Guide to the Human Genome
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Name: NLRP12 Sequence: fasta or formatted (287aa) NCBI GI: 15193292
Description:

NLR family, pyrin domain containing 12 isoform 1

Referenced in:

Pyrin and Associated Functions
RNases and RNA Stability

Other entries for this name:
alt prot [1061aa] NLR family, pyrin domain containing 12 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         20           3
 C cysteine            5.9         17           1
 D aspartate           4.2         12           1
 E glutamate           4.2         12           1
 F phenylalanine       1.0          3           1
 G glycine             7.7         22           2
 H histidine           2.4          7           1
 I isoleucine          2.1          6           1
 K lysine              3.8         11           1
 L leucine            20.9         60           3
 M methionine          2.8          8           2
 N asparagine          4.2         12           2
 P proline             3.1          9           1
 Q glutamine           4.5         13           1
 R arginine            7.7         22           2
 S serine              5.9         17           3
 T threonine           6.3         18           1
 V valine              3.5         10           1
 W tryptophan          1.7          5           2
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 12 isoform 1 [Ho... 
NLRP12                0.678   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP3                 0.345   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.345   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.343   NLR family, pyrin domain containing 3 isoform c [Ho...
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
RNH1                  0.315   ribonuclease/angiogenin inhibitor 
NLRP3                 0.313   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP14                0.297   NLR family, pyrin domain containing 14 
NLRP4                 0.290   NLR family, pyrin domain containing 4 
NLRP9                 0.286   NLR family, pyrin domain containing 9 
NLRP5                 0.281   NACHT, LRR and PYD containing protein 5 
NLRP3                 0.260   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP13                0.251   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP11                0.244   NLR family, pyrin domain containing 11 
NLRP2                 0.244   NLR family, pyrin domain containing 2 
NLRP1                 0.224   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.224   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.224   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.212   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.212   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP7                 0.196   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.196   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.196   NACHT, leucine rich repeat and PYD containing 7 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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