +D+ R
Sbjct: 774 SKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKK 833
Query: 634 ----LIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMD 689
+ KF L+T++E+I D L I+W C+I+DEAHRLKN K L
Sbjct: 834 ASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYS 893
Query: 690 LEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPM 749
L+HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P
Sbjct: 894 LQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPH 953
Query: 750 MLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTM 809
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ G N +LLN +
Sbjct: 954 MLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSLLNVV 1012
Query: 810 MELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAG 869
M+L+KCCNHPYL A EA + + A++R++GKL+L+ K+L LK G
Sbjct: 1013 MDLKKCCNHPYLFPVAA-------MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEG 1065
Query: 870 GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 929
GH+VLIFSQM + LD+LED+L Y YERIDG + GN+RQ AIDRF+ P + +F FLL
Sbjct: 1066 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1125
Query: 930 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 989
TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V +YR +TR S E +
Sbjct: 1126 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERIT 1185
Query: 990 DKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEE 1049
A K+ L V+ R G + SK+E++D+L+ G +E +G +E
Sbjct: 1186 QVAKKKMMLTHLVV-----RPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKE 1240
Query: 1050 DID-----------QILLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090
D + LL R T ++E +G S+F A +V E +
Sbjct: 1241 GEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVER 1300
Query: 1091 ---------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD 1135
DP++W+K + + DL +L K R+RKQ + ++D
Sbjct: 1301 EIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RIRKQVNYNDGSQED 1352
Query: 1136 DLVEFSDLESEDDERPRSRRHD 1157
+ +++ D S D
Sbjct: 1353 RDWQDDQSDNQSDYSVASEEGD 1374
Score = 37.7 bits (86), Expect = 0.13
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 152 SSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELP 211
++PA P G E + + E + EK + A A + P +EDE
Sbjct: 1552 NTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQA----PAPASEDEKV 1607
Query: 212 SVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGAS---KTKGKSKLNTITPVVGKKRKRN 268
V P EGE+K K ER E+P +++ GA+ K + KS ++ VV K ++
Sbjct: 1608 VVEP-PEGEEKVEKAEVKER--TEEPMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKK 1664
Query: 269 TSSDNSDVEVMPAQSPREDEESSIQKRRSNR 299
+ +V + ++P++ + +K R
Sbjct: 1665 EEEEKKEVMLQNGETPKDLNDEKQKKNIKQR 1695
Score = 35.4 bits (80), Expect = 0.65
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 178 KQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEK---------KRRKK-- 226
++E + ++ ++ E++ L+E E P ++ +++ +K KR+KK
Sbjct: 16 EEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKKER 75
Query: 227 ---------SAGE-----RLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSD 272
S+GE +EE +S + G+ T GK K + P KK K++ S
Sbjct: 76 MLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGP---KKEKKSKSKR 132
Query: 273 NSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDE 318
+ E ED++ ++ +S+ Q+ ED+D ++++
Sbjct: 133 KEEEE-------EEDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEED 171
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 495 bits (1275), Expect = e-139
Identities = 301/721 (41%), Positives = 412/721 (57%), Gaps = 88/721 (12%)
Query: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFH----ED------- 436
EFFVK+ SY HC W QLE + + + K M + F + ED
Sbjct: 510 EFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKSEKRK 569
Query: 437 ---------EEPF-----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
EE F P+++ + RIL+ HS DK ++YL+KW LPY+ TW
Sbjct: 570 NKDPLYAKMEERFYRYGIKPEWMMIHRILN--HSFDKKGD---VHYLIKWKDLPYDQCTW 624
Query: 483 ELKEDVDEGKIREFKRIQSRHPELK-----RVNRPQASAWKKLELSHEYK---------- 527
E+ +D+D K+ H EL R+ + KKL + K
Sbjct: 625 EI-DDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPT 683
Query: 528 ------------NRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY 575
L YQLEG+NWL F+W + ILADEMGLGKT+Q+I FL +Y
Sbjct: 684 VKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLY 743
Query: 576 NVG-IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGR 633
G GP+LV APLSTI NWEREF W + + Y G SR +I++ E +D+ R
Sbjct: 744 KEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIR 803
Query: 634 LIPGAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSL 685
+ KF L+T++E+I D L IEW C+++DEAHRLKN K L
Sbjct: 804 SGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVL 863
Query: 686 KHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAI 745
+++K+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +
Sbjct: 864 NSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 923
Query: 746 LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPN 804
L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L SKG G N +
Sbjct: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG--NQVS 981
Query: 805 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH-DFHLQAMVRSAGKLVLIDKLL 863
LLN MM+L+KCCNHPYL A + ++P+ + ++V+S+GKL+L+ K+L
Sbjct: 982 LLNIMMDLKKCCNHPYLFPVAAVE--------APVLPNGSYDGSSLVKSSGKLMLLQKML 1033
Query: 864 PKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDR 923
KL+ GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1034 KKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQ 1093
Query: 924 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNS 983
F FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V +YR +TR S
Sbjct: 1094 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRAS 1153
Query: 984 YEREMFDKASLKLGLDKAVLQ-SMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDE 1042
E + A K+ L V++ + + G++T K+E++D+L+ G + ++D E
Sbjct: 1154 VEERITQVAKRKMMLTHLVVRPGLGSKSGSMT------KQELDDILKFGT-EELFKDDVE 1206
Query: 1043 G 1043
G
Sbjct: 1207 G 1207
Score = 32.7 bits (73), Expect = 4.2
Identities = 21/117 (17%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 202 PRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVV 261
P+ L E++ R ++EG ++ +E+ +KS++ G+ + K K +
Sbjct: 53 PKKLKENKCKGKRKKKEGSNDELSEN-----EEDLEEKSESEGSDYSPNKKKKKKLKDKK 107
Query: 262 GKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDE 318
KK KR ++ D ++++ +++ +S+ Q+ + +D+D ++++
Sbjct: 108 EKKAKRKKKDEDED----------DNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEED 154
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 410 bits (1055), Expect = e-114
Identities = 247/593 (41%), Positives = 352/593 (59%), Gaps = 38/593 (6%)
Query: 491 GKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNR 550
G R + Q EL + + + E S Y +LR+YQ+ G+NWL+ + N
Sbjct: 139 GDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENG 198
Query: 551 QNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLSTITNWEREFNTWTEMNTIV 609
N ILADEMGLGKT+Q+I+ L + + I GP +V+ P ST+ NW EF W
Sbjct: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVP----- 253
Query: 610 YHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIID 669
+L S +I E R L+PG ++D +T++EM++ + ++ WR ++ID
Sbjct: 254 ---TLRSVCLIGDKEQRAAFVRDVLLPG--EWDVCVTSYEMLIKEKSVFKKFNWRYLVID 308
Query: 670 EAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKD 729
EAHR+KN KL + ++ +++LLTGTPLQN + EL+SLL+FL P F S +F
Sbjct: 309 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSW 368
Query: 730 FGD---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL 786
F L ++ V++L +L+P +LRR+K DVEK+L PK+E I V L+ +Q+++Y IL
Sbjct: 369 FDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL 428
Query: 787 EKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH--DF 844
K+ L+ AG + LLN +M+LRKCCNHPYL +GAE P+ D
Sbjct: 429 MKDIDILNS-AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGP-----------PYTTDM 476
Query: 845 HLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRV 904
HL V ++GK+V++DKLLPKLK G +VLIFSQM R LDILEDY + R Y Y R+DG+
Sbjct: 477 HL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQT 533
Query: 905 RGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARC 964
+ RQ +I+ +++P+S +FVF+L TRAGGLGINL AD I++DSDWNPQ DLQA R
Sbjct: 534 PHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRA 593
Query: 965 HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI 1024
HRIGQ+K V+V+R IT N+ E + ++A +KL LD V+Q D N+ I K E+
Sbjct: 594 HRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKI---GKDEM 650
Query: 1025 EDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKAS 1077
++R GA ++ S+ +EDID I L R T E K S ++S
Sbjct: 651 LQMIRHGATHVFASKE---SEITDEDIDGI-LERGAKKTAEMNEKLSKMGESS 699
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 407 bits (1045), Expect = e-113
Identities = 237/577 (41%), Positives = 347/577 (60%), Gaps = 39/577 (6%)
Query: 488 VDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNW 547
+ G R + Q EL +R ++ + E+S Y LR+YQ+ G+NWL+ +
Sbjct: 139 ISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLY 198
Query: 548 YNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLSTITNWEREFNTWT-EM 605
N N ILADEMGLGKT+Q+IA L + + I GP +V+ P ST+ NW EF W +
Sbjct: 199 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSL 258
Query: 606 NTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRC 665
I + G +R + EM +PG ++D +T++EM++ + ++ WR
Sbjct: 259 RVICFVGDKDARAAFIRDEM---------MPG--EWDVCVTSYEMVIKEKSVFKKFHWRY 307
Query: 666 VIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESE 725
++IDEAHR+KN KL + ++ +++LLTGTPLQN + EL++LL+FL P F S +
Sbjct: 308 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 367
Query: 726 FLKDFGD---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY 782
F F L ++ V++L A+LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y
Sbjct: 368 FDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWY 427
Query: 783 RAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH 842
IL K+ L+ +G + LLN +M+LRKCCNHPYL +GAE P
Sbjct: 428 TKILMKDIDVLNS-SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG------------PP 474
Query: 843 DFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDG 902
+ +V ++GK+V++DKLL KLK G +VLIFSQM R LDILEDY + R Y Y R+DG
Sbjct: 475 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 534
Query: 903 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA 962
+ R+ AI+ F+ P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA
Sbjct: 535 QTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 594
Query: 963 RCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQ--QFS 1020
R HRIGQ K V+V+RLIT N+ E + ++A +KL LD V+Q G + Q + +
Sbjct: 595 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-----QGRLIDQQSNKLA 649
Query: 1021 KKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLR 1057
K+E+ ++R GA ++ S+ +EDI IL R
Sbjct: 650 KEEMLQMIRHGATHVFASKE---SELTDEDITTILER 683
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 398 bits (1022), Expect = e-110
Identities = 237/589 (40%), Positives = 347/589 (58%), Gaps = 51/589 (8%)
Query: 488 VDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNW 547
+ G R + Q EL +R ++ + E+S Y LR+YQ+ G+NWL+ +
Sbjct: 139 ISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLY 198
Query: 548 YNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLSTITNWEREFNTWT-EM 605
N N ILADEMGLGKT+Q+IA L + + I GP +V+ P ST+ NW EF W +
Sbjct: 199 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSL 258
Query: 606 NTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRC 665
I + G +R + EM +PG ++D +T++EM++ + ++ WR
Sbjct: 259 RVICFVGDKDARAAFIRDEM---------MPG--EWDVCVTSYEMVIKEKSVFKKFHWRY 307
Query: 666 VIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESE 725
++IDEAHR+KN KL + ++ +++LLTGTPLQN + EL++LL+FL P F S +
Sbjct: 308 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 367
Query: 726 FLKDFGD---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY 782
F F L ++ V++L A+LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y
Sbjct: 368 FDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWY 427
Query: 783 RAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH 842
IL K+ L+ +G + LLN +M+LRKCCNHPYL +GAE P
Sbjct: 428 TKILMKDIDVLNS-SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG------------PP 474
Query: 843 DFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDG 902
+ +V ++GK+V++DKLL KLK G +VLIFSQM R LDILEDY + R Y Y R+DG
Sbjct: 475 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 534
Query: 903 RVRGNLRQ------------AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 950
+ R+ AI+ F+ P+S +F+F+L TRAGGLGINL +AD I++DS
Sbjct: 535 QTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDS 594
Query: 951 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRD 1010
DWNPQ DLQA R HRIGQ K V+V+RLIT N+ E + ++A +KL LD V+Q
Sbjct: 595 DWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-----Q 649
Query: 1011 GNITGIQ--QFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLR 1057
G + Q + +K+E+ ++R GA ++ S+ +EDI IL R
Sbjct: 650 GRLIDQQSNKLAKEEMLQMIRHGATHVFASKE---SELTDEDITTILER 695
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 375 bits (962), Expect = e-103
Identities = 326/1121 (29%), Positives = 514/1121 (45%), Gaps = 173/1121 (15%)
Query: 34 KIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQP 93
++ +QG + Q + Q Q + Q Q QQ QQ+ Q QPP Q Q QQ P+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQ----QQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
Query: 94 VTLSSVQQAQIMGPG-------QSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVKVLSAS 146
S ++ GP +PG R S QP A + G S
Sbjct: 259 YNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPS------------ 306
Query: 147 EVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE-KANRIVAEAIARARARGEQNIPRVL 205
+ PA P + +++R QK Q I+ E R +AR I +
Sbjct: 307 ----VPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELE 362
Query: 206 NEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKR 265
N LP P + K + A L ++ + + A + + + K+
Sbjct: 363 N---LPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV-ACMRRDTTLETALNSKAYKRS 418
Query: 266 KRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDV 325
KR T + E + +++ I++ R RQ K ++Y + ++ D +E V
Sbjct: 419 KRQTLREARMTEKL-------EKQQKIEQERKRRQ-KHQEYLNSI-LQHAKDFKEYHRSV 469
Query: 326 TGPIKPEP-------ILPEPVQEPDGETLPS--MQFFVENPSEEDAAIVDKVLSMRIVKK 376
G I+ E Q+ + E + M+ + E ++D+ R+
Sbjct: 470 AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRL--- 526
Query: 377 ELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQ-MRHFFHE 435
+ + +E+ N + H + +Q K+K+ ++ K+ + A+
Sbjct: 527 ---AYLLQQTDEYVANLTNLVWEHKQ----AQAAKEKKKRRRRKKKAEENAEGGESALGP 579
Query: 436 DEEPFNPDYVEVDRILDESHSIDKDNGE-------PVIYYLVKWCSL--PYE-------- 478
D EP + D + +H+ + G+ P L W + YE
Sbjct: 580 DGEPIDESSQMSDLPVKVTHT---ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSE 636
Query: 479 --DSTWELKEDVDEGKIREFKR---IQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLR 533
DS +E +++ +E +E + + E+ + Q K ++ EY + R
Sbjct: 637 ESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSAR 696
Query: 534 -----------------------------EYQLEGVNWLLFNWYNRQNCILADEMGLGKT 564
YQL+G+ W++ + N N ILADEMGLGKT
Sbjct: 697 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 756
Query: 565 IQSIAFLQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQ 622
IQ+IA + + + ++GP+L+I PLST++NW EF+ W + I Y G+ A R+
Sbjct: 757 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR---- 812
Query: 623 YEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCK 680
L+P + KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CK
Sbjct: 813 ----------SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK 862
Query: 681 LLDSLK-HMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG-------- 731
L L H ++LLTGTPLQN + EL++LL+FL P+ F S S F + F
Sbjct: 863 LTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 922
Query: 732 --DLKTEEQ---VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL 786
DL EE +++L +L+P +LRRLK++VE L K E +I+ +++ +QK YR +
Sbjct: 923 RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ 982
Query: 787 EKNFSFLSKGA-----GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIP 841
K L+ G+ G L+NT+M+LRK CNHPY+ EE + +I
Sbjct: 983 AKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVI- 1040
Query: 842 HDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERID 901
+ + R++GK L+D++LPKL+A H+VL+F QM + I+EDY R +LY R+D
Sbjct: 1041 ---NGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLD 1097
Query: 902 GRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQ 961
G + R A + +F++P S F+FLL TRAGGLG+NL AADT +IFDSDWNP DLQAQ
Sbjct: 1098 GTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQ 1157
Query: 962 ARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSK 1021
R HRIGQ V+V RL T NS E ++ A KL +D+ V+Q+ F +
Sbjct: 1158 DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQ 1206
Query: 1022 KEIEDLLRKGAYAAIMEEDDEGSKFCE----EDIDQILLRR 1058
K R+ AI+E ++E + E E ++Q++ RR
Sbjct: 1207 KS-SSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
Score = 36.6 bits (83), Expect = 0.29
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 2006 KKKGNRKKLVELEVECMEE---PNHLDVDLETR-----IPVINKVDGTLLVGEDAPRRAE 2057
KK+ RKK E E E P+ +D ++ + V + G +L G +AP+ ++
Sbjct: 557 KKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQ 616
Query: 2058 LEMWLQGHPEFAVDPR 2073
L+ WL+ +P + V PR
Sbjct: 617 LDAWLEMNPGYEVAPR 632
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 375 bits (962), Expect = e-103
Identities = 326/1121 (29%), Positives = 514/1121 (45%), Gaps = 173/1121 (15%)
Query: 34 KIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQP 93
++ +QG + Q + Q Q + Q Q QQ QQ+ Q QPP Q Q QQ P+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQ----QQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
Query: 94 VTLSSVQQAQIMGPG-------QSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVKVLSAS 146
S ++ GP +PG R S QP A + G S
Sbjct: 259 YNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPS------------ 306
Query: 147 EVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE-KANRIVAEAIARARARGEQNIPRVL 205
+ PA P + +++R QK Q I+ E R +AR I +
Sbjct: 307 ----VPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELE 362
Query: 206 NEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKR 265
N LP P + K + A L ++ + + A + + + K+
Sbjct: 363 N---LPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV-ACMRRDTTLETALNSKAYKRS 418
Query: 266 KRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDV 325
KR T + E + +++ I++ R RQ K ++Y + ++ D +E V
Sbjct: 419 KRQTLREARMTEKL-------EKQQKIEQERKRRQ-KHQEYLNSI-LQHAKDFKEYHRSV 469
Query: 326 TGPIKPEP-------ILPEPVQEPDGETLPS--MQFFVENPSEEDAAIVDKVLSMRIVKK 376
G I+ E Q+ + E + M+ + E ++D+ R+
Sbjct: 470 AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRL--- 526
Query: 377 ELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQ-MRHFFHE 435
+ + +E+ N + H + +Q K+K+ ++ K+ + A+
Sbjct: 527 ---AYLLQQTDEYVANLTNLVWEHKQ----AQAAKEKKKRRRRKKKAEENAEGGESALGP 579
Query: 436 DEEPFNPDYVEVDRILDESHSIDKDNGE-------PVIYYLVKWCSL--PYE-------- 478
D EP + D + +H+ + G+ P L W + YE
Sbjct: 580 DGEPIDESSQMSDLPVKVTHT---ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSE 636
Query: 479 --DSTWELKEDVDEGKIREFKR---IQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLR 533
DS +E +++ +E +E + + E+ + Q K ++ EY + R
Sbjct: 637 ESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSAR 696
Query: 534 -----------------------------EYQLEGVNWLLFNWYNRQNCILADEMGLGKT 564
YQL+G+ W++ + N N ILADEMGLGKT
Sbjct: 697 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 756
Query: 565 IQSIAFLQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQ 622
IQ+IA + + + ++GP+L+I PLST++NW EF+ W + I Y G+ A R+
Sbjct: 757 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR---- 812
Query: 623 YEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCK 680
L+P + KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CK
Sbjct: 813 ----------SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK 862
Query: 681 LLDSLK-HMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG-------- 731
L L H ++LLTGTPLQN + EL++LL+FL P+ F S S F + F
Sbjct: 863 LTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 922
Query: 732 --DLKTEEQ---VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL 786
DL EE +++L +L+P +LRRLK++VE L K E +I+ +++ +QK YR +
Sbjct: 923 RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ 982
Query: 787 EKNFSFLSKGA-----GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIP 841
K L+ G+ G L+NT+M+LRK CNHPY+ EE + +I
Sbjct: 983 AKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVI- 1040
Query: 842 HDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERID 901
+ + R++GK L+D++LPKL+A H+VL+F QM + I+EDY R +LY R+D
Sbjct: 1041 ---NGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLD 1097
Query: 902 GRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQ 961
G + R A + +F++P S F+FLL TRAGGLG+NL AADT +IFDSDWNP DLQAQ
Sbjct: 1098 GTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQ 1157
Query: 962 ARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSK 1021
R HRIGQ V+V RL T NS E ++ A KL +D+ V+Q+ F +
Sbjct: 1158 DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQ 1206
Query: 1022 KEIEDLLRKGAYAAIMEEDDEGSKFCE----EDIDQILLRR 1058
K R+ AI+E ++E + E E ++Q++ RR
Sbjct: 1207 KS-SSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
Score = 36.6 bits (83), Expect = 0.29
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 2006 KKKGNRKKLVELEVECMEE---PNHLDVDLETR-----IPVINKVDGTLLVGEDAPRRAE 2057
KK+ RKK E E E P+ +D ++ + V + G +L G +AP+ ++
Sbjct: 557 KKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQ 616
Query: 2058 LEMWLQGHPEFAVDPR 2073
L+ WL+ +P + V PR
Sbjct: 617 LDAWLEMNPGYEVAPR 632
Score = 33.1 bits (74), Expect = 3.2
Identities = 55/280 (19%), Positives = 116/280 (41%), Gaps = 42/280 (15%)
Query: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGK 251
R AR + PR++ EDELPS +++ E +R EE+ +K G+ + +
Sbjct: 1262 REDARNPKRKPRLMEEDELPSWIIKDDAEVER-------LTCEEEEEKIFGRGSRQRRDV 1314
Query: 252 SKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLD 311
+ +T +++ + ++ ++E M +EE ++KR+ R V + ED++
Sbjct: 1315 DYSDALT-----EKQWLRAIEDGNLEEM-------EEEVRLKKRKRRRNVDKDPAKEDVE 1362
Query: 312 IKITDDEEEEEVDVTGPIKPE------PILPEPVQEPDGETLPSMQFFVENPSEEDA--- 362
K + P P+ I+ + D + F++ PS ++
Sbjct: 1363 -KAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEY 1421
Query: 363 -AIVDKVLSMRIVKKELPSGQYTE----AEEFFVKYKNYSYLHCEWATISQLEKDKRIHQ 417
++ K + + +K+ + + +Y ++ + N + E SQ+ +D + Q
Sbjct: 1422 YELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEG---SQIYEDSIVLQ 1478
Query: 418 KL-KRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHS 456
+ K + K+A+ E E+ N + E D ES +
Sbjct: 1479 SVFKSARQKIAKE----EESEDESNEEEEEEDEEESESEA 1514
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 368 bits (944), Expect = e-101
Identities = 221/535 (41%), Positives = 321/535 (60%), Gaps = 49/535 (9%)
Query: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIA-FLQEVYNVGIHGPFLVIAPLS 590
LR YQLEGVNWL ++ + CIL DEMGLGKT Q+IA F+ + GPFL++ PLS
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 105
Query: 591 TITNWEREFNTWTE-MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 649
++NW+ E + ++ + Y G R +QQ + +F L+TT+E
Sbjct: 106 VLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD-----------LKQESRFHVLLTTYE 154
Query: 650 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 709
+ L D L+ W +++DEAHRLKN++ L +L + +LLTGTP+QN+++EL+
Sbjct: 155 ICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELY 214
Query: 710 SLLHFLEPSQFPSES--EFLKDFGDLKTE-EQVQKLQAILKPMMLRRLKEDVEKNLAPKQ 766
SLL F+EP F E +F++ + D++ E E +L +L+P +LRR+K +V L K
Sbjct: 215 SLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKT 274
Query: 767 ETIIEVELTNIQKKYYRAILEKNF-SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGA 825
E +I ++ +QKKYY+AIL K+ +F ++ A + N+L+ +LRKC +HPYL +G
Sbjct: 275 EVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILS---QLRKCVDHPYLFDGV 331
Query: 826 EEKILTEFREACHIIPHDFHL-QAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLD 884
E P F + + ++GKL L+DKLL L +GGH+VL+FSQM + LD
Sbjct: 332 E--------------PEPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLD 377
Query: 885 ILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT 944
IL+DY+ R Y YER+DG VRG R AI F + FVFLL TRAGG+G+NLTAADT
Sbjct: 378 ILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPI--FVFLLSTRAGGVGMNLTAADT 435
Query: 945 CIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQ 1004
I DSD+NPQNDLQA AR HRIGQ+K+VKV RLI R++ E ++ KA+ KL L +++
Sbjct: 436 VIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIE 495
Query: 1005 SMSGRDGNIT-GIQQ---FSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQIL 1055
G+ T G Q+ + ++ ++L+ G + EGS E D++ IL
Sbjct: 496 G-----GHFTLGAQKPAADADLQLSEILKFGLDKLLA---SEGSTMDEIDLESIL 542
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 362 bits (928), Expect = 3e-99
Identities = 313/1039 (30%), Positives = 474/1039 (45%), Gaps = 141/1039 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLL 1028
Q V+V RL T NS E ++ A KL +D+ V+Q+ F +K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQKSSSHER 1243
Query: 1029 RKGAYAAIMEEDDEGSKFC 1047
R A + E+ + S+ C
Sbjct: 1244 RAFLQAILEHEEQDESRHC 1262
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 32.0 bits (71), Expect = 7.2
Identities = 51/248 (20%), Positives = 96/248 (38%), Gaps = 38/248 (15%)
Query: 192 RARARGEQNIPRVLNEDELPS-----------VRPEEEGEKKRRKKSAGERLKEEKPKKS 240
R AR + PR++ EDELPS + EEE EK + S + + +
Sbjct: 1325 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1384
Query: 241 KTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQ 300
+ K GK +T + V + + + + E+ E +++++S+R+
Sbjct: 1385 EKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKKSSRK 1444
Query: 301 VKRK----KYTEDLDIKITD-DEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVE 355
KR T + D D+E ++ G E + P P
Sbjct: 1445 RKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP----------------P 1488
Query: 356 NPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRI 415
N +++ IVD V+ K+ SG+ + E F++ + L + I + K+I
Sbjct: 1489 NLTKKMKKIVDAVIKY----KDSSSGR--QLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1542
Query: 416 HQKLKRFK 423
++++ K
Sbjct: 1543 KERIRNHK 1550
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 362 bits (928), Expect = 3e-99
Identities = 313/1039 (30%), Positives = 474/1039 (45%), Gaps = 141/1039 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLL 1028
Q V+V RL T NS E ++ A KL +D+ V+Q+ F +K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQKSSSHER 1243
Query: 1029 RKGAYAAIMEEDDEGSKFC 1047
R A + E+ + S+ C
Sbjct: 1244 RAFLQAILEHEEQDESRHC 1262
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 35.0 bits (79), Expect = 0.85
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKR------RKKSAGERLKEEKPKKSKTSGA 245
R AR + PR++ EDELPS +++ E +R +K G + K S
Sbjct: 1325 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1384
Query: 246 SKTKGKS----KLNTITPVVGKK---RKRNTSSD-NSDVEVMPAQSPREDEESSIQKRR 296
K K+ L I V +K RKR SD S +S +D+ES QK+R
Sbjct: 1385 EKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1443
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 362 bits (928), Expect = 3e-99
Identities = 313/1039 (30%), Positives = 474/1039 (45%), Gaps = 141/1039 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLL 1028
Q V+V RL T NS E ++ A KL +D+ V+Q+ F +K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQKSSSHER 1243
Query: 1029 RKGAYAAIMEEDDEGSKFC 1047
R A + E+ + S+ C
Sbjct: 1244 RAFLQAILEHEEQDESRHC 1262
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 35.0 bits (79), Expect = 0.85
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKR------RKKSAGERLKEEKPKKSKTSGA 245
R AR + PR++ EDELPS +++ E +R +K G + K S
Sbjct: 1325 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1384
Query: 246 SKTKGKS----KLNTITPVVGKK---RKRNTSSD-NSDVEVMPAQSPREDEESSIQKRR 296
K K+ L I V +K RKR SD S +S +D+ES QK+R
Sbjct: 1385 EKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1443
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 360 bits (925), Expect = 7e-99
Identities = 306/997 (30%), Positives = 462/997 (46%), Gaps = 130/997 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQS 1005
Q V+V RL T NS E ++ A KL +D+ V+Q+
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 36.2 bits (82), Expect = 0.38
Identities = 46/171 (26%), Positives = 65/171 (38%), Gaps = 25/171 (14%)
Query: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKR------RKKSAGERLKEEKPKKSKTSGA 245
R AR + PR++ EDELPS +++ E +R +K G + K S
Sbjct: 1292 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1351
Query: 246 SKTKGKS----KLNTITPVVGKK---RKRNTSSD-NSDVEVMPAQSPREDEESSIQKRRS 297
K K+ L I V +K RKR SD S +S +D+ES QK+R
Sbjct: 1352 EKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRG 1411
Query: 298 N-----------RQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE 337
K+ K D IK D + +V + LPE
Sbjct: 1412 RPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPE 1462
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 360 bits (925), Expect = 7e-99
Identities = 306/997 (30%), Positives = 462/997 (46%), Gaps = 130/997 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQS 1005
Q V+V RL T NS E ++ A KL +D+ V+Q+
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 35.0 bits (79), Expect = 0.85
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKR------RKKSAGERLKEEKPKKSKTSGA 245
R AR + PR++ EDELPS +++ E +R +K G + K S
Sbjct: 1292 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1351
Query: 246 SKTKGKS----KLNTITPVVGKK---RKRNTSSD-NSDVEVMPAQSPREDEESSIQKRR 296
K K+ L I V +K RKR SD S +S +D+ES QK+R
Sbjct: 1352 EKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1410
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 360 bits (925), Expect = 7e-99
Identities = 306/997 (30%), Positives = 462/997 (46%), Gaps = 130/997 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQS 1005
Q V+V RL T NS E ++ A KL +D+ V+Q+
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 35.8 bits (81), Expect = 0.50
Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 30/175 (17%)
Query: 192 RARARGEQNIPRVLNEDELPS-------------VRPEEE-----GEKKRRKKSAGERLK 233
R AR + PR++ EDELPS EEE G + R++ + L
Sbjct: 1292 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1351
Query: 234 EEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQ 293
E++ K+ + T + + +KRKR+ S S +S +D+ES Q
Sbjct: 1352 EKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRD-SDAGSSTPTTSTRSRDKDDESKKQ 1410
Query: 294 KRRSN-----------RQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE 337
K+R K+ K D IK D + +V + LPE
Sbjct: 1411 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPE 1465
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 360 bits (925), Expect = 7e-99
Identities = 306/997 (30%), Positives = 462/997 (46%), Gaps = 130/997 (13%)
Query: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
Query: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
GL V++L E + P S A K +E + Q
Sbjct: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
Query: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
Query: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
L + K K S T KL +R +N +E + ++
Sbjct: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
Query: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
Query: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
P PDGE L + P + K+L+ K +GQ E
Sbjct: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
Query: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Query: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
Query: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
Query: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
Query: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQS 1005
Q V+V RL T NS E ++ A KL +D+ V+Q+
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231
Score = 38.5 bits (88), Expect = 0.077
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
Query: 2057 ELEMWLQGHPEFAVDPR 2073
+LE WL+ +P + V PR
Sbjct: 638 QLEAWLEMNPGYEVAPR 654
Score = 34.7 bits (78), Expect = 1.1
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 192 RARARGEQNIPRVLNEDELPS-------------VRPEEE-----GEKKRRKKSAGERLK 233
R AR + PR++ EDELPS EEE G + R++ + L
Sbjct: 1292 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1351
Query: 234 EEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQ 293
E++ K+ + T + + +KRKR+ S S +S +D+ES Q
Sbjct: 1352 EKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRD-SDAGSSTPTTSTRSRDKDDESKKQ 1410
Query: 294 KRR 296
K+R
Sbjct: 1411 KKR 1413
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 356 bits (913), Expect = 2e-97
Identities = 225/603 (37%), Positives = 329/603 (54%), Gaps = 99/603 (16%)
Query: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591
+R YQ+EG+ WL W N N ILADEMGLGKT+Q IA + + G+ GPFLV PLST
Sbjct: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLST 282
Query: 592 ITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEM 650
+ NW EF +T ++ T++YHG+ RQ + + +Y + ++ P +IT+FE+
Sbjct: 283 LPNWMAEFKRFTPDIPTMLYHGTQEERQKLVR-NIYKRKGTLQIHP------VVITSFEI 335
Query: 651 ILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFS 710
+ D L+ W+ +I+DE HR+KN C+L+ LK + ++K+LLTGTPLQN + EL+S
Sbjct: 336 AMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWS 395
Query: 711 LLHFLEPSQFPSESEFLKDFG---------DLKTEEQVQK----LQAILKPMMLRRLKED 757
LL+FL P F F F D+ +E+ Q L IL P +LRRLK D
Sbjct: 396 LLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSD 455
Query: 758 VEKNLAPKQETIIEVELTNIQKKYYRAI-------------------------------- 785
V + PK+E ++ L+ Q+ +Y AI
Sbjct: 456 VALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKS 515
Query: 786 ------------LEKNFSFLS------KGAGHTNMP-------NLLNTMMELRKCCNHPY 820
LEK S + + N+P L N MM LRKCCNHPY
Sbjct: 516 INYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPY 575
Query: 821 LINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMV 880
LI + + EF+ + +V ++GK +++D++LP+LK GHKVL+FSQM
Sbjct: 576 LIEYPIDPVTQEFKID----------EELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 625
Query: 881 RCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 940
LDIL DY R + + R+DG + + R+ + F+ D + F+FL+ TRAGGLGINLT
Sbjct: 626 SMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLGINLT 684
Query: 941 AADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 1000
AADT II+DSDWNPQ+DLQAQ RCHRIGQ+K V VYRL+T N+ ++++ ++A+ K L+K
Sbjct: 685 AADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 744
Query: 1001 AVLQS---MSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSK---FCEEDIDQI 1054
++ G+ G KE+ +LL+ Y E + +GS+ ++D++ +
Sbjct: 745 LIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY----EREIKGSREKVISDKDLELL 800
Query: 1055 LLR 1057
L R
Sbjct: 801 LDR 803
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 275 bits (702), Expect = 5e-73
Identities = 185/538 (34%), Positives = 276/538 (51%), Gaps = 78/538 (14%)
Query: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591
L+ YQ G+NWL + N ILADEMGLGKTIQ+IAFL +Y G +GP L++ P ST
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 592 ITNWEREFNTWTE-MNTIVYHGSLASRQMIQ-----QYEMYCKDSRGRLIPGAYKFDALI 645
I NW RE N W + + Y+GS R+ I+ +YE Y + ++
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDY---------------NVIV 601
Query: 646 TTFEMILSDCPE---LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 702
TT+ +S + R ++ I DE H LKN L ++ +++LLTGTP+Q
Sbjct: 602 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ 661
Query: 703 NTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE----------EQVQKLQAILKPMMLR 752
N + EL SLL+F+ P F S + ++ KT+ E++ + I+KP +LR
Sbjct: 662 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR 721
Query: 753 RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAI---LEKNFSFLSKGAGHTNMPNLLNTM 809
R+KE+V K L PK++ I ++ Q++ Y + L+K+ + L K + N M
Sbjct: 722 RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT------EMCNVM 775
Query: 810 MELRKCCNHP------YLINGAEEKILTEFREACHI------------IPHDFHLQAMVR 851
M+LRK NHP Y +E +E H + DF L + +
Sbjct: 776 MQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCK 835
Query: 852 S----------------AGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895
+GK ++ +L +LK G +V++FSQ LDILE L ++
Sbjct: 836 QYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQH 895
Query: 896 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 955
Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP
Sbjct: 896 RYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPY 954
Query: 956 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 1013
ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++ + G +G++
Sbjct: 955 NDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1012
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 273 bits (698), Expect = 1e-72
Identities = 182/535 (34%), Positives = 273/535 (51%), Gaps = 70/535 (13%)
Query: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591
L+ YQ G+NWL + N ILADEMGLGKTIQ+IAFL +Y G +GP L++ P ST
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 592 ITNWEREFNTWTE-MNTIVYHGSLASRQMIQ-----QYEMYCKDSRGRLIPGAYKFDALI 645
I NW RE N W + + Y+GS R+ I+ +YE Y + ++
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDY---------------NVIV 601
Query: 646 TTFEMILSDCPE---LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 702
TT+ +S + R ++ I DE H LKN L ++ +++LLTGTP+Q
Sbjct: 602 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ 661
Query: 703 NTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE----------EQVQKLQAILKPMMLR 752
N + EL SLL+F+ P F S + ++ KT+ E++ + I+KP +LR
Sbjct: 662 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR 721
Query: 753 RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMEL 812
R+KE+V K L PK++ I ++ Q++ Y + + ++ N + N MM+L
Sbjct: 722 RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQL 780
Query: 813 RKCCNHP------YLINGAEEKILTEFREACHI------------IPHDFHLQAMVRS-- 852
RK NHP Y +E +E H + DF L + +
Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
Query: 853 --------------AGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYE 898
+GK ++ +L +LK G +V++FSQ LDILE L ++ Y
Sbjct: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
Query: 899 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL 958
R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND
Sbjct: 901 RLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959
Query: 959 QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 1013
QA+ RCHR+GQ+K V V +LI++ + E M KL L++ + G +G++
Sbjct: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1014
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 273 bits (698), Expect = 1e-72
Identities = 182/535 (34%), Positives = 273/535 (51%), Gaps = 70/535 (13%)
Query: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591
L+ YQ G+NWL + N ILADEMGLGKTIQ+IAFL +Y G +GP L++ P ST
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 592 ITNWEREFNTWTE-MNTIVYHGSLASRQMIQ-----QYEMYCKDSRGRLIPGAYKFDALI 645
I NW RE N W + + Y+GS R+ I+ +YE Y + ++
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDY---------------NVIV 601
Query: 646 TTFEMILSDCPE---LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 702
TT+ +S + R ++ I DE H LKN L ++ +++LLTGTP+Q
Sbjct: 602 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ 661
Query: 703 NTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE----------EQVQKLQAILKPMMLR 752
N + EL SLL+F+ P F S + ++ KT+ E++ + I+KP +LR
Sbjct: 662 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR 721
Query: 753 RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMEL 812
R+KE+V K L PK++ I ++ Q++ Y + + ++ N + N MM+L
Sbjct: 722 RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQL 780
Query: 813 RKCCNHP------YLINGAEEKILTEFREACHI------------IPHDFHLQAMVRS-- 852
RK NHP Y +E +E H + DF L + +
Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
Query: 853 --------------AGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYE 898
+GK ++ +L +LK G +V++FSQ LDILE L ++ Y
Sbjct: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
Query: 899 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL 958
R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND
Sbjct: 901 RLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959
Query: 959 QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 1013
QA+ RCHR+GQ+K V V +LI++ + E M KL L++ + G +G++
Sbjct: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1014
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 239 bits (611), Expect = 2e-62
Identities = 169/560 (30%), Positives = 274/560 (48%), Gaps = 60/560 (10%)
Query: 486 EDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRN----QLREYQLEGVN 541
ED + ++R + +++ + E KR+ S E +K +L +YQ GV
Sbjct: 458 EDYYKQRLRRWNKLRLQDKE-KRLKLEDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVR 516
Query: 542 WLLFNWYNRQNCILADEMGLGKTIQSIAFLQEV-----------YNVGIHGPFLVIAPLS 590
WL + IL DEMGLGKTIQ IAFL + Y GP +++ P +
Sbjct: 517 WLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTT 576
Query: 591 TITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEM 650
+ W +EF+TW + ++ + Y + A+ LIT++
Sbjct: 577 VMHQWVKEFHTWWPPFRVA---------ILHETGSYTHKKEKLIRDVAHCHGILITSYSY 627
Query: 651 ILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFS 710
I ++ +W VI+DE H+++N N + + K H+++L+G+P+QN + EL+S
Sbjct: 628 IRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWS 687
Query: 711 LLHFLEPSQFPSESEFLKDF------GDLKTEEQVQK---------LQAILKPMMLRRLK 755
L F+ P + + F++ F G VQ L+ + P +LRR+K
Sbjct: 688 LFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMK 747
Query: 756 EDVEKNLA--PKQETIIEVELTNIQKKYYRAILE-KNFSFLSKGAGHTNMPNLLNTMMEL 812
DV+ +L+ K E ++ LT+ Q K Y+ ++ K + G + + ++ L
Sbjct: 748 SDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGE-----MQIFSGLIAL 802
Query: 813 RKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMV---RSAGKLVLIDKLLPKLKAG 869
RK CNHP L +G + + +P D + + +GK+++++ LL
Sbjct: 803 RKICNHPDLFSGGPKNLKG--------LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQ 854
Query: 870 GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 929
G +VL+FSQ + LDILE +L ++Y Y ++DG RQ I R+++ D+ FVFLL
Sbjct: 855 GQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFVFLLT 913
Query: 930 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 989
TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V VYRL+T + E +++
Sbjct: 914 TRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 973
Query: 990 DKASLKLGLDKAVLQSMSGR 1009
+ K L VL+ R
Sbjct: 974 HRQIFKQFLTNRVLKDPKQR 993
Score = 40.4 bits (93), Expect = 0.020
Identities = 63/317 (19%), Positives = 126/317 (39%), Gaps = 40/317 (12%)
Query: 47 QAKNAQGQPAKVVTIQ--LQVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQA-- 102
Q N + Q K+ Q LQ +++I S + + PS+ L VQ+
Sbjct: 177 QKYNKEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDAEPGPSSLGSMLMPVQETAW 236
Query: 103 -QIMGPGQS-------PGQRLSVPVKVVLQPQAGSSQGASSGLSVV---KVLSASEVAAL 151
+++ GQ P ++ P K++L +G + + + K ++ AA
Sbjct: 237 EELIRTGQMTPFGTQIPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAAR 296
Query: 152 SSPASSAPHSGGKTGMEENRRLEH-QKKQEKANRIVAEAIARA-RARGEQNIPRVLNEDE 209
+PA P + + + N++ KK+E+ + + + RA + +G+ +P+ E
Sbjct: 297 KAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWE 356
Query: 210 LPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGA-SKTKGKSKLNTITPVV-GKKRKR 267
+RPE EG+ + + +EE+ + + GA + G + P+ G KR++
Sbjct: 357 -SDMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQK 415
Query: 268 NTSSDNSDVEVMPAQSP--------------------REDEESSIQKRRSNRQVKRKKYT 307
D + P+ R+D + K+R R K +
Sbjct: 416 KVPVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQD 475
Query: 308 EDLDIKITDDEEEEEVD 324
++ +K+ DD EE + +
Sbjct: 476 KEKRLKLEDDSEESDAE 492
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 224 bits (571), Expect = 8e-58
Identities = 162/540 (30%), Positives = 267/540 (49%), Gaps = 67/540 (12%)
Query: 532 LREYQLEGVNWLL-----FNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHG----- 581
LR +Q EG+ +L R ILADEMGLGKT+Q I+ + + G +G
Sbjct: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
Query: 582 -PFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYK 640
L++ P S + NW++EF W I + + + E + K +
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERI----KIFTVDQDHKVEEFIK---------SIF 402
Query: 641 FDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTP 700
+ LI ++EM+L +++ I++ +I DE HRLKN K +L + E +++LTGTP
Sbjct: 403 YSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTP 462
Query: 701 LQNTVEELFSLLHFLEP-------------------SQFPSESEFLKDFGDLKTEEQVQK 741
+QN ++E F+L+ F+ P S+ PS SE K+ G+ + E
Sbjct: 463 IQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAE---- 518
Query: 742 LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTN 801
L + +LRR +E + K L PK E ++ +Q + YR +L N
Sbjct: 519 LTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLEN 578
Query: 802 MPNLLNTMMELRKCCNHPYLI-NGAEEKILTE----------FREACHIIPHDFH-LQAM 849
P+L+ + L+K CNHP L+ N +EK + ++ + P D++ L
Sbjct: 579 SPHLI-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFT 637
Query: 850 VRSAGKLVLIDKLLPKLKA--GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGN 907
+ +GKL ++ KLL + KV++ S + L+IL++ + Y Y R+DG+ +
Sbjct: 638 EKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697
Query: 908 LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 967
RQ +D F+ S F+FLL ++AGG+G+NL I++D DWNP D+QA +R R
Sbjct: 698 QRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRD 757
Query: 968 GQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1027
GQ V +YRL+T + E +++ + K GL AV+ ++ +I QFS +E+++L
Sbjct: 758 GQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV-DLTKTSEHI----QFSVEELKNL 812
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,972,850
Number of Sequences: 37866
Number of extensions: 4972912
Number of successful extensions: 49867
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 754
Number of HSP's that attempted gapping in prelim test: 33151
Number of HSP's gapped (non-prelim): 12125
length of query: 2302
length of database: 18,247,518
effective HSP length: 118
effective length of query: 2184
effective length of database: 13,779,330
effective search space: 30094056720
effective search space used: 30094056720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.